Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005224

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005224	AC064869	109453471	3
S/G/Y/R/B/O	NT_005224	AC096655	109622985	3
S/G/Y/R/B/O	NT_005224	AC009963	109760857	3	RH70388	2	386.62					2	AC097527, AC114755,	AC009963, AC013464, AC097527, AC114755
S/G/Y/R/B/O	NT_005224	AC009963	109762321	3	RH56601	2	389.30					5	AC012487, AC013271, AC097527, AC112246, AC114755, AC115115,	AC009963, AC012487, AC013271, AC097527, AC108938, AC109815, AC112246, AC114755, AC114781, AC115115
S/G/Y/R/B/O	NT_005224	AC009963	109762321	3	WI-15297					2	623.40	5	AC012487, AC013271, AC097527, AC112246, AC114755, AC115115,	AC009963, AC012487, AC013271, AC097527, AC108938, AC109815, AC112246, AC114755, AC114781, AC115115
S/G/Y/R/B/O	NT_005224	AC009963	109772605	3	RH26369	2	318.23					4	AC010893, AC064810, AC093616, AC097527, AC109354, AC114755,	AC009963, AC010893, AC064810, AC093616, AC097527, AC109354, AC111200, AC114755
S/G/Y/R/B/O	NT_005224	AC009963	109790604	3	RH61131	6	137.61			6	193.60	3	Z85986,	Z85986
S/G/Y/R/B/O	NT_005224	AC023672	109893619	3
S/G/Y/R/B/O	NT_005224	AC096545	110018885	3
S/G/Y/R/B/O	NT_005224	AC019100	110178504	3	RH17525	2	387.12					1		AC019100, AF186262
S/G/Y/R/B/O	NT_005224	AC019100	110179592	3	RH57153	2	387.29					1		AC019100, AF186262
S/G/Y/R/B/O	NT_005224	AC019100	110179592	3	WI-16746					2	618.80	1		AC019100, AF186262
S/G/Y/R/B/O	NT_005224	AC019100	110179650	3	RH67430	2	386.84					1		AC019100, AF186262
S/G/Y/R/B/O	NT_005224	AC019100	110226857	3	RH70175	2	387.12					1		AC019100
S/G/Y/R/B/O	NT_005224	AC068941	110232354	3
S/G/Y/R/B/O	NT_005224	AC012487	110343031	3	RH69881	2	386.95					1		AC012487, AC083903
S/G/Y/R/B/O	NT_005224	AC012487	110343248	3	RH44196	2	386.95					1		AC012487, AC083903
S/G/Y/R/B/O	NT_005224	AC012487	110367157	3	RH70365	2	391.78					4	AC013271, AC064810, AC093616, AC109354, AC112246,	AC012487, AC013271, AC064810, AC083903, AC093616, AC108938, AC109354, AC109815, AC111200, AC112246, AC114781
S/G/Y/R/B/O	NT_005224	AC012487	110379166	3	RH56601	2	389.30					5	AC009963, AC013271, AC097527, AC112246, AC114755, AC115115,	AC009963, AC012487, AC013271, AC097527, AC108938, AC109815, AC112246, AC114755, AC114781, AC115115
S/G/Y/R/B/O	NT_005224	AC012487	110379166	3	WI-15297					2	623.40	5	AC009963, AC013271, AC097527, AC112246, AC114755, AC115115,	AC009963, AC012487, AC013271, AC097527, AC108938, AC109815, AC112246, AC114755, AC114781, AC115115
S/G/Y/R/B/O	NT_005224	AC012487	110379307	3	RH11823	2	384.50					2	AC097527, AC114755,	AC012487, AC013464, AC083903, AC097527, AC114755
S/G/Y/R/B/O	NT_005224	AC012487	110444658	3	RH56496	2	387.85					1		AC012487, AC083903
S/G/Y/R/B/O	NT_005224	AC012487	110444658	3	WI-19400					2	616.60	1		AC012487, AC083903
S/G/Y/R/B/O	NT_005224	AC012487	110444722	3	RH66261	2	386.95					1		AC012487, AC083903
S/G/Y/R/B/O	NT_005224	AC010095	110532533	3	RH99316	2	387.90					2	AC011919, AC013271,	AC010095, AC011919, AC013271
S/G/Y/R/B/O	NT_005224	AC010095	110554067	3	RH68512	2	388.19					1		AC010095
S/G/Y/R/B/O	NT_005224	AC010095	110554123	3	RH21721	2	387.35					1	AC073415,	AC010095, AC073415
S/G/Y/R/B/O	NT_005224	AC010095	110556967	3	RH70783	2	391.37					2	AC011919, AC013271, AC073415,	AC011919, AC013271, AC073415, AC112229
S/G/Y/R/B/O	NT_005224	AC010095	110653536	3	RH42793			2	5705.00			1	AC073415,	AC010095, AC073415
S/G/Y/R/B/O	NT_005224	AC010095	110654571	3	RH67924	2	388.52					1	AC073415,	AC010095, AC073415, L41840
S/G/Y/R/B/O	NT_005224	AC010095	110654574	3	RH18435	2	388.13					1	AC073415,	AC010095, AC073415, L41840
S/G/Y/R/B/O	NT_005224	AC010095	110655146	3	RH38206			2	5642.00			1	AC073415,	AC010095, AC073415
S/G/Y/R/B/O	NT_005224	AC010095	110655295	3	RH98799	2	388.19					1	AC073415,	AC010095, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110746587	1	RH70637	2	390.14					2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110749308	1	RH70491	2	390.14					2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110750094	1	RH69458	2	390.14					2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110751433	1	RH57029	2	389.63					2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110751433	1	WI-14384					2	619.30	2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110755346	1	RH36012	2	390.14					2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110755389	1	RH44135	2	390.14					2	AC022170,	AC022170, AC073415
S/G/Y/R/B/O	NT_005224	AC073415	110764626	1	RH56257	2	388.68					2	AC022170,	AC022170, AC073415, AF130996
S/G/Y/R/B/O	NT_005224	AC073415	110764626	1	SGC44330					2	622.80	2	AC022170,	AC022170, AC073415, AF130996
S/G/Y/R/B/O	NT_005224	AC073415	110764796	1	RH103303	2	390.14					2	AC022170,	AC022170, AC073415, AF130996
S/G/Y/R/B/O	NT_005224		-		RH56326	2	388.63					0