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  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005332
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005332AC1040641731414661RH128012557.48    2AC104685, AC116310, AC104064, AC104685, AC116310
S/G/Y/R/B/O NT_005332AC0682801731887293          
S/G/Y/R/B/O NT_005332AC0125941732812163          
S/G/Y/R/B/O NT_005332AC0934021734474903RH154522563.00    1AC007277, AC007277
S/G/Y/R/B/O NT_005332AC0934021734474903D2S376    2888.301AC007277, AC007277
S/G/Y/R/B/O NT_005332AC0934021734474903RH265  27773.00  1AC007277, AC007277
S/G/Y/R/B/O NT_005332AC0072771735666293RH31655  27896.00  1 AC007277
S/G/Y/R/B/O NT_005332AC0074051736301793RH931232564.51    1 AC007405
S/G/Y/R/B/O NT_005332AC0074051736607263RH31659  27876.00  1 AC007405
S/G/Y/R/B/O NT_005332AC0074051736742723RH563402567.5927794.002842.801 AC007405
S/G/Y/R/B/O NT_005332AC0074051737896213RH32212  27784.002845.301 AC007405
S/G/Y/R/B/O NT_005332AC0074051737905473RH569002567.5927852.002843.201 AC007405
S/G/Y/R/B/O NT_005332AC0100921738959213RH562972564.61    1 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921738959213WI-16146    2888.901 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921738964103RH8025  27845.00  1 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921738966243RH170532568.31    1 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921738966703RH569182568.41  2842.401 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921739205643RH38251  27852.00  1 AC010092, AC067806
S/G/Y/R/B/O NT_005332AC0100921739211483RH1034992564.51    1 AC010092, AC067806
S/G/Y/R/B/O NT_005332AC0100921739218013RH562722568.31  2842.401 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921739218013RH563912565.75  2843.001 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921739218993RH110382565.64    1 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0100921739240913RH38286  27852.00  1 AC010092, AC084284
S/G/Y/R/B/O NT_005332AC0100921739241183RH659202565.44    1 AC010092, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0099531739892983RH364312564.61    1 AC009953, AC067806, AC084284
S/G/Y/R/B/O NT_005332AC0099531740076373WI-5765    2888.701 AC009953
S/G/Y/R/B/O NT_005332AC0077391742410323RH1027122564.61    1 AC007739
S/G/Y/R/B/O NT_005332AC0080651742787033          
S/G/Y/R/B/O NT_005332AC0079691744007453RH694092568.41    1 AC079152
S/G/Y/R/B/O NT_005332AC0079691744599373RH567552568.4127799.002843.501 AC007969
S/G/Y/R/B/O NT_005332AC0079691744625943RH46972564.61    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744625943D2S333    2888.901 AC007969
S/G/Y/R/B/O NT_005332AC0079691744730553RH561632565.95  2843.001 AC007969
S/G/Y/R/B/O NT_005332AC0079691744782213RH476652569.92    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744809903RH677732568.41    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744810043RH459152558.29    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744845303RH809202558.12    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744847293RH363192568.41    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744855063RH684942568.41    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744863763RH361262564.51    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744876353RH465292557.27    1 AC007969
S/G/Y/R/B/O NT_005332AC0079691744876443RH170892568.41    1 AC007969
S/G/Y/R/B/O NT_005332AC0648261746167653RH564252566.1627839.00  1 AC064826
S/G/Y/R/B/O NT_005332AC0648261746167653SGC34492    2902.801 AC064826
S/G/Y/R/B/O NT_005332AC0648261746291223RH31656  27953.00  1 AC064826
S/G/Y/R/B/O NT_005332AC0680391746373483RH696632569.92    1 AC068039
S/G/Y/R/B/O NT_005332AC0680391746374603RH462852566.16    1 AC068039
S/G/Y/R/B/O NT_005332AC0680391746397143RH153772569.92    1 AC068039
S/G/Y/R/B/O NT_005332AC0680391746397143RH293  27839.00  1 AC068039
S/G/Y/R/B/O NT_005332AC0680391746491193RH271292566.16    1 AC068039


  NT_005332 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005332AC0680391746794663RH680052569.92    1 AC068039
S/G/Y/R/B/O NT_005332AC0680391746794833RH1031862569.82    1 AC068039
S/G/Y/R/B/O NT_005332AC0680391747112373RH655142574.92    1 AC068039
S/G/Y/R/B/O NT_005332AC0680391747315823RH31657  27933.00  1 AC068039
S/G/Y/R/B/O NT_005332AC1147451748338851          
S/G/Y/R/B/O NT_005332AC0159761749172133RH462632558.29    1AC114745, AC015976, AC114745
S/G/Y/R/B/O NT_005332AC0159761749218003RH38065  27799.00  1AC114745, AC015976, AC114745
S/G/Y/R/B/O NT_005332AC0159761749219233RH568922569.82  2845.301AC114745, AC015976, AC114745
S/G/Y/R/B/O NT_005332AC0159761750206163RH458872569.92    1 AC015976, AC023925, AC053469
S/G/Y/R/B/O NT_005332AC1048011750380493RH689962569.92    1 AC023925, AC053469, AC104801
S/G/Y/R/B/O NT_005332AC1040881751705801RH431  27833.00  1 AC104088
S/G/Y/R/B/O NT_005332AC1040881752604781RH1043672565.44    1 AC104088
S/G/Y/R/B/O NT_005332AC0788831753637913RH568602556.95    1 AC078883
S/G/Y/R/B/O NT_005332AC0788831753637913WI-16044    2900.901 AC078883
S/G/Y/R/B/O NT_005332AC0788831754123683RH690512567.70    1 AC078883, AF166339, L40385
S/G/Y/R/B/O NT_005332AC0788831754297333RH486922565.23    1 AC078883, AF166341
S/G/Y/R/B/O NT_005332AC0788831754425843RH14014  27811.00  1 AC078883
S/G/Y/R/B/O NT_005332AC1046591754899563          
S/G/Y/R/B/O NT_005332AC0938181754919503          
S/G/Y/R/B/O NT_005332AC0187121755370403RH803742559.34    1 AC018712
S/G/Y/R/B/O NT_005332AC0187121755370803RH1032572567.49    2AL157701, AC018712, AL157701
S/G/Y/R/B/O NT_005332AC0187121755372573RH700692567.70    1 AC018712
S/G/Y/R/B/O NT_005332AC0187121755377523RH563132567.7027816.00  1 AC018712
S/G/Y/R/B/O NT_005332AC0187121755377523SGC30925    2871.301 AC018712
S/G/Y/R/B/O NT_005332AC0187121755470373RH1039822567.70    1 AC018712
S/G/Y/R/B/O NT_005332AC0094841758847093RH570912558.40    1AC090040, AC009484, AC016789, AC067851, AC090040
S/G/Y/R/B/O NT_005332AC0094841758847093WI-15265    2885.501AC090040, AC009484, AC016789, AC067851, AC090040
S/G/Y/R/B/O NT_005332AC1040861758969813          
S/G/Y/R/B/O NT_005332AC0190461759124753          
S/G/Y/R/B/O NT_005332AC0134611761641473RH672512567.59    1 AC013461
S/G/Y/R/B/O NT_005332AC0134611761649673RH1025082559.86    1 AC013461
S/G/Y/R/B/O NT_005332AC0134611761653913RH805532575.96    1 AC013461
S/G/Y/R/B/O NT_005332AC0134611761724263RH116972566.26    1 AC013461
S/G/Y/R/B/O NT_005332AC0925731761990233WI-3869    2870.001 AC092573
S/G/Y/R/B/O NT_005332AC0925731762061123RH693412567.70    1 AC092573
S/G/Y/R/B/O NT_005332AC0925731762071803RH942862567.70    1 AC092573
S/G/Y/R/B/O NT_005332AC0925731763029513RH123912567.08    1 AC011667, AC012052, AC092573
S/G/Y/R/B/O NT_005332AC0925731763067063RH362592567.08    1 AC011667, AC012052, AC092573
S/G/Y/R/B/O NT_005332AC0734651763645803          
S/G/Y/R/B/O NT_005332AC0134101765654043WI-4571    2870.601 AC011822, AC013410, AC018930
S/G/Y/R/B/O NT_005332AC1069001767327691AFMB362WA5    2885.501 AC106900
S/G/Y/R/B/O NT_005332AC1108081768621791RH689482567.70    1AC093399, AC016260, AC093399, AC110808
S/G/Y/R/B/O NT_005332AC0933991768247251          
S/G/Y/R/B/O NT_005332AC0167371769078653RH658172567.59    1AC093399, AC110808, AC016260, AC016737, AC093399, AC110808
S/G/Y/R/B/O NT_005332AC0167371769176853RH657322564.72    1AC093399, AC110808, AC016737, AC093399, AC110808
S/G/Y/R/B/O NT_005332AC0167371769247523RH1032072566.26    1AC093399, AC110808, AC016737, AC093399, AC110808
S/G/Y/R/B/O NT_005332AC0167371770280883RH562302566.26    1 AC016737
S/G/Y/R/B/O NT_005332AC0167371770280883SGC31842    2870.701 AC016737
S/G/Y/R/B/O NT_005332AC0134671771073683WI-9970    2845.301 AC013467
S/G/Y/R/B/O NT_005332AC0134671771371773RH481222564.64    1 AC013467


  NT_005332 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005332AC0184701773040063RH699542567.59    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773041643RH711922566.26    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773079523RH659482567.08    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773835343RH570002567.08    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773835343WI-15486    2869.301 AC018470
S/G/Y/R/B/O NT_005332AC0184701773844663RH358072567.59    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773855063RH167502567.90    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773855593RH100492567.39    1 AC018470
S/G/Y/R/B/O NT_005332AC0184701773881413RH1027942567.08    1 AC018470
S/G/Y/R/B/O NT_005332AC0108941774579523RH80787754.19    2AC004948, AC004948, AC010894
S/G/Y/R/B/O NT_005332AC0108941775152153RH695952567.59    1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775173703RH698992567.59    1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775224723RH709332567.59    1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775241133RH688692567.90    1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775268093RH8788  28080.00  1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775287753RH1040212567.08    1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775432063RH925042567.08    1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775472013RH30770  28060.00  1 AC010894
S/G/Y/R/B/O NT_005332AC0108941775774143RH455062574.61    1 AC010894
S/G/Y/R/B/O NT_005332AC1045951776140973          
S/G/Y/R/B/O NT_005332AC0188901777525123RH14668  28064.00  1 AC018890
S/G/Y/R/B/O NT_005332AC0188901777550033RH569292557.16    1 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0188901777550033WI-19142    2890.201 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0188901777550033RH14021  28064.00  1 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0188901777554853RH708252572.14    1 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0188901777556313RH562542573.36    1 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0188901777556313WI-15872    2870.901 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0188901777557733RH127692574.71    1 AC018890, AC025927
S/G/Y/R/B/O NT_005332AC0205961778293953          
S/G/Y/R/B/O NT_005332AC0074351780279183RH32287  28090.00  1 AC007435, AL161794
S/G/Y/R/B/O NT_005332AC0074351780279183SGC31988    2870.801 AC007435, AL161794
S/G/Y/R/B/O NT_005332AC0074351780279223RH809022567.08    1 AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332AC0074351780287963RH562922576.49    1 AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332AC0074351780287963SGC38090    2886.101 AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332AC0074351780299203RH564182576.78    1 AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332AC0074351780299203WI-18856    2870.801 AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332AC0074351780597303RH802442576.35    1 AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332AC0742911780785363          
S/G/Y/R/B/O NT_005332AL3571281780883331          
S/G/Y/R/B/O NT_005332AC0966491781314193RH464342578.83    1AL357128, AC011574, AC096649, AL357128
S/G/Y/R/B/O NT_005332AC0966491781320823RH989142577.44    2AL357128, AC011574, AC096649, AL357128
S/G/Y/R/B/O NT_005332AC0966491781333543RH166342576.07    1AL357128, AC011574, AC096649, AL357128
S/G/Y/R/B/O NT_005332AC0966491782610583RH30771  28101.00  1 AC096649
S/G/Y/R/B/O NT_005332AC0966491782610583RH155712580.66    1 AC096649
S/G/Y/R/B/O NT_005332AC0934591782885363          
S/G/Y/R/B/O NT_005332AC0693841783630633          
S/G/Y/R/B/O NT_005332AC1039161785280383          
S/G/Y/R/B/O NT_005332AC0167611787635693WI-4448    2873.601 AC016761
S/G/Y/R/B/O NT_005332AC0167511787892063RH986502576.07    1 AC016751
S/G/Y/R/B/O NT_005332AC0167511787986253RH498181293.77  1312.502AC104506, AC016751, AC104506


  NT_005332 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005332AC0167511788843773RH809322575.44    1 AC016751
S/G/Y/R/B/O NT_005332AC0167511788849773RH570862576.28    1 AC016751
S/G/Y/R/B/O NT_005332AC0167511788849773WI-6655    2872.801 AC016751
S/G/Y/R/B/O NT_005332AC0169151789532503RH30772  28128.00  1 AC016915
S/G/Y/R/B/O NT_005332AC0093361790796123RH181192576.07    1 AC009336
S/G/Y/R/B/O NT_005332AC0093361790869483RH180892576.07    1 AC009336
S/G/Y/R/B/O NT_005332AC0093361790876313RH42799  28128.00  1 AC009336
S/G/Y/R/B/O NT_005332AC0093361791117233RH708242576.07    1 AC009336, X17360
S/G/Y/R/B/O NT_005332AC0093361791288703RH692632576.07    1 AC009336, D11117, Y09980
S/G/Y/R/B/O NT_005332AC0093361791344343RH922632577.41    1 AC009336
S/G/Y/R/B/O NT_005332AC0093361791461923RH688842577.44    1 AC009336
S/G/Y/R/B/O NT_005332 - RH1025422566.26    0  
S/G/Y/R/B/O NT_005332 - RH1853  27900.00  1AC009967, AC009967, X97869
S/G/Y/R/B/O NT_005332 - WI-11019    2847.401AC105396, AC012552, AC105396
S/G/Y/R/B/O NT_005332 - RH109432567.12    1AC009967, AC009967
S/G/Y/R/B/O NT_005332 - RH32844  28085.00  0AC007435, AC007435, AC074393, AL161794
S/G/Y/R/B/O NT_005332 - RH168432567.18    1AC009967, AC009967
S/G/Y/R/B/O NT_005332 - RH33000  27886.00  1AC016772, AC016772
S/G/Y/R/B/O NT_005332 - RH267082557.22    1AC023270, AC023270, AJ277892
S/G/Y/R/B/O NT_005332 - RH33605  27905.00  1AC079122, AC092641, AC079122, AC092641
S/G/Y/R/B/O NT_005332 - RH364402566.26    0  
S/G/Y/R/B/O NT_005332 - RH453612566.98    1AC079122, AC092641, AC079122, AC092641
S/G/Y/R/B/O NT_005332 - RH561912567.18    2AC016772, AC093899, AC016772, AC093899
S/G/Y/R/B/O NT_005332 - RH564542566.72    1AC079122, AC092641, AC079122, AC092641
S/G/Y/R/B/O NT_005332 - RH564612566.62    1AC016772, AC016772
S/G/Y/R/B/O NT_005332 - RH566852566.57    1AC011238, AC011238, AC016715
S/G/Y/R/B/O NT_005332 - RH567342557.37    1AC062033, AC021823, AC062033
S/G/Y/R/B/O NT_005332 - RH567562566.87    1AC016772, AC016772
S/G/Y/R/B/O NT_005332 - RH568052566.62    1AC092641, AC092641
S/G/Y/R/B/O NT_005332 - RH659732557.22    1AC009948, AC009948, AC105937
S/G/Y/R/B/O NT_005332 - RH703552567.59    0  
S/G/Y/R/B/O NT_005332 - RH709362567.18    1AC079122, AC092641, AC079122, AC092641
S/G/Y/R/B/O NT_005332 - RH929242557.65    1AC105396, AC012552, AC105396
S/G/Y/R/B/O NT_005332 - RH935982566.98    1AC079122, AC092641, AC079122, AC092641
S/G/Y/R/B/O NT_005332 - RH981752557.37    1 AJ277892, X92412
S/G/Y/R/B/O NT_005332 - RH981822567.18    1AC016772, AC016772
S/G/Y/R/B/O NT_005332 - RH982402566.98    0  
S/G/Y/R/B/O NT_005332 - RH982452558.96    0