Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005389

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005389	AC097371	59186194	3	RH33456			2	2293.00	2	238.40	1		AC097371, AC116628
S/G/Y/R/B/O	NT_005389	AC097371	59186194	3	RH56875	2	174.05					1		AC097371, AC116628
S/G/Y/R/B/O	NT_005389	AC097371	59186364	3	RH16299	2	178.00					1		AC097371, AC116628
S/G/Y/R/B/O	NT_005389	AC069336	59252193	3	CHLC.GATA23H01					2	240.80	1		AC069336
S/G/Y/R/B/O	NT_005389	AC068276	59273893	3
S/G/Y/R/B/O	NT_005389	AC073875	59490535	3	WI-11399					2	237.60	1		AC073875
S/G/Y/R/B/O	NT_005389	AC073875	59490535	3	RH56348	2	173.43					1		AC073875
S/G/Y/R/B/O	NT_005389	AC092607	59578640	3
S/G/Y/R/B/O	NT_005389	AC068914	59651605	3
S/G/Y/R/B/O	NT_005389	AC068193	59940218	3	RH93177	2	179.54					1		AC013329, AC068193
S/G/Y/R/B/O	NT_005389	AC073215	59948455	3	RH66429	2	178.91					1		AC013329, AC073215
S/G/Y/R/B/O	NT_005389	AC007250	60056343	3	RH37791			2	2317.00			1		AC007250
S/G/Y/R/B/O	NT_005389	AC007250	60060830	3	RH56845	2	182.04			2	246.10	1		AC007250
S/G/Y/R/B/O	NT_005389	AC007250	60149512	3	RH80696	2	186.58					2		AC007250, AL356585
S/G/Y/R/B/O	NT_005389	AC007238	60231453	3
S/G/Y/R/B/O	NT_005389	AC107076	60400400	3
S/G/Y/R/B/O	NT_005389	AC007367	60418948	3
S/G/Y/R/B/O	NT_005389	AC007252	60616226	3
S/G/Y/R/B/O	NT_005389	AC007077	60827790	3	RH56555	2	182.14	2	2335.00	2	246.10	1		AC007077
S/G/Y/R/B/O	NT_005389	AC007077	60846172	3	AFMA047ZC9					2	254.00	1		AC007077
S/G/Y/R/B/O	NT_005389	AC007092	60961702	3	RH31610			2	2332.00			1		AC007092, AC007158
S/G/Y/R/B/O	NT_005389	AC007131	61181629	3	RH13706	2	184.06					1		AC007131
S/G/Y/R/B/O	NT_005389	AC114792	61274660	1
S/G/Y/R/B/O	NT_005389		-		RH104336	2	180.53					1		AC015740
S/G/Y/R/B/O	NT_005389		-		RH10523	2	182.04					1	AC005369, AC090439, AC116353,	AC005369, AC010687, AC011398, AC090439, AC116353
S/G/Y/R/B/O	NT_005389		-		RH45041	2	180.53					1	AC009970,	AC009970, AC040935