Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005370

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005370	AC073410	206406087	3	RH69577	2	628.34					1		AC073410
S/G/Y/R/B/O	NT_005370	AC009960	206472643	3	RH94008	2	631.20					1		AC009960
S/G/Y/R/B/O	NT_005370	AC009960	206472993	3	RH68426	2	631.20					1		AC009960
S/G/Y/R/B/O	NT_005370	AC009960	206476224	3	RH48774	2	631.20					1		AC009960
S/G/Y/R/B/O	NT_005370	AC009960	206477455	3	RH69994	2	631.30					1		AC009960
S/G/Y/R/B/O	NT_005370	AC009960	206581894	3	RH56280	2	631.20			2	954.40	1		AC009960
S/G/Y/R/B/O	NT_005370	AC009960	206581894	3	RH32966			2	8850.00			1		AC009960
S/G/Y/R/B/O	NT_005370	AC009960	206582067	3	RH16624	2	627.12					1		AC009960
S/G/Y/R/B/O	NT_005370	AC098831	206679875	3	RH102151	2	627.12					1	AC013245,	AC013245, AC098831
S/G/Y/R/B/O	NT_005370	AC098831	206686462	3	RH57005	2	629.38			2	954.60	1	AC013245,	AC013245, AC098831
S/G/Y/R/B/O	NT_005370	AC098831	206689505	3	RH48349	2	631.30					1	AC013245,	AC013245, AC098831
S/G/Y/R/B/O	NT_005370	AC013245	206707347	1	RH30778			2	8857.00			1		AC013245
S/G/Y/R/B/O	NT_005370	AC010900	206787709	3	RH93944	2	631.20					1	AC013245,	AC010900, AC013245, AC080084
S/G/Y/R/B/O	NT_005370	AC010900	206897824	3	RH68899	2	631.20					1		AC010900, AC080084
S/G/Y/R/B/O	NT_005370	AC010900	206898180	3	RH69596	2	631.20					1		AC010900, AC080084
S/G/Y/R/B/O	NT_005370	AC023271	206925805	3
S/G/Y/R/B/O	NT_005370	AC011737	207134856	3	RH56890	2	628.76			2	952.90	1		AC011737
S/G/Y/R/B/O	NT_005370	AC011737	207134902	3	RH68406	2	631.20					1		AC011737
S/G/Y/R/B/O	NT_005370	AC011737	207135384	3	RH56771	2	629.07			2	954.40	1		AC011737
S/G/Y/R/B/O	NT_005370	AC011737	207147768	3	RH69647	2	631.30					1		AC011737
S/G/Y/R/B/O	NT_005370	AC080075	207208696	3	RH46483	2	627.12					1		AC080075
S/G/Y/R/B/O	NT_005370	AC080075	207209413	3	RH65777	2	631.30					1		AC080075
S/G/Y/R/B/O	NT_005370	AC018891	207337628	3	RH70596	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207339667	3	RH93388	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207341488	3	RH68335	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207342329	3	RH12791	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207344212	3	RH68933	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207345550	3	RH56979	2	631.40	2	8926.00	2	954.40	1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207349406	3	RH103294	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207355068	3	RH45563	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC018891	207384082	3	RH33303			2	8873.00			1		AC018891
S/G/Y/R/B/O	NT_005370	AC018891	207384148	3	RH16509	2	631.20					1		AC018891, AC090438
S/G/Y/R/B/O	NT_005370	AC069314	207474457	3
S/G/Y/R/B/O	NT_005370	AF225899	207645368	3	RH68962	2	633.02					1		AF225899, M37815
S/G/Y/R/B/O	NT_005370	AC010138	207700203	3	RH4699	2	631.20			2	956.00	1		AC010138, AF411058
S/G/Y/R/B/O	NT_005370	AC010138	207700203	3	RH33611			2	8977.00			1		AC010138, AF411058
S/G/Y/R/B/O	NT_005370	AC010138	207733210	3	WI-3292					2	956.00	1		AC010138, AF225900, AF411058
S/G/Y/R/B/O	NT_005370	AC103880	207871672	3	RH103964	2	631.20					1	AC009965,	AC009965, AC103880, AF411058, AF411059
S/G/Y/R/B/O	NT_005370	AC009965	207900768	3	WI-5293					2	954.40	1		AC009965, AF411059
S/G/Y/R/B/O	NT_005370	AC009498	208186312	3	WI-10029					2	954.30	1		AC009498
S/G/Y/R/B/O	NT_005370	AC106901	208272700	3	CHLC.GATA52A04					2	954.40	1		AC106901
S/G/Y/R/B/O	NT_005370	AC016903	208341901	3
S/G/Y/R/B/O	NT_005370	AC007736	208627700	3	RH56227	2	631.30	2	8988.00	2	954.40	1		AC007736
S/G/Y/R/B/O	NT_005370	AC007736	208627799	3	RH16290	2	625.87					1		AC007736
S/G/Y/R/B/O	NT_005370	AC007736	208651296	3	RH56893	2	633.81			2	954.30	1		AC007736
S/G/Y/R/B/O	NT_005370	AC007736	208674827	3	RH30779			2	8943.00			1		AC007736
S/G/Y/R/B/O	NT_005370	AC008168	208684689	3
S/G/Y/R/B/O	NT_005370	AC009316	208771319	3	RH36347	2	631.20					1		AC009316
S/G/Y/R/B/O	NT_005370	AC009316	208776556	3	RH102589	2	631.30					1		AC009316
S/G/Y/R/B/O	NT_005370	AC009316	208776759	3	RH80884	2	626.86					1		AC009316

NT_005370 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_005370	AC108468	208886813	3
S/G/Y/R/B/O	NT_005370	AC011750	208928838	3	RH45481	2	633.10					1	AC011750
S/G/Y/R/B/O	NT_005370	AC011750	208952962	3	RH57147	2	631.20			2	954.40	1	AC011750
S/G/Y/R/B/O	NT_005370	AC008171	209075136	3	AFM224ZG5					2	954.40	1	AC008171, AC079153
S/G/Y/R/B/O	NT_005370	AC008171	209093655	3	WI-9869					2	954.40	1	AC008171, AC079153
S/G/Y/R/B/O	NT_005370	AC007465	209260208	3	RH36494	2	637.39					1	AC007465, AC046197
S/G/Y/R/B/O	NT_005370	AC007746	209346855	3
S/G/Y/R/B/O	NT_005370	AC007385	209498885	3	RH46159	2	634.89					1	AC007385
S/G/Y/R/B/O	NT_005370	AC007385	209528674	3	RH67049	2	637.39					1	AC007385
S/G/Y/R/B/O	NT_005370	AC007385	209530249	3	RH66994	2	637.39					1	AC007385
S/G/Y/R/B/O	NT_005370	AC007385	209530300	3	RH26860	2	635.20					1	AC007385
S/G/Y/R/B/O	NT_005370	AC007385	209538050	3	WI-3694					2	958.90	1	AC007385
S/G/Y/R/B/O	NT_005370	AC007362	209593204	3	RH68921	2	637.39					1	AC007362, AC067978, AF281074
S/G/Y/R/B/O	NT_005370	AC007362	209622396	3	RH36188	2	637.39					1	AC007362, AC067978, AF281074
S/G/Y/R/B/O	NT_005370	AC007362	209689754	3	RH99006	2	635.57					1	AC007362, AF281074
S/G/Y/R/B/O	NT_005370	AC007561	209708283	3	RH56571	2	635.31			2	957.30	1	AC007561
S/G/Y/R/B/O	NT_005370	AC007679	209904977	3	RH26410	2	637.39					1	AC007679
S/G/Y/R/B/O	NT_005370	AC007679	209906720	3	RH70024	2	637.39					1	AC007679, AC021980
S/G/Y/R/B/O	NT_005370	AC092677	209971378	3
S/G/Y/R/B/O	NT_005370	AC007383	209994480	3	D2S155					2	961.10	1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	209994499	3	RH1022			2	9014.00			1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210023868	3	RH103825	2	637.29					1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210025167	3	RH38049			2	9004.00			1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210025204	3	RH80728	2	634.78					1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210025921	3	RH56919	2	635.73			2	960.70	1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210030222	3	RH66533	2	634.74					1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210031738	3	RH80549	2	636.88					1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210033526	3	RH48316	2	627.33					1	AC007383
S/G/Y/R/B/O	NT_005370	AC007383	210034270	3	RH14146			2	9007.00			1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210034481	3	RH70856	2	637.29					1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC007383	210086447	3	RH70567	2	637.29					1	AC007383, AC021980
S/G/Y/R/B/O	NT_005370	AC017081	210186350	3
S/G/Y/R/B/O	NT_005370	AC009225	210436319	3	RH42525	2	639.21			2	960.70	1	AC009225
S/G/Y/R/B/O	NT_005370	AC079136	210495164	3
S/G/Y/R/B/O	NT_005370	AC010731	210506574	3	RH81077	2	643.87					1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210513987	3	RH74627			2	9022.00			1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210526381	3	RH16640	2	639.21					1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210527945	3	RH66377	2	636.15					1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210527954	3	RH8917			2	9004.00			1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210528050	3	RH25038	2	637.60					1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210529059	3	RH102758	2	637.39					1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210529817	3	RH66921	2	640.43					1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210531030	3	RH56743	2	637.19			2	960.70	1	AC010731
S/G/Y/R/B/O	NT_005370	AC010731	210531232	3	RH66871	2	640.43					1	AC010731
S/G/Y/R/B/O	NT_005370	AC008269	210648696	3	RH46229	2	646.24					1	AC008269
S/G/Y/R/B/O	NT_005370	AC008269	210699414	3	RH68608	2	641.95					1	AC008269
S/G/Y/R/B/O	NT_005370	AC008269	210702641	3	RH45208	2	641.95					1	AC008269
S/G/Y/R/B/O	NT_005370	AC008269	210705961	3	RH68229	2	645.51					1	AC008269
S/G/Y/R/B/O	NT_005370	AC008269	210706231	3	RH56762	2	641.95					1	AC008269
S/G/Y/R/B/O	NT_005370	AC008269	210706231	3	WI-18179					2	970.50	1	AC008269

NT_005370 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005370	AC019052	210830541	3	WI-4795					2	968.40	1		AC019052
S/G/Y/R/B/O	NT_005370	AC008062	210986915	3	RH103134	2	641.95					1		AC008062
S/G/Y/R/B/O	NT_005370	AC008062	210990929	3	RH18337	2	641.95					1	AC061708, AC068853,	AC008062, AC023238, AC061708, AC068853, AC078779
S/G/Y/R/B/O	NT_005370	AC007879	211055070	3	WI-13455					2	966.90	1		AC007879, AC078779
S/G/Y/R/B/O	NT_005370	AC007879	211055070	3	RH56841	2	645.51					1		AC007879, AC078779
S/G/Y/R/B/O	NT_005370	AC007879	211087084	3	AFMA337XG9					2	965.90	1		AC007879, AC078779
S/G/Y/R/B/O	NT_005370	AC007879	211154499	3	D2S355					2	968.40	1		AC007879
S/G/Y/R/B/O	NT_005370	AC007879	211154499	3	RH13633	2	641.95	2	9059.00			1		AC007879
S/G/Y/R/B/O	NT_005370		-		RH45224	2	631.30					0
S/G/Y/R/B/O	NT_005370		-		RH32815			2	9001.00			1	AC006994,	AC006994
S/G/Y/R/B/O	NT_005370		-		RH32883			2	8935.00			1	AC006037, AC027778,	AC006037, AC027778
S/G/Y/R/B/O	NT_005370		-		RH56156	2	635.31			2	954.40	0	AC007362,	AC007362, AF281074
S/G/Y/R/B/O	NT_005370		-		RH57046	2	631.20			2	957.30	0		AC090438