Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_025652

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_025652	AC092582	179208485	1
S/G/Y/R/B/O	NT_025652	AC016739	179265140	3
S/G/Y/R/B/O	NT_025652	AC073069	179411142	3	RH67510	2	576.07					1		AC073069
S/G/Y/R/B/O	NT_025652	AC068706	179439290	3
S/G/Y/R/B/O	NT_025652	AC017048	179703298	3	RH69215	2	576.02					1	AC092582,	AC017048, AC022186, AC092582
S/G/Y/R/B/O	NT_025652	AC017048	179731665	3	RH102713	2	578.54					1	AC092582,	AC017048, AC092582
S/G/Y/R/B/O	NT_025652	AC079803	179745809	3
S/G/Y/R/B/O	NT_025652	AC092162	179754657	3
S/G/Y/R/B/O	NT_025652	AC073636	179953503	3	RH33687			2	8162.00			1		AC012452, AC073636, AC074009
S/G/Y/R/B/O	NT_025652	AC073636	179977411	3	WI-5555					2	874.90	1		AC012452, AC073636, AC074009
S/G/Y/R/B/O	NT_025652	AC074286	180121918	3	WI-11179					2	875.80	1		AC074286
S/G/Y/R/B/O	NT_025652	AC079305	180293705	3	RH56742	2	575.34			2	875.80	1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180296180	3	RH69975	2	576.02					1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180296658	3	RH91765	2	576.13					1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180297049	3	RH17004	2	575.60					1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180303769	3	RH2112			2	8168.00			1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180303883	3	RH25201	2	576.02					1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180304742	3	RH68866	2	576.02					1		AC079305, AC096657
S/G/Y/R/B/O	NT_025652	AC079305	180332267	3	RH70788	2	576.02					1		AC079305
S/G/Y/R/B/O	NT_025652	AC019080	180428970	3	RH27138	2	575.13					1		AC019080
S/G/Y/R/B/O	NT_025652	AC019080	180440145	3	D2S148					2	887.20	1		AC019080
S/G/Y/R/B/O	NT_025652	AC019080	180440145	3	RH35257			2	8187.00			1		AC019080
S/G/Y/R/B/O	NT_025652	AC016762	180541480	3
S/G/Y/R/B/O	NT_025652	AC073834	180612555	1	RH56635	2	574.02			2	883.40	1		AC073834
S/G/Y/R/B/O	NT_025652	AC073834	180615066	1	RH69481	2	575.13					1		AC073834
S/G/Y/R/B/O	NT_025652	AC073834	180617069	1	RH65564	2	575.13					1		AC073834
S/G/Y/R/B/O	NT_025652	AC073834	180618687	1	RH99117	2	575.13					1		AC073834
S/G/Y/R/B/O	NT_025652	AC073834	180624157	1	RH12009	2	575.13					1		AC073834
S/G/Y/R/B/O	NT_025652	AC073834	180654250	1	RH30773			2	8225.00			1		AC073834
S/G/Y/R/B/O	NT_025652	AC073834	180696996	1	RH91242	2	576.07					1		AC073834
S/G/Y/R/B/O	NT_025652	AC083824	180752781	3
S/G/Y/R/B/O	NT_025652	AC012499	180832360	3	RH29973			2	8249.00			1		AC012499
S/G/Y/R/B/O	NT_025652	AC073892	180937785	3
S/G/Y/R/B/O	NT_025652	AC011998	181199479	3	RH56299	2	574.97	2	8264.00	2	875.50	1	AC011238,	AC011238
S/G/Y/R/B/O	NT_025652	AC011998	181199918	3	RH56865	2	575.44			2	882.60	1	AC011238,	AC011238, AC011998
S/G/Y/R/B/O	NT_025652	AC011238	181202854	3	WI-13021					2	878.10	1		AC011238, AC016715
S/G/Y/R/B/O	NT_025652	AC011238	181202854	3	RH56685	2	566.57					1		AC011238, AC016715
S/G/Y/R/B/O	NT_025652	AC011238	181210247	3	RH69400	2	575.13					1		AC011238, AC016715
S/G/Y/R/B/O	NT_025652	AC011238	181256437	3	WI-3632					2	879.60	1		AC011238, AC016715
S/G/Y/R/B/O	NT_025652	AC011743	181354576	3
S/G/Y/R/B/O	NT_025652	AC009948	181472360	3	RH12373	2	574.97					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181472381	3	RH56118	2	575.34			2	879.60	1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181472505	3	RH9938	2	575.13					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181505008	3	RH17055	2	575.13					2		AC009948, AC026010, AC105937, Z84477
S/G/Y/R/B/O	NT_025652	AC009948	181507375	3	RH103045	2	574.97					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181509424	3	RH65973	2	557.22					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181518033	3	RH16629	2	575.13					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181518905	3	RH56665	2	575.96			2	878.10	1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181518997	3	RH16716	2	575.13					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181534643	3	RH91939	2	575.96					1		AC009948, AC105937

NT_025652 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_025652	AC009948	181537184	3	RH46430	2	574.97					1		AC009948, AC105937
S/G/Y/R/B/O	NT_025652	AC009948	181578497	3	RH66213	2	576.17					1		AC009948
S/G/Y/R/B/O	NT_025652	AC009948	181587634	3	RH11854	2	576.28					1		AC009948
S/G/Y/R/B/O	NT_025652	AC009948	181605494	3	RH65621	2	575.96					1		AC009948, AJ277892, X92412
S/G/Y/R/B/O	NT_025652	AC009948	181618390	3	RH98175	2	557.37					1		AJ277892, X92412
S/G/Y/R/B/O	NT_025652	AC009948	181623136	3	RH98821	2	575.03					1		AC009948, AJ277892
S/G/Y/R/B/O	NT_025652	AC009948	181625428	3	RH65575	2	575.96					1		AC009948, AJ277892
S/G/Y/R/B/O	NT_025652	AC009948	181627114	3	RH9801	2	574.97					1		AC009948, AJ277892
S/G/Y/R/B/O	NT_025652	AC009948	181633470	3	RH48674	2	575.96					1		AC009948, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181672278	3	RH65766	2	574.97					1		AC010680, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181697923	3	RH17670	2	575.03					1		AC010680, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181726972	3	WI-10343					2	878.10	3		AC010680, AC010680, AC010680, AJ277892, AJ277892, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181731232	3	WI-10343					2	878.10	3		AC010680, AC010680, AC010680, AJ277892, AJ277892, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181735493	3	WI-10343					2	878.10	3		AC010680, AC010680, AC010680, AJ277892, AJ277892, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181762534	3	RH91877	2	575.03					1		AC010680, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181784610	3	RH27164	2	575.34					1		AC010680, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181803686	3	RH44253	2	575.13					1		AC010680, AJ277892
S/G/Y/R/B/O	NT_025652	AC010680	181803695	3	RH25710	2	574.97					1		AC010680, AJ277892
S/G/Y/R/B/O	NT_025652	AC023270	181834109	3	D2S385					2	875.50	1		AC023270
S/G/Y/R/B/O	NT_025652	AC023270	181834264	3	RH38577			2	8271.00			1		AC023270, AJ277892
S/G/Y/R/B/O	NT_025652	AC023270	181849088	3	RH9818	2	575.92					1		AC023270, AJ277892
S/G/Y/R/B/O	NT_025652	AC023270	181850882	3	RH26708	2	557.22					1		AC023270, AJ277892
S/G/Y/R/B/O	NT_025652	AC023270	181864957	3	D2S324					2	876.70	1		AJ277892
S/G/Y/R/B/O	NT_025652	AC023270	181864957	3	RH934			2	8284.00			1		AJ277892
S/G/Y/R/B/O	NT_025652	AC093792	181937468	3
S/G/Y/R/B/O	NT_025652	AC092640	182007012	3
S/G/Y/R/B/O	NT_025652	AC016755	182175884	3	RH37899			2	8335.00			1		AC016755
S/G/Y/R/B/O	NT_025652	AC016755	182175978	3	RH56423	2	575.44			2	870.70	1		AC016755
S/G/Y/R/B/O	NT_025652	AC016755	182178644	3	RH56389	2	575.34			2	870.60	1		AC016755
S/G/Y/R/B/O	NT_025652	AC016755	182182101	3	RH67371	2	575.92					1		AC016755
S/G/Y/R/B/O	NT_025652	AC016755	182183024	3	RH17512	2	576.02					1		AC016755
S/G/Y/R/B/O	NT_025652	AC016755	182205492	3	RH69360	2	576.02					1		AC016755
S/G/Y/R/B/O	NT_025652	AC093911	182310257	3	RH65909	2	577.13					1		AC093911
S/G/Y/R/B/O	NT_025652		-		WI-13407					2	847.60	1	AC105396,	AC105396
S/G/Y/R/B/O	NT_025652		-		WI-2535					2	859.30	1	AC012669, AC093750,	AC012669, AC019035, AC093750
S/G/Y/R/B/O	NT_025652		-		WI-5538					2	867.60	1	AC009478, AC084363,	AC009478, AC084363
S/G/Y/R/B/O	NT_025652		-		TIGR-A004T05					2	869.20	1	AC062033,	AC021823, AC062033
S/G/Y/R/B/O	NT_025652		-		WI-15486					2	869.30	1	AC018470,	AC018470
S/G/Y/R/B/O	NT_025652		-		WI-21784					2	869.40	1	AC068196, AC104076,	AC068196, AC104076
S/G/Y/R/B/O	NT_025652		-		WI-3869					2	870.00	1	AC092573,	AC092573
S/G/Y/R/B/O	NT_025652		-		SGC30987					2	870.20	1	AC092642,	AC021823, AC092642
S/G/Y/R/B/O	NT_025652		-		SGC33600					2	870.20	1	AC092642,	AC021823, AC092642
S/G/Y/R/B/O	NT_025652		-		WI-5752					2	870.20	1	AC013473, AC107211,	AC013473, AC107211
S/G/Y/R/B/O	NT_025652		-		WI-4571					2	870.60	1	AC013410,	AC011822, AC013410, AC018930
S/G/Y/R/B/O	NT_025652		-		SGC31842					2	870.70	1	AC016737,	AC016737
S/G/Y/R/B/O	NT_025652		-		WI-18856					2	870.80	1	AC007435,	AC007435, AC074393, AL161794
S/G/Y/R/B/O	NT_025652		-		SGC31988					2	870.80	1	AC007435,	AC007435, AL161794
S/G/Y/R/B/O	NT_025652		-		WI-15872					2	870.90	1	AC018890,	AC018890, AC025927
S/G/Y/R/B/O	NT_025652		-		SGC30595					2	870.90	1	AC092642,	AC021823, AC092642
S/G/Y/R/B/O	NT_025652		-		WI-870					2	871.20	1	AC068278,	AC068278

NT_025652 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_025652	-	RH56987	2	575.03	2	871.20	0	AC007435,	AC007435, AC074393, AL161794
S/G/Y/R/B/O	NT_025652	-	RH65366	2	575.65			0
S/G/Y/R/B/O	NT_025652	-	SGC30925			2	871.30	1	AC018712,	AC018712
S/G/Y/R/B/O	NT_025652	-	RH93339	2	574.97			0
S/G/Y/R/B/O	NT_025652	-	WI-6655			2	872.80	1	AC016751,	AC016751
S/G/Y/R/B/O	NT_025652	-	WI-4448			2	873.60	1	AC016761,	AC016761
S/G/Y/R/B/O	NT_025652	-	AFMB362WA5			2	885.50	1	AC106900,	AC106900
S/G/Y/R/B/O	NT_025652	-	WI-15265			2	885.50	1	AC009484, AC090040,	AC009484, AC016789, AC067851, AC090040
S/G/Y/R/B/O	NT_025652	-	SGC38090			2	886.10	1	AC007435,	AC007435, AC074393, AL161794