Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005337

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005337	AC023273	220372481	1
S/G/Y/R/B/O	NT_005337	AC098820	220441648	1	RH12875	2	671.89					1	AC023273,	AC023273, AC098820, AF210842
S/G/Y/R/B/O	NT_005337	AC073321	220461197	3	RH36187	2	675.56					1	AC023273, AC098820,	AC023273, AC073321, AC098820
S/G/Y/R/B/O	NT_005337	AC073321	220461343	3	WI-16081					2	993.60	1	AC023273, AC098820,	AC023273, AC073321, AC098820
S/G/Y/R/B/O	NT_005337	AC073321	220461343	3	RH56396	2	666.99					1	AC023273, AC098820,	AC023273, AC073321, AC098820
S/G/Y/R/B/O	NT_005337	AC073321	220463703	3	RH65510	2	666.19					1	AC023273, AC098820,	AC023273, AC073321, AC098820
S/G/Y/R/B/O	NT_005337	AC007563	220620013	3	RH28680	19	248.13					4	AC083805, AC104082, AL117339, AL136526,	AC012264, AC073122, AC083805, AC104082, AL117339, AL136526, AL591107
S/G/Y/R/B/O	NT_005337	AC007563	220623052	3	RH79685	2	671.79					1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220631000	3	WI-20588					2	994.60	1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220631000	3	RH56260	2	667.56					1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220631782	3	SGC31996					2	994.70	1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220631782	3	RH56354	2	667.09					1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220634660	3	RH13879			2	9347.00			1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220634714	3	RH13942			2	9347.00			1		AC007563
S/G/Y/R/B/O	NT_005337	AC007563	220716124	3	WI-6439					2	996.80	1		AC007563, AC079929
S/G/Y/R/B/O	NT_005337	AC007563	220731898	3	WI-10767					2	1002.60	1		AC079929
S/G/Y/R/B/O	NT_005337	AC007563	220742471	3	WI-4668					2	994.70	1		AC007563
S/G/Y/R/B/O	NT_005337	AC007557	220789811	3
S/G/Y/R/B/O	NT_005337	AC007749	220981244	3	RH29974			2	9347.00			1		AC007749
S/G/Y/R/B/O	NT_005337	AC007749	221054021	3	RH13408	2	671.79	2	9340.00			1		AC007749
S/G/Y/R/B/O	NT_005337	AC010887	221085437	3
S/G/Y/R/B/O	NT_005337	AC009492	221242917	3	RH80987	2	667.82					1		AC009492
S/G/Y/R/B/O	NT_005337	AC009492	221278333	3	RH93263	2	667.98					1		AC009492
S/G/Y/R/B/O	NT_005337	AC009492	221341034	3	CHLC.GATA29E02					2	996.80	1		AC009492, AC022195
S/G/Y/R/B/O	NT_005337	AC011235	221415830	3	D2S295					2	1000.30	1		AC011235, AC022195
S/G/Y/R/B/O	NT_005337	AC011235	221415830	3	RH42242	2	675.46					1		AC011235, AC022195
S/G/Y/R/B/O	NT_005337	AC011235	221427234	3	RH103713	2	670.08					1		AC011235, AC022195
S/G/Y/R/B/O	NT_005337	AC010886	221579945	3
S/G/Y/R/B/O	NT_005337	AC093041	221738532	3
S/G/Y/R/B/O	NT_005337	AC009469	221761862	3	RH102642	2	678.18					1		AC009469
S/G/Y/R/B/O	NT_005337	AC009469	221868286	3	D2S173					2	1001.70	1		AC009469
S/G/Y/R/B/O	NT_005337	AC009469	221868286	3	RH908			2	9415.00			1		AC009469
S/G/Y/R/B/O	NT_005337	AC010136	222018963	3	RH56541	2	679.36					1		M99412
S/G/Y/R/B/O	NT_005337	AC010136	222018963	3	RH33569			2	9454.00	2	1009.20	1		M99412
S/G/Y/R/B/O	NT_005337	AC010136	222019058	3	RH69171	2	680.95					1		M98335, M99412, U11869
S/G/Y/R/B/O	NT_005337		-		RH79632	2	676.36					1	AC008279,	AC008279
S/G/Y/R/B/O	NT_005337		-		WI-8140					2	998.60	1	AC008123, AC012513,	AC008123, AC012513
S/G/Y/R/B/O	NT_005337		-		RH98688	2	677.58					0
S/G/Y/R/B/O	NT_005337		-		WI-16791					2	999.10	1	AC010686,	AC009521, AC010686
S/G/Y/R/B/O	NT_005337		-		WI-14730					2	999.10	1	AC008123, AC012513, AC069155,	AC008123, AC012513, AC069155
S/G/Y/R/B/O	NT_005337		-		SGC33338					2	1002.60	1	AC008123, AC012513,	AC008123, AC012513
S/G/Y/R/B/O	NT_005337		-		SGC32061					2	1002.60	1	AC008123, AC012513, AC069155,	AC008123, AC012513, AC069155
S/G/Y/R/B/O	NT_005337		-		TIGR-A004W06					2	1002.80	1	AC008123, AC012513,	AC008123, AC012513