Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005375

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_005375	AC024409	64122703	1
S/G/Y/R/B/O	NT_005375	AC084394	64139369	1
S/G/Y/R/B/O	NT_005375	AC074391	64159411	3
S/G/Y/R/B/O	NT_005375	AC023351	64369106	3
S/G/Y/R/B/O	NT_005375	AC009503	64410533	3	D2S296					2	278.80	1	AC009503
S/G/Y/R/B/O	NT_005375	AC007741	64621146	3	RH31615			2	2891.00			1	AC007741
S/G/Y/R/B/O	NT_005375	AC007389	64875004	3	RH45573	2	203.65					1	AC007389, AC021014
S/G/Y/R/B/O	NT_005375	AC007389	64889506	3	RH99109	10	374.68					1	AC007389
S/G/Y/R/B/O	NT_005375	AC012370	64988403	3	RH31616			2	2873.00			1	AC012370
S/G/Y/R/B/O	NT_005375	AC012370	64994216	3	RH16568	2	201.61					1	AC012370
S/G/Y/R/B/O	NT_005375	AC097503	65076983	3	RH14670			2	2852.00			1	AC097503
S/G/Y/R/B/O	NT_005375	AC097503	65089188	3	RH18879	2	203.18					1	AC097503
S/G/Y/R/B/O	NT_005375	AC097503	65098746	3	WI-5516					2	272.40	1	AC097503
S/G/Y/R/B/O	NT_005375	AC007318	65115636	3	RH68590	2	201.61					1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65115775	3	RH67754	2	202.76					1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65119290	3	RH16859	2	202.76					1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65120683	3	RH14671			2	2864.00			1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65294517	3	RH32448			2	2881.00	2	278.40	1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65303253	3	RH56704	2	203.29			2	279.40	1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65305898	3	RH56368	2	203.29	2	2527.00	2	278.10	1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65305983	3	RH12272	2	201.51					1	AC007318
S/G/Y/R/B/O	NT_005375	AC007318	65308154	3	RH18462	2	203.65					1	AC007318
S/G/Y/R/B/O	NT_005375	AC084278	65310073	3
S/G/Y/R/B/O	NT_005375	AC007386	65315954	3	RH16745	2	202.76					1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65321902	3	RH66231	2	204.34					1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65366596	3	RH56151	2	201.61			2	272.20	1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65366653	3	RH16636	2	203.65					1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65366680	3	RH10222	2	203.65					1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65367589	3	RH8032			2	2527.00			1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65368967	3	RH11449	2	202.76	2	2535.00			1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65369075	3	RH69014	2	203.29					1	AC007386
S/G/Y/R/B/O	NT_005375	AC007386	65369285	3	RH70537	2	201.61					1	AC007386
S/G/Y/R/B/O	NT_005375	AC007880	65591782	3	WI-5675					2	272.40	1	AC007880, AC036192
S/G/Y/R/B/O	NT_005375	AC007365	65617670	3	WI-3589					2	278.10	1	AC007365, AC036192
S/G/Y/R/B/O	NT_005375	AC007365	65758430	3	RH56965	2	202.76			2	268.60	1	AC007365
S/G/Y/R/B/O	NT_005375	AC007365	65773160	3	AFMA346YB5					2	269.10	1	AC007365
S/G/Y/R/B/O	NT_005375	AC007365	65788185	3	RH48491	2	194.39					1
S/G/Y/R/B/O	NT_005375	AC008074	65797592	3	RH26401	2	194.29					1	AC008074
S/G/Y/R/B/O	NT_005375	AC008074	65837285	3	RH25178	2	202.66					1	AC008074
S/G/Y/R/B/O	NT_005375	AC008074	65870405	3	RH92213	2	202.61					1	AC008074
S/G/Y/R/B/O	NT_005375	AC008074	65929079	3	RH11927	2	200.18					1	AC008074
S/G/Y/R/B/O	NT_005375	AC008074	65931222	3	RH38218			2	2539.00			1	AC008074
S/G/Y/R/B/O	NT_005375	AC008074	65931815	3	RH80132	2	233.22					1	AC008074
S/G/Y/R/B/O	NT_005375	AC008074	65938409	3	RH1292			2	2530.00			1	AC008074
S/G/Y/R/B/O	NT_005375	AC114752	65992804	1
S/G/Y/R/B/O	NT_005375	AC009832	66010390	1
S/G/Y/R/B/O	NT_005375	AC093108	66019892	3
S/G/Y/R/B/O	NT_005375	AC092669	66187089	3	RH4740	2	207.91			2	273.00	1	AC092669
S/G/Y/R/B/O	NT_005375	AC092669	66203123	3	RH42219	2	204.23			2	274.00	1	AC092669
S/G/Y/R/B/O	NT_005375	AC092669	66203123	3	RH29968			2	2828.00			1	AC092669

NT_005375 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005375	AC093641	66243092	3
S/G/Y/R/B/O	NT_005375	AC007392	66302789	3	RH56576	2	209.11			2	276.20	1		AC007392
S/G/Y/R/B/O	NT_005375	AC007392	66319587	3	RH68793	2	203.13					1		AC007392
S/G/Y/R/B/O	NT_005375	AC007392	66320726	3	RH56833	2	207.41			2	274.10	1		AC007392
S/G/Y/R/B/O	NT_005375	AC007392	66328201	3	D2S166					2	278.10	1		AC007392
S/G/Y/R/B/O	NT_005375	AC009474	66512925	3	CHLC.GATA84C10					2	278.10	1		AC009474
S/G/Y/R/B/O	NT_005375	AC009474	66539619	3	D2S379					2	278.70	1		AC009474
S/G/Y/R/B/O	NT_005375	AC009474	66571127	3	CHLC.GATA66D01					2	279.20	1		AC009474
S/G/Y/R/B/O	NT_005375	AC007403	66662823	3	RH31617			2	2772.00			1		AC007403
S/G/Y/R/B/O	NT_005375	AC078941	66827396	3	RH93041	2	211.38					1		AC019040, AC078941
S/G/Y/R/B/O	NT_005375	AC078941	66867590	3	RH4857	2	211.54			2	279.40	1		AC019040, AC078941
S/G/Y/R/B/O	NT_005375	AC023115	66985689	3
S/G/Y/R/B/O	NT_005375	AC023668	67157123	3	RH46083	2	211.54					1		AC023668, AP002005
S/G/Y/R/B/O	NT_005375	AC092571	67250388	3
S/G/Y/R/B/O	NT_005375	AC007422	67356070	3	RH31619			2	2748.00			1		AC007422
S/G/Y/R/B/O	NT_005375	AC010987	67405292	3
S/G/Y/R/B/O	NT_005375	AC093751	67596611	3
S/G/Y/R/B/O	NT_005375	AC079112	67759023	3	CHLC.GATA72A05					2	283.10	1		AC079112
S/G/Y/R/B/O	NT_005375	AC079112	67759041	3	CHLC.GATA8F03.505					2	283.10	1		AC079112
S/G/Y/R/B/O	NT_005375	AC079112	67794897	3	RH69396	2	217.46					1		AC079112
S/G/Y/R/B/O	NT_005375	AC017083	67840181	3	AFMA312YF5					2	283.10	1		AC017083
S/G/Y/R/B/O	NT_005375	AC017083	67876960	3	RH56171	2	213.34			2	278.30	1		AC017083
S/G/Y/R/B/O	NT_005375	AC017083	67881313	3	RH68554	2	213.31					1		AC017083
S/G/Y/R/B/O	NT_005375	AC017083	67922729	3	RH57152	2	213.13			2	283.10	2	AC068618, AC087283,	AC017083, AC068618, AC087283
S/G/Y/R/B/O	NT_005375	AC017083	67923120	3	RH7895			2	2724.00			1		AC017083
S/G/Y/R/B/O	NT_005375	AC017083	67925877	3	RH12230	2	213.13					1		AC017083
S/G/Y/R/B/O	NT_005375	AC017083	67927084	3	RH17689	2	212.52					1		AC017083
S/G/Y/R/B/O	NT_005375	AC017083	67978551	3	RH57049	2	213.34	2	2703.00	2	278.30	1		AC017083
S/G/Y/R/B/O	NT_005375	AC015969	68031336	3	RH56689	2	213.13			2	279.60	1		AC015969
S/G/Y/R/B/O	NT_005375	AC015969	68040236	3	RH10054	2	217.97					1		AC015969
S/G/Y/R/B/O	NT_005375	AC015969	68054112	3	RH18495	2	213.13					1		AC015969
S/G/Y/R/B/O	NT_005375	AC015969	68142974	3	RH56825	2	213.23			2	278.30	1		AC015969
S/G/Y/R/B/O	NT_005375	AC015969	68144334	3	RH11485	2	212.93					1		AC015969
S/G/Y/R/B/O	NT_005375	AC018462	68194489	3	RH79649	2	194.19					1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68252335	3	RH56830	2	193.67			2	259.70	1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68253699	3	RH56379	2	193.88	2	2461.00			1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68253699	3	SGC34371					2	259.70	1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68253748	3	RH68385	2	194.19					1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68255340	3	RH48970	2	192.26					1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68262217	3	RH56441	2	189.82	2	2454.00	2	257.90	1		AC018462
S/G/Y/R/B/O	NT_005375	AC018462	68303537	3	RH56968	2	189.82			2	258.30	1		AC018462
S/G/Y/R/B/O	NT_005375	AC093401	68340169	3	WI-17834					2	261.40	1		AC093401
S/G/Y/R/B/O	NT_005375	AC093401	68340169	3	RH56693	2	192.26					1		AC093401
S/G/Y/R/B/O	NT_005375	AC093401	68340965	3	RH66963	2	194.50					1		AC093401
S/G/Y/R/B/O	NT_005375	AC093401	68341058	3	RH45152	2	189.92					1		AC093401
S/G/Y/R/B/O	NT_005375	AC093159	68569959	3	RH46121	2	196.23					1		AC093159
S/G/Y/R/B/O	NT_005375	AC093159	68594631	3	RH26859	2	192.57					1	AC107083,	AC093159, AC107083
S/G/Y/R/B/O	NT_005375	AC107083	68607614	1
S/G/Y/R/B/O	NT_005375	AC073966	68645594	1
S/G/Y/R/B/O	NT_005375	AC092155	68665434	3	RH70013	2	196.23					2	AC073966, AC107083,	AC023942, AC073966, AC092155, AC107083

NT_005375 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005375	AC092567	68897425	3	WI-16387					2	262.50	1		AC092567
S/G/Y/R/B/O	NT_005375	AC092567	68897425	3	RH56814	2	192.26					1		AC092567
S/G/Y/R/B/O	NT_005375	AC092567	68960785	3	RH31614			2	2482.00			1		AC092567
S/G/Y/R/B/O	NT_005375	AC092567	68976620	3	RH68604	2	195.40					1		AC092567
S/G/Y/R/B/O	NT_005375	AC007098	68995492	3	RH69312	2	196.23					1		AX030068
S/G/Y/R/B/O	NT_005375	AC007098	69023230	3	WI-6130					2	262.50	1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69027088	3	RH2115			2	2482.00			1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69027228	3	RH16820	2	196.23					1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69032319	3	RH92658	2	196.23					1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69039555	3	RH65596	2	192.26					1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69041150	3	RH47091	2	192.46					1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69084782	3	RH68485	2	192.33					1		AC007098, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69084801	3	RH67732	2	196.23					1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69087168	3	RH66030	2	192.33					1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC007098	69104759	3	RH42818			2	2495.00			1		AC007098, AC007629, AC079838
S/G/Y/R/B/O	NT_005375	AC009501	69135742	3	RH79581	2	187.91					1		AC009501, AC079838
S/G/Y/R/B/O	NT_005375	AC009501	69176205	3	RH102105	2	192.26					1		AC009501, AX030062, AX030063, AX030068
S/G/Y/R/B/O	NT_005375	AC009501	69176973	3	RH68300	2	196.23					1		AC009501, AX030062, AX030063, AX030066, AX030068
S/G/Y/R/B/O	NT_005375	AC009501	69252692	3	RH12136	2	192.26					1		AC009501
S/G/Y/R/B/O	NT_005375	AC074367	69299126	3	RH36254	2	194.45					1		AC074367
S/G/Y/R/B/O	NT_005375	AC067953	69391698	3
S/G/Y/R/B/O	NT_005375	AC079353	69570854	3	WI-3580					2	263.00	1	AC079381,	AC079353, AC079381
S/G/Y/R/B/O	NT_005375	AC016734	69729387	3	RH16368	2	198.25					1		AC016734
S/G/Y/R/B/O	NT_005375	AC016734	69729417	3	RH12351	2	202.66					1		AC016734
S/G/Y/R/B/O	NT_005375	AC016734	69737747	3	RH56252	2	194.04	2	2508.00	2	266.00	1		AC016734
S/G/Y/R/B/O	NT_005375	AC096664	69847958	3	RH56369	2	194.09			2	266.80	3	AC020904,	AC020904, AC025749
S/G/Y/R/B/O	NT_005375	AC096664	69894531	3	RH98668	2	194.14					1	AC114748,	AC096664, AC114748
S/G/Y/R/B/O	NT_005375	AC114748	69934702	1	RH56369	2	194.09			2	266.80	3	AC020904,	AC020904, AC025749
S/G/Y/R/B/O	NT_005375	AC114748	69998818	1	RH104166	2	194.14					1		AC114748
S/G/Y/R/B/O	NT_005375	AC114748	70004537	1	RH45595	2	198.15					1
S/G/Y/R/B/O	NT_005375	AC013466	69991949	1
S/G/Y/R/B/O	NT_005375	AC092588	70011144	3	RH56623	2	198.15	2	2548.00	2	266.40	1	AC114748,	AC092588, AC114748
S/G/Y/R/B/O	NT_005375	AC092588	70011213	3	RH17184	2	198.15					1	AC114748,	AC092588, AC114748
S/G/Y/R/B/O	NT_005375	AC092588	70011838	3	RH10268	2	198.15					1	AC114748,	AC092588, AC114748
S/G/Y/R/B/O	NT_005375	AC092588	70012222	3	RH46124	2	202.66					1	AC114748,	AC092588, AC114748
S/G/Y/R/B/O	NT_005375	AC092588	70013183	3	RH93801	2	194.14					1	AC114748,	AC092588, AC114748
S/G/Y/R/B/O	NT_005375	AC092588	70057797	3	RH13342	2	198.15	2	2523.00			1	AC013466,	AC013466, AC092588
S/G/Y/R/B/O	NT_005375	AC012368	70212833	3	RH10649	2	202.66					1	AC013466,	AC012368, AC013466
S/G/Y/R/B/O	NT_005375	AC012368	70212875	3	RH10011	2	200.18					1	AC013466,	AC012368, AC013466
S/G/Y/R/B/O	NT_005375	AC012368	70213213	3	RH68669	2	200.18					1	AC013466,	AC012368, AC013466
S/G/Y/R/B/O	NT_005375	AC012368	70214074	3	RH12405	2	200.18					1	AC013466,	AC012368, AC013466
S/G/Y/R/B/O	NT_005375	AC012368	70327577	3	RH45553	2	199.56					1		AC012368
S/G/Y/R/B/O	NT_005375	AC074289	70341997	3
S/G/Y/R/B/O	NT_005375	AC079381	70504633	1
S/G/Y/R/B/O	NT_005375		-		RH12683	2	194.39					0
S/G/Y/R/B/O	NT_005375		-		RH32213			2	2695.00			1	AC114772,	AC114772
S/G/Y/R/B/O	NT_005375		-		RH36094	2	204.44					0
S/G/Y/R/B/O	NT_005375		-		RH32899			2	2710.00			1	AC114802,	AC114802
S/G/Y/R/B/O	NT_005375		-		RH70369	2	194.50					0
S/G/Y/R/B/O	NT_005375		-		RH33473			2	2684.00			1	AC114802,	AC114802

NT_005375 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005375	-	RH80326	2	212.72			1	AC009970,	AC009970, AC040935
S/G/Y/R/B/O	NT_005375	-	RH37830			2	2703.00	1	AC105054,	AC105054
S/G/Y/R/B/O	NT_005375	-	RH92860	2	203.65			0
S/G/Y/R/B/O	NT_005375	-	RH434			2	2703.00	1	AC105054,	AC105054