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  Chromosome X - RH Maps - Single Contig
 

Chromosome X - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_028427 NT_028413 NT_033330 NT_025302 NT_011735 NT_029505 NT_030875 NT_011649
NT_025291 NT_030874 NT_030885 NT_011812 NT_011832 NT_030887 NT_011775 NT_011772
NT_033338 NT_025352 NT_011724 NT_011586 NT_011754 NT_027220 NT_011694 NT_011662
NT_011530 NT_025960 NT_030890 NT_011535 NT_011536 NT_030191 NT_011753 NT_011766
NT_025940 NT_030873 NT_025323 NT_025318 NT_030889 NT_011752 NT_011757 NT_011657
NT_011793 NT_011692 NT_025348 NT_011568 NT_033332 NT_033319 NT_011611 NT_011638
NT_033329 NT_027215 NT_025961 NT_011836 NT_011799 NT_011618 NT_028400 NT_025297
NT_011630 NT_029503 NT_011669 NT_029502 NT_019696 NT_033336 NT_033321 NT_011594
NT_025273 NT_033334 NT_031924 NT_011544 NT_011597 NT_011689 NT_025320 NT_025329
NT_025376 NT_025312 NT_025306 NT_011687 NT_025949 NT_033327 NT_025330 NT_027217
NT_033328 NT_011651 NT_027218 NT_011765 NT_025280 NT_025319 NT_025299 NT_011819
NT_011783 NT_033326 NT_011565 NT_025265 NT_028405 NT_028406 NT_011588 NT_011667
NT_011613 NT_011786 NT_025267 NT_011834 NT_011719 NT_028403 NT_029504 NT_011574
NT_026503 NT_011681 NT_011851 NT_011537 NT_019686 NT_026504 NT_025309 NT_011602
NT_033323 NT_033335 NT_033325 NT_033322 NT_011598 NT_011726 NT_029507 NT_033333
NT_011637 NT_025345 NT_033324 NT_025965 NT_025307


  NT_011689
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011689AC023178765975141          
S/G/Y/R/B/O NT_011689AP002447766100961          
S/G/Y/R/B/O NT_011689Z98754766180293          
S/G/Y/R/B/O NT_011689AL591421767486233          
S/G/Y/R/B/O NT_011689AL645817767969443          
S/G/Y/R/B/O NT_011689AL157933769241933          
S/G/Y/R/B/O NT_011689AL049642769728613          
S/G/Y/R/B/O NT_011689AL009047771296543RH32972  91557.00  3AL353795, AP000924, AP002788, AC015806, AL009047, AL035452, AL353795, AL391668, AP000924, AP002788
S/G/Y/R/B/O NT_011689AL031313773483373RH1080315152.94    2AC009821, AC009821, AL031313
S/G/Y/R/B/O NT_011689AL109931774113573          
S/G/Y/R/B/O NT_011689AL022574774931083          
S/G/Y/R/B/O NT_011689AL109621776699623RH103868X255.79    1 AL109621
S/G/Y/R/B/O NT_011689AL008987777209863RH63316X253.01  X227.301AC023857, AL078477, AC023857, AL078477, AL138811
S/G/Y/R/B/O NT_011689AL139394778215683          
S/G/Y/R/B/O NT_011689AL022308778853073          
S/G/Y/R/B/O NT_011689AL021706779598463          
S/G/Y/R/B/O NT_011689AL160266780558203          
S/G/Y/R/B/O NT_011689AL359972781879443          
S/G/Y/R/B/O NT_011689Z82170783342343RH63341X259.09X2373.00X222.701 Z82170
S/G/Y/R/B/O NT_011689Z82170783343343RH47367X258.48    1 Z82170
S/G/Y/R/B/O NT_011689Z82170783472683RH7572X260.91  X223.901 Z82170
S/G/Y/R/B/O NT_011689Z82170783472683RH33859  X2373.00  1 Z82170
S/G/Y/R/B/O NT_011689Z82170783547603RH91671X271.60    1  
S/G/Y/R/B/O NT_011689AL121882784050783RH79841X251.66    1 AL121882
S/G/Y/R/B/O NT_011689AL591396784814123          
S/G/Y/R/B/O NT_011689AL445306785937683RH626278375.77  8461.904AC022893, AL137013, AL163204, AL359737, AC022893, AL050303, AL137013, AL163204, AL359737
S/G/Y/R/B/O NT_011689AL158143786587773          
S/G/Y/R/B/O NT_011689AL627233786857403          
S/G/Y/R/B/O NT_011689AL354653789055963SGC35226    X220.401 AL354653
S/G/Y/R/B/O NT_011689AL354653789055963RH63520X272.75    1 AL354653
S/G/Y/R/B/O NT_011689AL354653789055963RH68814X256.94    1 AL354653
S/G/Y/R/B/O NT_011689AL354653789067283RH94074X257.54    1 AL354653
S/G/Y/R/B/O NT_011689AL354653789092603RH38710X257.54    1 AL354653
S/G/Y/R/B/O NT_011689AL603626789310233          
S/G/Y/R/B/O NT_011689AL389887789367123          
S/G/Y/R/B/O NT_011689AL035552790807313WI-4189    X220.801 AL035552
S/G/Y/R/B/O NT_011689AL035552791961233CHLC.GATA43B11    X222.101 AL035552
S/G/Y/R/B/O NT_011689AL450471792275633          
S/G/Y/R/B/O NT_011689AL022160792776543          
S/G/Y/R/B/O NT_011689AL121867794120283          
S/G/Y/R/B/O NT_011689Z95126795431663          
S/G/Y/R/B/O NT_011689AL593849797161393          
S/G/Y/R/B/O NT_011689AL590228797318553          
S/G/Y/R/B/O NT_011689Z83820799328103RH63291X256.50X2408.00X226.401Z99571, Z83820, Z99571
S/G/Y/R/B/O NT_011689Z83820799373743RH25997X257.86    1Z99571, Z83820, Z99571
S/G/Y/R/B/O NT_011689Z99571799382933RH63563X258.69  X222.701 Z99571
S/G/Y/R/B/O NT_011689Z99571799383033RH9973X257.54    1 Z99571
S/G/Y/R/B/O NT_011689AC003001800593843RH25659X257.54    1 AC003001
S/G/Y/R/B/O NT_011689AC003001800594773RH12509X257.54    1 AC003001
S/G/Y/R/B/O NT_011689AC003001801182863RH5528717307.04  17339.201Z82216, AC003001, Z82216


  NT_011689 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011689AC003001801182983RH63416X257.54  X227.301Z82216, AC003001, Z82216
S/G/Y/R/B/O NT_011689AC003001801183243RH10433X256.94    1Z82216, AC003001, Z82216
S/G/Y/R/B/O NT_011689Z82216802211403WI-4921    X227.301 Z82216
S/G/Y/R/B/O NT_011689AL117325802229113          
S/G/Y/R/B/O NT_011689AL592427803064843          
S/G/Y/R/B/O NT_011689AL627407804451753          
S/G/Y/R/B/O NT_011689AL022401807065813RH35740X258.18    1 AL022401
S/G/Y/R/B/O NT_011689AL022401807066263RH63338X253.64  X227.701 AL022401
S/G/Y/R/B/O NT_011689AL022401807097493RH38739X257.54    1 AL022401
S/G/Y/R/B/O NT_011689AL009175807837983RH46170X257.76    1 AL009175
S/G/Y/R/B/O NT_011689AL138748808650703          
S/G/Y/R/B/O NT_011689AL035451808721763          
S/G/Y/R/B/O NT_011689AL109752809871153          
S/G/Y/R/B/O NT_011689AL591465810665773          
S/G/Y/R/B/O NT_011689Z95124811172713RH7673X254.09  X228.201AC040957, AC040957, Z95124
S/G/Y/R/B/O NT_011689Z95124811173253RH29134  X2437.00  1AC040957, AC040957, Z95124
S/G/Y/R/B/O NT_011689Z95325811856833          
S/G/Y/R/B/O NT_011689AL157381812984103          
S/G/Y/R/B/O NT_011689AL023095813219123          
S/G/Y/R/B/O NT_011689AL138747814344153          
S/G/Y/R/B/O NT_011689AL034406815247143RH31530  X2454.00  1 AL034406
S/G/Y/R/B/O NT_011689AL390058816471143RH104073X256.72    1 AL390058
S/G/Y/R/B/O NT_011689AL390058816775223RH93234X256.72    1 AC079805, AL390058
S/G/Y/R/B/O NT_011689Z82210817892283WI-5632    X219.101 AC079805, Z82210
S/G/Y/R/B/O NT_011689AL049175818498583          
S/G/Y/R/B/O NT_011689AL627165818897913          
S/G/Y/R/B/O NT_011689AL590229819533263WI-3779    X219.101 AL590229
S/G/Y/R/B/O NT_011689AL590229819942043RH28285X252.44    1 AL590229
S/G/Y/R/B/O NT_011689AL590229820213783CHLC.GATA45H11    X226.501 AL590229
S/G/Y/R/B/O NT_011689AL590236820722853          
S/G/Y/R/B/O NT_011689AL132820821496723          
S/G/Y/R/B/O NT_011689Z96811822397393AFM225YB6    X228.401 Z96811
S/G/Y/R/B/O NT_011689AL121822822994753          
S/G/Y/R/B/O NT_011689Z95400823123123          
S/G/Y/R/B/O NT_011689AL035424824453353          
S/G/Y/R/B/O NT_011689AL121884825148963RH63467X264.48  X230.701 AL121884
S/G/Y/R/B/O NT_011689Z83818825820713RH15279X264.48  X228.101 Z83818
S/G/Y/R/B/O NT_011689Z83818825820713RH29866  X2500.00  1 Z83818
S/G/Y/R/B/O NT_011689AL136363826000873          
S/G/Y/R/B/O NT_011689AL030999826932833          
S/G/Y/R/B/O NT_011689AL591422827798013          
S/G/Y/R/B/O NT_011689AL035246827859883          
S/G/Y/R/B/O NT_011689AL024493829889023AFMA060YD1    X228.101 AL024493
S/G/Y/R/B/O NT_011689AL024493830134893RH7669X264.58  X228.401 AL024493
S/G/Y/R/B/O NT_011689AL606532830167533          
S/G/Y/R/B/O NT_011689AC083882831135491          
S/G/Y/R/B/O NT_011689AC040957831406641          
S/G/Y/R/B/O NT_011689AC022986832253411          
S/G/Y/R/B/O NT_011689 - AFM329XH5    X222.001 AL691517
S/G/Y/R/B/O NT_011689 - WI-12682    X226.601AL357115, AL357115, AL512502


  NT_011689 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011689 - SGC34549    X227.101AC015662, AC019087, AL357115, AC015662, AC019087, AL357115, AL512502
S/G/Y/R/B/O NT_011689 - WI-20792    X227.501AC015662, AC019087, AL357115, AC015662, AC019087, AL357115, AL512502