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  Chromosome 13 - RH Maps - Single Contig
 

Chromosome 13 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009799 NT_033260 NT_033997 NT_009984 NT_009910 NT_033922 NT_033259 NT_024524
NT_028344 NT_009866 NT_009952 NT_027140 NT_024498


  NT_009799
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009799AC079311170000011          
S/G/Y/R/B/O NT_009799AC079738170078981RH248171336.74    2AL161715, AC079738, AL161715, AL359456
S/G/Y/R/B/O NT_009799AL138715170465023          
S/G/Y/R/B/O NT_009799AL359737172076853          
S/G/Y/R/B/O NT_009799AL391382174357212RH3653618119.45    2AC027800, AP001004, AC027800, AP001004
S/G/Y/R/B/O NT_009799AL355516174834503          
S/G/Y/R/B/O NT_009799AL137001175772753          
S/G/Y/R/B/O NT_009799AL139327177510713RH1044352225.66    2AC004033, AC007050, AC004033, AC007050, AC021384, AL139327, AL162715, AL358856, AL590046
S/G/Y/R/B/O NT_009799AL356259179840443RH78287X350.52    3AC019099, AF274858, AC019099, AC084868, AF274858, AL356259, AL450318, AL590046
S/G/Y/R/B/O NT_009799AL356259180084113RH1397  13126.00  4AC018739, AC073022, AL354798, AL359763, AC013721, AC018739, AC021813, AC073022, AL354798, AL356259, AL359763, AL450318, AL590046
S/G/Y/R/B/O NT_009799AL590076180188293          
S/G/Y/R/B/O NT_009799AL359457181693403RH5325913130.08  13120.703AL161614, AL161614
S/G/Y/R/B/O NT_009799AL354808182671213RH103936131.94    1 AC021256, AL354808
S/G/Y/R/B/O NT_009799AL354808182679043RH396071332.28    1 AC021256, AL354808
S/G/Y/R/B/O NT_009799AL354808182691123RH396461331.46    1 AC021256, AL354808
S/G/Y/R/B/O NT_009799AL354808182738843RH104801327.75    1 AC021256, AL354808
S/G/Y/R/B/O NT_009799AL354808182738903RH66674130.00    1 AC021256, AL354808
S/G/Y/R/B/O NT_009799AL354808182761343RH1023971339.70    1 AC021256, AL354808
S/G/Y/R/B/O NT_009799AL354808182987313RH369321325.58    1 AL354808
S/G/Y/R/B/O NT_009799AL354808183585183RH1218320209.67    2AL109614, AL109614, AL354808
S/G/Y/R/B/O NT_009799AL355001184350413          
S/G/Y/R/B/O NT_009799AL591925185154153          
S/G/Y/R/B/O NT_009799AL137119185885743RH456331330.12    1 AL137119
S/G/Y/R/B/O NT_009799AL137119186229003RH396231335.53    1 AL137119
S/G/Y/R/B/O NT_009799AL137119186374853RH984421334.73    1 AL137119
S/G/Y/R/B/O NT_009799AL137119186443323RH1311  1315.00  1 AL137119
S/G/Y/R/B/O NT_009799AL137119186707243RH471321336.94    1 AL137119
S/G/Y/R/B/O NT_009799AL138688186820353RH1028111334.53    1 AL138688
S/G/Y/R/B/O NT_009799AL138688186840433RH448881337.75    1 AL138688
S/G/Y/R/B/O NT_009799AL138688186867593RH471511318.48    1 AL138688
S/G/Y/R/B/O NT_009799AL138688186869973RH714161334.73    1 AL138688
S/G/Y/R/B/O NT_009799AL138688186876593RH1037201338.57    1 AL138688
S/G/Y/R/B/O NT_009799AL138688186882383RH461191325.69    1 AL138688
S/G/Y/R/B/O NT_009799AL138688187085883RH154931314.50    1 AL138688
S/G/Y/R/B/O NT_009799AL138688187823883RH1039881338.57    1 AL138688
S/G/Y/R/B/O NT_009799AL355984188748793RH153281335.33    1 AL355984
S/G/Y/R/B/O NT_009799AL161715190314013RH248171336.74    2AC079738, AC079738, AL161715, AL359456
S/G/Y/R/B/O NT_009799AL606822190494153          
S/G/Y/R/B/O NT_009799AL590096190722433          
S/G/Y/R/B/O NT_009799AL161772192433573RH657211344.53    1 AC018392, AL161772
S/G/Y/R/B/O NT_009799AL161772192917203RH396781341.28    1 AC018392, AL161772
S/G/Y/R/B/O NT_009799AL512652193234983RH1019721345.76    1 AC018392, AL512652
S/G/Y/R/B/O NT_009799AL512652193297163RH781881344.53    1 AC018392, AL512652
S/G/Y/R/B/O NT_009799AL512652193695133RH214411346.53    1 AL512652
S/G/Y/R/B/O NT_009799AL512652193795973RH1031751345.98    1 AL512652
S/G/Y/R/B/O NT_009799AL512652193798543RH915371346.53    1 AL512652
S/G/Y/R/B/O NT_009799AL512652193798693RH168681343.81    1 AL512652
S/G/Y/R/B/O NT_009799AL356285194489423RH680881342.15    1 AC015834, AL138817, AL356285
S/G/Y/R/B/O NT_009799AL161613196284023          
S/G/Y/R/B/O NT_009799AL158032197479033WI-8572    137.501 AL158032


  NT_009799 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009799AL158032197485943RH53195130.92  130.001 AL158032
S/G/Y/R/B/O NT_009799AL158032197487233RH396211345.31    1 AL158032
S/G/Y/R/B/O NT_009799AL158032197653943RH935821344.53    1 AL158032
S/G/Y/R/B/O NT_009799AL158032197778043RH751941346.53    1 AL158032
S/G/Y/R/B/O NT_009799AL158032197778093RH396691346.75    1 AL158032
S/G/Y/R/B/O NT_009799AL158032198631703RH4770715175.00    3AC025043, AL359377, AC021404, AC025043, AC026868, AC087527, AL158032, AL355600, AL359377
S/G/Y/R/B/O NT_009799AL139380199097783          
S/G/Y/R/B/O NT_009799AL136219199732993RH442001346.42    2 AL136219
S/G/Y/R/B/O NT_009799AL136219200060123RH9391913285.83    2AL161771, AC009687, AC011177, AL161771, U67674
S/G/Y/R/B/O NT_009799AL136219200511393RH1038751344.86    1 AL136219, AL390064
S/G/Y/R/B/O NT_009799AL136219201164383RH941931346.75    1 AL136219
S/G/Y/R/B/O NT_009799AL136219201212143RH38003  130.00  1 AL136219
S/G/Y/R/B/O NT_009799AL138680201232053          
S/G/Y/R/B/O NT_009799AL139378202204383RH201681346.96    1 AC016208, AL139378
S/G/Y/R/B/O NT_009799AL139378202205033RH662551346.75    1 AC016208, AL139378
S/G/Y/R/B/O NT_009799AL139378203023703RH757851347.91    1 AL139378, AL157876
S/G/Y/R/B/O NT_009799AL139378203024143RH396091348.89    1 AL139378, AL157876
S/G/Y/R/B/O NT_009799AL139378203024773RH783321348.89    1 AL139378, AL157876
S/G/Y/R/B/O NT_009799AL139378203030083RH489431351.42    1 AL139378, AL157876
S/G/Y/R/B/O NT_009799AL139034203848013          
S/G/Y/R/B/O NT_009799AL137250205343883WI-4510    1319.901 AL137250, AL646100
S/G/Y/R/B/O NT_009799AL672223206423313          
S/G/Y/R/B/O NT_009799AL136962206586653          
S/G/Y/R/B/O NT_009799AL590804208223203          
S/G/Y/R/B/O NT_009799AL137248208230793          
S/G/Y/R/B/O NT_009799AL591963210093223          
S/G/Y/R/B/O NT_009799AL512484210750193          
S/G/Y/R/B/O NT_009799AL354828211974813          
S/G/Y/R/B/O NT_009799AL162853213654953          
S/G/Y/R/B/O NT_009799AL157931215074063RH985761351.93    1  
S/G/Y/R/B/O NT_009799AL356287216361692          
S/G/Y/R/B/O NT_009799AL160256219140713WI-5125    1354.301 AC079761, AL160256
S/G/Y/R/B/O NT_009799AL157766219251753RH532581357.32  1353.901 AL157766
S/G/Y/R/B/O NT_009799AL157766219253443RH396791350.27    1 AL157766
S/G/Y/R/B/O NT_009799AL157766219294693RH532011355.39  1354.001 AC079761, AL157766
S/G/Y/R/B/O NT_009799AL157766219295573RH457631357.20    1 AC079761, AF193556, AL157766
S/G/Y/R/B/O NT_009799AL157766219307603RH38004  1338.00  1 AF193556, AL157766
S/G/Y/R/B/O NT_009799AL157766219310413RH790031357.09    1 AF193556, AL157766
S/G/Y/R/B/O NT_009799AL354815220871963RH1029481357.09    1 AL354815
S/G/Y/R/B/O NT_009799AL161422222115563RH491091355.39    1 AL161422
S/G/Y/R/B/O NT_009799AL161422222762833RH460921359.17    1 AL161422
S/G/Y/R/B/O NT_009799AL139080224072193CHLC.GATA23C03    1353.701 AL139080
S/G/Y/R/B/O NT_009799AL157368224096703          
S/G/Y/R/B/O NT_009799AL445985224923623RH1021381359.76    1AL359736, AL359736, AL445985
S/G/Y/R/B/O NT_009799AL139324226121383          
S/G/Y/R/B/O NT_009799AL136963227262693          
S/G/Y/R/B/O NT_009799AL359736228454663RH701411351.10    1 AL359736
S/G/Y/R/B/O NT_009799AL359736229028623RH673381374.49    1 AL359736
S/G/Y/R/B/O NT_009799AL359736229074323RH101531373.97    1 AL359736
S/G/Y/R/B/O NT_009799AL359763230217513RH1397  13126.00  4AC018739, AC073022, AL354798, AL356259, AC013721, AC018739, AC021813, AC073022, AL354798, AL356259, AL359763, AL450318, AL590046


  NT_009799 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009799AL359763230234903RH685571375.43    1 AC013721, AC021813, AL359763
S/G/Y/R/B/O NT_009799AL359763230320723RH677451360.17    1 AC013721, AC021813, AL359763
S/G/Y/R/B/O NT_009799AL359763230320803RH449201374.49    1 AC013721, AC021813, AL359763
S/G/Y/R/B/O NT_009799AL359763230515493RH534111350.27  1354.301 AC013721, AC021813, AL359763
S/G/Y/R/B/O NT_009799AL359763231029533RH445821373.97    1 AC013721, AC021813, AL359763
S/G/Y/R/B/O NT_009799AL359763231030813RH396201373.97    1 AC013721, AC021813, AL359763
S/G/Y/R/B/O NT_009799AL359538232142293RH396521370.24    1 AL359538
S/G/Y/R/B/O NT_009799AL157364233121583RH9081  13115.00  1 AC016688, AL157364
S/G/Y/R/B/O NT_009799AL391560233227483          
S/G/Y/R/B/O NT_009799AL354798234777471RH986381371.36    2AC018739, AC073022, AC018739, AC073022, AL354798
S/G/Y/R/B/O NT_009799AL354798234838031RH923711368.11    2AC018739, AC018739, AL354798
S/G/Y/R/B/O NT_009799AL354798235293921RH1032701371.56    2AC018739, AC073022, AC018739, AC073022, AC073353, AL354798
S/G/Y/R/B/O NT_009799AL354798235372401RH1397  13126.00  4AC018739, AC073022, AL356259, AL359763, AC013721, AC018739, AC021813, AC073022, AL354798, AL356259, AL359763, AL450318, AL590046
S/G/Y/R/B/O NT_009799AL354798235375321RH533511371.56  1354.202AC018739, AC073022, AC018739, AC073022, AL354798
S/G/Y/R/B/O NT_009799AL590099236265893RH766831368.63    2AL359757, AL359757, AL590099
S/G/Y/R/B/O NT_009799AL590099236272753RH531701365.59  1344.601 AL590099
S/G/Y/R/B/O NT_009799AL590099236272753RH33798  1395.00  1 AL590099
S/G/Y/R/B/O NT_009799AL590099236297053RH533551368.63  1354.502AL359757, AL359757, AL590099
S/G/Y/R/B/O NT_009799AL359757237623102RH533551368.63  1354.502AL590099, AL359757, AL590099
S/G/Y/R/B/O NT_009799AL359757237655682RH766831368.63    2AL590099, AL359757, AL590099
S/G/Y/R/B/O NT_009799AL359757237692162RH444241369.65    1 AL359757
S/G/Y/R/B/O NT_009799AL359757237697992RH396261369.65    1 AL359757
S/G/Y/R/B/O NT_009799AL359757237904322RH702741369.65    1 AL359757
S/G/Y/R/B/O NT_009799AL359757237904322RH32593  13140.00  1 AL359757
S/G/Y/R/B/O NT_009799AL359757237905282RH265531368.22    1 AL359757
S/G/Y/R/B/O NT_009799AL590787238468513RH532751368.63  1354.301 AL590787
S/G/Y/R/B/O NT_009799AL590787238469523RH442481368.11    1 AL590787
S/G/Y/R/B/O NT_009799AL590787238480313RH263441368.11    1 AL590787
S/G/Y/R/B/O NT_009799AL646102239379393          
S/G/Y/R/B/O NT_009799AL138958239418963RH675391367.80    1 AL138958
S/G/Y/R/B/O NT_009799AL138958239427383RH37925  13167.00  1 AL138958
S/G/Y/R/B/O NT_009799AL138958239664343RH440691370.26    2AC021222, AP003041, AC021222, AL138958, AP003041
S/G/Y/R/B/O NT_009799AL138958240176913WI-4676    1353.801 AL138958
S/G/Y/R/B/O NT_009799AL356316241009083          
S/G/Y/R/B/O NT_009799AL669971241749093          
S/G/Y/R/B/O NT_009799AL136438243088203RH531931369.25  1353.401 AL136438
S/G/Y/R/B/O NT_009799AL157366244293053          
S/G/Y/R/B/O NT_009799AL138815245033063RH31271  13160.00  1 AL138815
S/G/Y/R/B/O NT_009799AL138815246032463RH153201371.46  1354.501 AL138815
S/G/Y/R/B/O NT_009799AL138815246032463RH638  13194.00  1 AL138815
S/G/Y/R/B/O NT_009799AL139004246246233RH532821368.16  1347.101 AL139004
S/G/Y/R/B/O NT_009799AL139004246252583RH534591373.15  1354.201 AL139004
S/G/Y/R/B/O NT_009799AL139004246255763RH366701373.07    1 AL139004
S/G/Y/R/B/O NT_009799AL138966247328093RH457941369.55    1 AL138966
S/G/Y/R/B/O NT_009799AL138966248134903RH469751376.31    1 AL138736, AL138966
S/G/Y/R/B/O NT_009799AL590108248445933          
S/G/Y/R/B/O NT_009799AL159159249584833RH671011375.64    1 AL159159
S/G/Y/R/B/O NT_009799AL159159250037973RH533801375.64  1352.701 AL159159
S/G/Y/R/B/O NT_009799AL159159250046933RH808741385.47    1 AL159159
S/G/Y/R/B/O NT_009799AL159159250048483RH791731376.36    1 AL159159


  NT_009799 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009799AL353789250325893WI-4493    1335.001 AL353789
S/G/Y/R/B/O NT_009799AL163538251938653          
S/G/Y/R/B/O NT_009799AL159978252868432RH265371376.36    1 AL159978
S/G/Y/R/B/O NT_009799AL159978252883742WI-22261    1348.401 AL159978
S/G/Y/R/B/O NT_009799AL159978252883742RH533831385.99    1 AL159978
S/G/Y/R/B/O NT_009799AL159978252892772RH171271386.61    1 AL159978
S/G/Y/R/B/O NT_009799AL159978252893352RH267851384.01    1 AL159978
S/G/Y/R/B/O NT_009799AL159978253494002RH987051385.26    2AC016610, AC016610, AL138687, AL159978
S/G/Y/R/B/O NT_009799AL159978253571342WI-22121    1352.801 AL159978
S/G/Y/R/B/O NT_009799AL159978253571342RH532961385.26    1 AL159978
S/G/Y/R/B/O NT_009799AL159978253594712RH705781376.05    2AC016610, AC016610, AL159978
S/G/Y/R/B/O NT_009799AL159978253965042RH31272  13230.00  1 AL159978
S/G/Y/R/B/O NT_009799AL160035255449173RH31273  13290.00  1 AL160035
S/G/Y/R/B/O NT_009799AL160035255807293WI-4088    1349.801 AL160035
S/G/Y/R/B/O NT_009799AL590125256284663          
S/G/Y/R/B/O NT_009799AL355473256465543RH1025191384.21    1 AL355473
S/G/Y/R/B/O NT_009799AL355473256668743RH659831376.05    4AC010306, AC024038, AC091980, AL121877, AC010152, AC010306, AC024038, AC091980, AL121877, AL355473
S/G/Y/R/B/O NT_009799AL355473256680553RH270891384.11    3AC010306, AC010362, AC091980, AC010306, AC010362, AC091980, AL355473
S/G/Y/R/B/O NT_009799AL158062256727373RH692911386.51    1 AL158062
S/G/Y/R/B/O NT_009799AL158062257684753RH533341382.57  1354.601 AL158062
S/G/Y/R/B/O NT_009799AL159977257785263RH479071376.05    1 AL159977
S/G/Y/R/B/O NT_009799AL159977258418543RH533991377.57  1354.601 AL159977
S/G/Y/R/B/O NT_009799AL159977258418543RH688041385.05    1 AL159977
S/G/Y/R/B/O NT_009799AL159977258569333RP_L21_1    1354.601 AB061826, AL159977
S/G/Y/R/B/O NT_009799AL159977258569723RH533361382.26  1354.601 AB061826, AL159977
S/G/Y/R/B/O NT_009799AL354799259478233          
S/G/Y/R/B/O NT_009799AL137059260297713RH441251382.26    1 AL137059
S/G/Y/R/B/O NT_009799AL137059260360713RH534061377.09  1351.701 AL137059
S/G/Y/R/B/O NT_009799AL137059260361113RH712101376.05    1 AL137059
S/G/Y/R/B/O NT_009799AL137059260394553RH1042541382.26    1 AL137059
S/G/Y/R/B/O NT_009799AL138699261465373RH74706  13337.00  1 AL138699
S/G/Y/R/B/O NT_009799AL138699261465593RH917371382.26    1 AL138699
S/G/Y/R/B/O NT_009799AL136439262028003RH748361380.43    1 AL136439
S/G/Y/R/B/O NT_009799AL136439262237363RH533821362.44  1351.701 AL136439
S/G/Y/R/B/O NT_009799AL136439262665623RH532371376.98  1351.901 AL136439
S/G/Y/R/B/O NT_009799AL136439262678833RH256841380.43    1 AL136439
S/G/Y/R/B/O NT_009799AL136439262733423RH426901380.3313245.00  1 AL136439
S/G/Y/R/B/O NT_009799AL390738263133893          
S/G/Y/R/B/O NT_009799AL353195265256253RH916611382.26    1 AL353195
S/G/Y/R/B/O NT_009799AL390737265496421RH161462036.60    2AL109618, AL109618, AL390737
S/G/Y/R/B/O NT_009799 - RH1028241324.80    0  
S/G/Y/R/B/O NT_009799 - RH253921374.49    0  
S/G/Y/R/B/O NT_009799 - RH396101382.26    0  
S/G/Y/R/B/O NT_009799 - RH396661375.01    0  
S/G/Y/R/B/O NT_009799 - RH472901378.10    1AL138712, AL138712
S/G/Y/R/B/O NT_009799 - RH532461373.28  1345.000AL138966, AL138966
S/G/Y/R/B/O NT_009799 - RH534001376.05  1346.500AC023320, AC027672, AC079797, AC107055, AL353680, AL355298, AL391903, AL590108, AC016262, AC023320, AC027672, AC079797, AC107055, AL138736, AL353680, AL355298, AL391903, AL590108
S/G/Y/R/B/O NT_009799 - RH788581341.93    0