Chromosome 13 - RH Maps - Single Contig

Chromosome 13 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_009799	NT_033260	NT_033997	NT_009984	NT_009910	NT_033922	NT_033259	NT_024524
NT_028344	NT_009866	NT_009952	NT_027140	NT_024498

NT_009910

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_009910	AL354833	40747849	3	RH45336	13	131.75					1	AL354833
S/G/Y/R/B/O	NT_009910	AL354833	40750692	3	RH93770	13	132.87					1	AL354833
S/G/Y/R/B/O	NT_009910	AL354833	40750738	3	RH37996			13	964.00			1	AL354833
S/G/Y/R/B/O	NT_009910	AL354833	40786955	3	RH15232	13	132.87					1	AL354833
S/G/Y/R/B/O	NT_009910	AL354833	40847562	3	RH65794	13	146.31					1	AL354833
S/G/Y/R/B/O	NT_009910	AL354833	40870728	3	RH64931	13	132.97					1	AL354833
S/G/Y/R/B/O	NT_009910	AL354833	40870755	3	RH26581	13	148.75					1	AL354833
S/G/Y/R/B/O	NT_009910	AL160252	40879813	3
S/G/Y/R/B/O	NT_009910	AL161417	40932283	3	SGC34907					13	128.60	1	AL161417
S/G/Y/R/B/O	NT_009910	AL161417	40932283	3	RH53442	13	131.24	13	959.00			1	AL161417
S/G/Y/R/B/O	NT_009910	AL161417	40932461	3	RH44589	13	134.57					1	AL161417
S/G/Y/R/B/O	NT_009910	AL161417	40999508	3	RH53175	13	132.97			13	128.00	1	AL161417
S/G/Y/R/B/O	NT_009910	AL161417	40999508	3	RH53225	13	135.19			13	128.20	1	AL161417
S/G/Y/R/B/O	NT_009910	AL161417	41033319	3	WI-4560					13	128.00	1	AL161417
S/G/Y/R/B/O	NT_009910	AL163544	41071038	3
S/G/Y/R/B/O	NT_009910	AL442203	41129324	3
S/G/Y/R/B/O	NT_009910	AL157932	41315218	3	RH13880			13	995.00			1	AL157932
S/G/Y/R/B/O	NT_009910	AL157932	41329049	3	RH103765	13	148.75					1	AL157932
S/G/Y/R/B/O	NT_009910	AL139328	41356144	3
S/G/Y/R/B/O	NT_009910	AL136527	41513807	3	RH53206	13	134.57			13	127.80	1	AC018379, AL136527
S/G/Y/R/B/O	NT_009910	AL136527	41522831	3	RH42913			13	1006.00			1	AC018379, AL136527
S/G/Y/R/B/O	NT_009910	AL136527	41536457	3	RH39631	13	147.66					1	AC018379, AL136527
S/G/Y/R/B/O	NT_009910	AL136527	41599301	3	RH92944	13	135.29					1	AC018379, AL136527
S/G/Y/R/B/O	NT_009910	AL136527	41601608	3	RH39622	13	135.19					1	AC018379, AL136527
S/G/Y/R/B/O	NT_009910	AL136527	41603298	3	RH36777	13	148.71					1	AC018379
S/G/Y/R/B/O	NT_009910	AL138703	41649322	3
S/G/Y/R/B/O	NT_009910	AL592523	41779088	3
S/G/Y/R/B/O	NT_009910	AL139382	41878711	3	RH102002	13	132.67					1	AC023297, AL139382
S/G/Y/R/B/O	NT_009910	AL139382	41879265	3	CHLC.GATA6B07					13	117.30	1	AC023297, AL139382
S/G/Y/R/B/O	NT_009910	AL137138	42001127	3	RH104161	13	149.47					1	AL137138
S/G/Y/R/B/O	NT_009910	AL138819	42071493	3	RH75223	13	135.29					1	AL138819
S/G/Y/R/B/O	NT_009910	AL138819	42071536	3	RH44530	13	148.71					1	AL138819
S/G/Y/R/B/O	NT_009910	AL138819	42121381	3	RH92728	13	146.31					1	AL138819
S/G/Y/R/B/O	NT_009910	AL138819	42129930	3	RH67983	13	134.60					1	AL138819
S/G/Y/R/B/O	NT_009910	AL137878	42166652	3	RH99288	13	132.97					1	AL137878
S/G/Y/R/B/O	NT_009910	AL137878	42168138	3	RH14262			13	1022.00			1	AL137878
S/G/Y/R/B/O	NT_009910	AL137878	42208577	3	RH104375	13	146.72					1	AL137878
S/G/Y/R/B/O	NT_009910	AL445217	42243179	3	RH103348	13	130.58					1	AL445217
S/G/Y/R/B/O	NT_009910	AL445217	42248858	3	RH31281			13	1022.00			1	AL445217
S/G/Y/R/B/O	NT_009910	AL445217	42344310	3	RH76430	13	132.67					1	AL445217
S/G/Y/R/B/O	NT_009910	AL445217	42376549	3	WI-10462					13	128.50	1	AC027357, AL445217
S/G/Y/R/B/O	NT_009910	AL445217	42387343	3	RH39648	13	135.19					1	AC016270, AC027357, AL445217
S/G/Y/R/B/O	NT_009910	AL445217	42389159	3	RH39654	13	135.19					1	AC016270, AC027357, AL445217
S/G/Y/R/B/O	NT_009910	AL445217	42393907	3	RH101944	13	131.28					1	AC016270, AC027357, AL445217
S/G/Y/R/B/O	NT_009910	AL138709	42433370	3	WI-5808					13	128.20	1	AC016270, AC027357, AL138709
S/G/Y/R/B/O	NT_009910	AL627430	42491870	3
S/G/Y/R/B/O	NT_009910	AL607148	42502281	3
S/G/Y/R/B/O	NT_009910	AL138823	42718504	3	WI-4237					13	128.60	1	AL138823
S/G/Y/R/B/O	NT_009910	AL136959	42755241	3
S/G/Y/R/B/O	NT_009910	AL445703	42777985	3

NT_009910 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_009910	AL161714	42860942	3
S/G/Y/R/B/O	NT_009910	AL162713	42956408	3
S/G/Y/R/B/O	NT_009910	AL512506	43131825	2	RH65800	13	148.50					1		AC016501, AL356385, AL512506
S/G/Y/R/B/O	NT_009910	AL512506	43174930	2	RH25418	1	694.31					2	AC096637,	AC016501, AC096637, AL356385, AL512506
S/G/Y/R/B/O	NT_009910	AL512506	43265274	2	RH102730	13	146.31					1		AC013669, AC016501, AL512506
S/G/Y/R/B/O	NT_009910	AL646099	43310362	3	RH45062	13	146.31					1		AC013669, AL646099
S/G/Y/R/B/O	NT_009910	AL589745	43372064	2
S/G/Y/R/B/O	NT_009910	AL162379	43541538	3
S/G/Y/R/B/O	NT_009910	AL138960	43677618	3	RH92598	13	131.28					1		AL138960
S/G/Y/R/B/O	NT_009910	AL138960	43713668	3	RH53426	13	148.75			13	119.70	1		AF256226, AL138960
S/G/Y/R/B/O	NT_009910	AL138960	43713670	3	IB1310					13	168.00	1		AF256226, AL138960
S/G/Y/R/B/O	NT_009910	AL139184	43716738	3	RH48616	13	131.28					1		AF256226, AL139184
S/G/Y/R/B/O	NT_009910	AL139184	43728834	3	D13S757					13	128.60	1		AL139184
S/G/Y/R/B/O	NT_009910	AL139184	43791637	3	RH42733	13	132.87	13	1086.00			1	AL356107,	AL139184, AL356107
S/G/Y/R/B/O	NT_009910	AL356107	43876659	3	RH48481	13	148.81					1		AL356107
S/G/Y/R/B/O	NT_009910	AL356515	43931287	3
S/G/Y/R/B/O	NT_009910	AL136966	44027879	3	CHLC.GATA53A06					13	130.60	1		AL136966
S/G/Y/R/B/O	NT_009910	AL354816	44223453	3	AFM023WC1					13	136.80	1		AL354816
S/G/Y/R/B/O	NT_009910	AL354816	44230628	3	RH68789	13	148.81					1		AL354816
S/G/Y/R/B/O	NT_009910	AL354816	44230680	3	SGC35199					13	130.60	1		AL354816
S/G/Y/R/B/O	NT_009910	AL354816	44230680	3	RH53250	13	144.59					1		AL354816
S/G/Y/R/B/O	NT_009910	AL359706	44311836	3	RH75256	13	135.29					1		AL359706
S/G/Y/R/B/O	NT_009910	AL359706	44312257	3	RH39673	13	134.60					1		AL359706
S/G/Y/R/B/O	NT_009910	AL359706	44313603	3	WI-14099					13	130.40	1		AL359706
S/G/Y/R/B/O	NT_009910	AL359706	44313603	3	RH53167	13	144.59					1		AL359706
S/G/Y/R/B/O	NT_009910	AL138693	44473255	3	WI-13796					13	131.60	1		AL138693
S/G/Y/R/B/O	NT_009910	AL138693	44473255	3	RH53165	13	148.23					1		AL138693
S/G/Y/R/B/O	NT_009910	AL138693	44473324	3	RH53214	13	135.29			13	130.60	1		AL138693
S/G/Y/R/B/O	NT_009910	AL138963	44563706	3	RH14130			13	1069.00			1		AL138963, AL627107
S/G/Y/R/B/O	NT_009910	AL138963	44563762	3	RH39686	13	135.70					1		AL138963, AL627107
S/G/Y/R/B/O	NT_009910	AL138963	44564660	3	RH53350	13	135.60	13	1069.00	13	130.40	1		AL138963, AL627107
S/G/Y/R/B/O	NT_009910	AL138963	44564683	3	RH47192	13	148.81					1		AL138963, AL627107
S/G/Y/R/B/O	NT_009910	AL138963	44617072	3	RH1221			13	1122.00			1		AJ400717, AL138963, AL627107
S/G/Y/R/B/O	NT_009910		-		RH16856	13	135.23					0		AL627107
S/G/Y/R/B/O	NT_009910		-		WI-16852					13	128.40	0		AL627107
S/G/Y/R/B/O	NT_009910		-		RH39668	13	135.49					0		AL627107
S/G/Y/R/B/O	NT_009910		-		RH39681	13	135.29					0