Chromosome 7 - YAC Map - Single Contig

Chromosome 7 - YAC Map - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_029998	NT_007968	NT_033967	NT_033174	NT_033965	NT_007819	NT_033177	NT_023530
NT_030008	NT_033968	NT_023629	NT_028235	NT_030001	NT_033184	NT_033969	NT_007758
NT_007834	NT_017168	NT_033966	NT_033176	NT_033964	NT_007930	NT_029999	NT_033180
NT_007912	NT_023632	NT_007933	NT_030012	NT_023649	NT_007688	NT_027067	NT_033179
NT_033181	NT_007914	NT_033182	NT_033175	NT_007666	NT_007905	NT_007741	NT_028233

NT_033965

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033965	AC073109	11755058	3	WI-5018	7	26.00	1		AC073109
S/G/Y/R/B/O	NT_033965	AC092213	11909790	3	WI-4103	7	27.00	1	AC007270,	AC007270, AC092213
S/G/Y/R/B/O	NT_033965	AC007270	11942702	3	WI-4506	7	25.00	1		AC007270
S/G/Y/R/B/O	NT_033965	AC007745	11999537	3
S/G/Y/R/B/O	NT_033965	AC007321	12188201	3	WI-5964	7	28.00	1		AC007321
S/G/Y/R/B/O	NT_033965	AC013470	12209472	3
S/G/Y/R/B/O	NT_033965	AC092064	12379995	3
S/G/Y/R/B/O	NT_033965	AC005281	12394659	3
S/G/Y/R/B/O	NT_033965	AC073232	12500097	3
S/G/Y/R/B/O	NT_033965	AC011891	12503143	3
S/G/Y/R/B/O	NT_033965	AC005228	12576424	3
S/G/Y/R/B/O	NT_033965	AC006000	12678232	3
S/G/Y/R/B/O	NT_033965	AC007243	12802202	3
S/G/Y/R/B/O	NT_033965	AC005681	12928393	3
S/G/Y/R/B/O	NT_033965	AC006996	13087805	3	WI-4656	7	33.00	1		AC006996
S/G/Y/R/B/O	NT_033965	AC011287	13206801	3
S/G/Y/R/B/O	NT_033965	AC084312	13339544	3
S/G/Y/R/B/O	NT_033965	AC073327	13361404	3
S/G/Y/R/B/O	NT_033965	AC011288	13507208	3	D7S664	7	34.00	1		AC011288
S/G/Y/R/B/O	NT_033965	AC005019	13584410	3
S/G/Y/R/B/O	NT_033965	AC004857	13752361	3	WI-7413	7	36.00	1		AC004857
S/G/Y/R/B/O	NT_033965	AC004909	13847021	3
S/G/Y/R/B/O	NT_033965	AC005039	13988997	3	WI-5512	7	37.00	1		AC005039
S/G/Y/R/B/O	NT_033965	AC005248	14129987	3
S/G/Y/R/B/O	NT_033965	AC011229	14225264	3	AFM116XH6	7	38.00	2	AC037195,	AC011229, AC037195
S/G/Y/R/B/O	NT_033965	AC105459	14303091	3
S/G/Y/R/B/O	NT_033965	AC073258	14447189	3
S/G/Y/R/B/O	NT_033965	AC006150	14642665	3	AFMB347YE1	7	39.00	1		AC006150
S/G/Y/R/B/O	NT_033965	AC006045	14714198	3
S/G/Y/R/B/O	NT_033965	AC006458	14996937	3	WI-5657	7	41.00	1		AC006458
S/G/Y/R/B/O	NT_033965	AC091789	15073472	3	AFM074ZG5	7	42.00	1		AC091789
S/G/Y/R/B/O	NT_033965	AC091789	15089283	3	D7S2557	7	40.00	1		AC091789
S/G/Y/R/B/O	NT_033965	AC099651	15158386	3
S/G/Y/R/B/O	NT_033965	AC099412	15319756	3	WI-3234	7	43.00	1	AC012061,	AC012061, AC099412
S/G/Y/R/B/O	NT_033965	AC012061	15321072	3
S/G/Y/R/B/O	NT_033965	AC004452	15400742	3
S/G/Y/R/B/O	NT_033965	AC005550	15482772	3
S/G/Y/R/B/O	NT_033965	AC006041	15615809	3
S/G/Y/R/B/O	NT_033965	AC005536	15702367	3
S/G/Y/R/B/O	NT_033965	AC074006	15867694	3
S/G/Y/R/B/O	NT_033965	AC006035	15874090	3
S/G/Y/R/B/O	NT_033965	AC073629	16056262	3
S/G/Y/R/B/O	NT_033965	AC004741	16090143	3
S/G/Y/R/B/O	NT_033965	AC079155	16202185	3
S/G/Y/R/B/O	NT_033965	AC005014	16325557	3
S/G/Y/R/B/O	NT_033965	AC073201	16543938	3	WI-523	7	45.00	1		AC073117, AC073201, AC073411
S/G/Y/R/B/O	NT_033965	AC073333	16552380	3
S/G/Y/R/B/O	NT_033965	AC098592	16717796	3
S/G/Y/R/B/O	NT_033965	AC010749	16906497	3
S/G/Y/R/B/O	NT_033965	AC073332	16926994	3

NT_033965 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033965	AC092099	17058985	3
S/G/Y/R/B/O	NT_033965	AC003075	17097922	3	AFMB319XC5	7	46.00	1		AC003075
S/G/Y/R/B/O	NT_033965	AC003075	17199670	3	WI-7911	7	47.00	1		AC003075
S/G/Y/R/B/O	NT_033965	AC019117	17211555	3
S/G/Y/R/B/O	NT_033965	AC017060	17399379	3	D7S2508	7	48.00	1		AC017060
S/G/Y/R/B/O	NT_033965	AC017060	17414169	3	D7S507	7	49.00	1		AC017060
S/G/Y/R/B/O	NT_033965	AC006482	17451737	3
S/G/Y/R/B/O	NT_033965	AC073205	17642768	3	AFM144ZA1	7	51.00	1		AC073205
S/G/Y/R/B/O	NT_033965	AC073205	17726463	3	AFMA046XB5	7	50.00	1		AC073205
S/G/Y/R/B/O	NT_033965	AC080080	17781819	3
S/G/Y/R/B/O	NT_033965	AC092200	17934738	3
S/G/Y/R/B/O	NT_033965	AC074193	17940719	3
S/G/Y/R/B/O	NT_033965	AC005249	17983099	3
S/G/Y/R/B/O	NT_033965	AC091697	18145430	3
S/G/Y/R/B/O	NT_033965	AC010082	18205964	3	D7S488	7	53.00	1		AC010082, AC011075, AL358872
S/G/Y/R/B/O	NT_033965	AC002433	18447999	3	AFM218ZB2	7	52.00	1		AC002433, AC073637, AC079108
S/G/Y/R/B/O	NT_033965	AC002124	18448471	3
S/G/Y/R/B/O	NT_033965	AC002088	18585046	3	D7S638	7	54.00	1	AC016186,	AC002088, AC007555, AC016186
S/G/Y/R/B/O	NT_033965	AC002410	18634821	3
S/G/Y/R/B/O	NT_033965	AC004994	18730838	3
S/G/Y/R/B/O	NT_033965	AC004744	18810969	3
S/G/Y/R/B/O	NT_033965	AC003073	18896348	3
S/G/Y/R/B/O	NT_033965	AC003986	19019202	3	D7S2495	7	55.00	1		AC003986
S/G/Y/R/B/O	NT_033965	AC006381	19192594	3	D7S2559	7	56.00	1		AC006381
S/G/Y/R/B/O	NT_033965	AC007091	19280962	3	D7S503	7	57.00	1		AC007091
S/G/Y/R/B/O	NT_033965	AC006397	19436346	3	CHLC.GATA2G04	7	58.00	1		AC006397
S/G/Y/R/B/O	NT_033965	AC004940	19522407	3
S/G/Y/R/B/O	NT_033965	AC004543	19572715	3
S/G/Y/R/B/O	NT_033965	AC003990	19694636	3
S/G/Y/R/B/O	NT_033965	AC005062	19799763	3	D7S654	7	59.00	1		AC005062
S/G/Y/R/B/O	NT_033965	AC005062	19884607	3	AFMB340XH5	7	60.00	1		AC005062
S/G/Y/R/B/O	NT_033965	AC007001	19892957	3
S/G/Y/R/B/O	NT_033965	AC005083	20001175	3
S/G/Y/R/B/O	NT_033965	AC099342	20147260	3
S/G/Y/R/B/O	NT_033965	AC004130	20175012	3
S/G/Y/R/B/O	NT_033965	AC003091	20289227	3
S/G/Y/R/B/O	NT_033965	AC007095	20426844	3
S/G/Y/R/B/O	NT_033965	AC002486	20522352	3	CHLC.GATA41G07	7	203.00	1	AC005060,	AC005060
S/G/Y/R/B/O	NT_033965	AC002486	20522357	3	CHLC.GATA85B06	7	62.00	1	AC005060,	AC005060
S/G/Y/R/B/O	NT_033965	AC005060	20522555	3
S/G/Y/R/B/O	NT_033965	AC005251	20661601	3	D7S2535	7	63.00	1		AC005251
S/G/Y/R/B/O	NT_033965	AC007090	20734960	3
S/G/Y/R/B/O	NT_033965	AC080068	20802989	3
S/G/Y/R/B/O	NT_033965	AC006481	20863612	3
S/G/Y/R/B/O	NT_033965	AC093649	21018145	3	WI-3539	7	64.00	1		AC093649
S/G/Y/R/B/O	NT_033965	AC078791	21026475	3
S/G/Y/R/B/O	NT_033965	AC005094	21108373	3
S/G/Y/R/B/O	NT_033965	AC004595	21367986	3	WI-9081	7	65.00	1		AC004595
S/G/Y/R/B/O	NT_033965	AC102952	21402221	3
S/G/Y/R/B/O	NT_033965	AC073102	21440808	3

NT_033965 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	All Accessions
S/G/Y/R/B/O	NT_033965	AC013481	21519817	3
S/G/Y/R/B/O	NT_033965	AC005078	21622188	3	D7S493	7	67.00	1	AC005078, AC092097
S/G/Y/R/B/O	NT_033965	AC004002	21652041	3	WI-4980	7	68.00	1	AC004002
S/G/Y/R/B/O	NT_033965	AC004002	21687358	3	WI-9859	7	66.00	1	AC004002
S/G/Y/R/B/O	NT_033965	AC099653	21735262	3
S/G/Y/R/B/O	NT_033965	AC074379	21781592	3
S/G/Y/R/B/O	NT_033965	AC005079	21913538	3	GCT16H03	7	70.00	1	AC005055, AC005079
S/G/Y/R/B/O	NT_033965	AC005079	21994583	3	D7S2510	7	69.00	1	AC005059, AC005079
S/G/Y/R/B/O	NT_033965	AC099759	22221953	3
S/G/Y/R/B/O	NT_033965	AC005061	22321908	3
S/G/Y/R/B/O	NT_033965	AC002480	22524850	3	CHLC.GGAT2B11	7	74.00	1	AC002480
S/G/Y/R/B/O	NT_033965	AC091800	22552406	3
S/G/Y/R/B/O	NT_033965	AC073072	22630998	3	D7S629	7	73.00	1	AC073072
S/G/Y/R/B/O	NT_033965	AC005682	22663874	3
S/G/Y/R/B/O	NT_033965	AC083802	22824113	1
S/G/Y/R/B/O	NT_033965	AC016186	22829223	1
S/G/Y/R/B/O	NT_033965	AC012094	22902629	1
S/G/Y/R/B/O	NT_033965	AC006039	22996190	3	D7S682	7	75.00	1	AC006039
S/G/Y/R/B/O	NT_033965	AC073992	23094739	3
S/G/Y/R/B/O	NT_033965	AC005082	23258882	3	WI-6358	7	76.00	1	AC005082, AC023375
S/G/Y/R/B/O	NT_033965	AC021876	23284599	3
S/G/Y/R/B/O	NT_033965	AC079780	23389067	3
S/G/Y/R/B/O	NT_033965	AC023105	23441446	3
S/G/Y/R/B/O	NT_033965	AC006026	23510312	3
S/G/Y/R/B/O	NT_033965	AC008176	23659981	3
S/G/Y/R/B/O	NT_033965	AC003087	23760151	3	D7S673	7	78.00	1	AC003087
S/G/Y/R/B/O	NT_033965	AC009508	23853327	3
S/G/Y/R/B/O	NT_033965	AC009308	23972541	3
S/G/Y/R/B/O	NT_033965	AC004485	24080523	3
S/G/Y/R/B/O	NT_033965	AC005097	24265839	3
S/G/Y/R/B/O	NT_033965	AC003044	24329054	3	D7S2444	7	79.00	1	AC003044
S/G/Y/R/B/O	NT_033965	AC002530	24409236	3	CHLC.GGAA13E06	7	81.00	1	AC002530
S/G/Y/R/B/O	NT_033965	AC079878	24456932	3
S/G/Y/R/B/O	NT_033965	AC005084	24536903	3	WI-1169	7	80.00	1	AC005084
S/G/Y/R/B/O	NT_033965	AC003093	24644937	3
S/G/Y/R/B/O	NT_033965	AC004016	24805658	3	D7S2493	7	82.00	1	AC004016
S/G/Y/R/B/O	NT_033965	AC004239	24878672	3
S/G/Y/R/B/O	NT_033965	AC004008	24883959	3
S/G/Y/R/B/O	NT_033965	AC079876	24974148	3
S/G/Y/R/B/O	NT_033965	AC004694	25036448	3	CHLC.GATA28C09	7	83.00	1	AC004694
S/G/Y/R/B/O	NT_033965	AC007487	25054250	3	CHLC.ATA1B04	7	84.00	1	AC007487
S/G/Y/R/B/O	NT_033965	AC004129	25191366	3	D7S2457	7	85.00	1	AC083852
S/G/Y/R/B/O	NT_033965	AC003985	25297609	3	D7S529	7	86.00	1	AC003985
S/G/Y/R/B/O	NT_033965	AC005100	25343231	3
S/G/Y/R/B/O	NT_033965	AC091705	25501011	3	AFMB318YB9	7	88.00	2	AC091705, AL451002
S/G/Y/R/B/O	NT_033965	AC091705	25501022	3	D7S2534	7	87.00	2	AC091705, AL451002
S/G/Y/R/B/O	NT_033965	AC003090	25538814	3	WI-1928	7	89.00	2	AC003090, AC079358, AL451002
S/G/Y/R/B/O	NT_033965	AC005165	25614729	3
S/G/Y/R/B/O	NT_033965	AC018706	25844531	3	D7S2449	7	90.00	1	AC018706
S/G/Y/R/B/O	NT_033965	AC010719	25897257	3	WI-5900	7	91.00	1	AC010719

NT_033965 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033965	AC004520	26073925	3	D7S2538	7	92.00	1		AC004520
S/G/Y/R/B/O	NT_033965	AC010677	26164503	3	WI-9566	7	93.00	1		AC010677
S/G/Y/R/B/O	NT_033965	AC074295	26256265	3
S/G/Y/R/B/O	NT_033965	AC004540	26322468	3
S/G/Y/R/B/O	NT_033965	AC004947	26454025	3
S/G/Y/R/B/O	NT_033965	AC003999	26671215	3	D7S2440	7	94.00	1		AC003999
S/G/Y/R/B/O	NT_033965	AC003999	26676472	3	WI-3788	7	95.00	1		AC003999
S/G/Y/R/B/O	NT_033965	AC011299	26711086	3
S/G/Y/R/B/O	NT_033965	AC091698	26858598	3
S/G/Y/R/B/O	NT_033965	AC073472	26870433	3
S/G/Y/R/B/O	NT_033965	AC004079	26998423	3	WI-11218	7	99.00	1		AC004079, AC079931
S/G/Y/R/B/O	NT_033965	AC004079	27022940	3	WI-6441	7	98.00	1		AC004079, AC079931
S/G/Y/R/B/O	NT_033965	AC004079	27039909	3	WI-6426	7	97.00	1		AC004079, AC079931
S/G/Y/R/B/O	NT_033965	AC010990	27071693	3
S/G/Y/R/B/O	NT_033965	AC004080	27079902	3	WI-7172	7	101.00	1		AC004080
S/G/Y/R/B/O	NT_033965	AC004080	27121976	3	WI-7794	7	100.00	1		AC004080, X58430
S/G/Y/R/B/O	NT_033965	AC004996	27247083	3	D7S2564	7	102.00	1		AC004996
S/G/Y/R/B/O	NT_033965	AC004996	27281697	3	D7S2441	7	96.00	1		AC004996
S/G/Y/R/B/O	NT_033965	AC004009	27308077	3
S/G/Y/R/B/O	NT_033965	AC073150	27388642	3
S/G/Y/R/B/O	NT_033965	AC007130	27546775	3	D7S2556	7	103.00	1		AC007130
S/G/Y/R/B/O	NT_033965	AC007130	27586374	3	WI-5230	7	106.00	1		AC007130
S/G/Y/R/B/O	NT_033965	AC005091	27656682	3	CHLC.ATC6	7	105.00	1		AC005091
S/G/Y/R/B/O	NT_033965	AC004549	27720004	3
S/G/Y/R/B/O	NT_033965	AC004007	27843695	3
S/G/Y/R/B/O	NT_033965	AC004885	27949253	3	CHLC.GGAA3F06	7	107.00	1		AC004885
S/G/Y/R/B/O	NT_033965	AC004885	28109445	3	D7S516	7	108.00	1		AC055735
S/G/Y/R/B/O	NT_033965	AC005017	28112239	3
S/G/Y/R/B/O	NT_033965	AC006367	28277393	3	CHLC.GATA91C01	7	109.00	1		AC006367
S/G/Y/R/B/O	NT_033965	AC006980	28379484	3
S/G/Y/R/B/O	NT_033965	AC003074	28533863	3	WI-10785	7	110.00	1	AC027122,	AC003074, AC027122
S/G/Y/R/B/O	NT_033965	AC006331	28548873	3
S/G/Y/R/B/O	NT_033965	AC027122	28568786	1	AFMA245YE5	7	111.00	2	AC005105,	AC005105, AC027122
S/G/Y/R/B/O	NT_033965		-		WI-7414	7	35.00	1	AC008278,	AC008278
S/G/Y/R/B/O	NT_033965		-		WI-9592	7	44.00	1	AC016889,	AC016889
S/G/Y/R/B/O	NT_033965		-		CHLC.GATA2G07	7	61.00	1	AC023669,	AC023669
S/G/Y/R/B/O	NT_033965		-		CHLC.GATA4B05	7	71.00	1		AP000707
S/G/Y/R/B/O	NT_033965		-		CHLC.GATA116D02	7	72.00	1	AP002427,	AP002427
S/G/Y/R/B/O	NT_033965		-		WI-7425	7	77.00	1	AL607067,	AF023268, AL353760, AL607067
S/G/Y/R/B/O	NT_033965		-		D7S2416	7	104.00	0