Chromsome Reports

Chromosome 3 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_005927	NT_028123	NT_006044	NT_022517	NT_034531	NT_005564	NT_005762	NT_005646
NT_028139	NT_034532	NT_005580	NT_034533	NT_005498	NT_005825	NT_034534	NT_029949
NT_034678	NT_034682	NT_030623	NT_022567	NT_005990	NT_034535	NT_022439	NT_006014
NT_033032	NT_005986	NT_033038	NT_005787	NT_022481	NT_005607	NT_005999	NT_005530
NT_029258	NT_005531	NT_022473	NT_022423	NT_005769	NT_005526	NT_034536	NT_005644
NT_034537	NT_034538	NT_022665	NT_022446	NT_034539	NT_005882	NT_005684	NT_005663
NT_022554	NT_022459	NT_006031	NT_022419	NT_022420	NT_022642	NT_022452	NT_022435
NT_022497	NT_034540	NT_022401	NT_022475	NT_034541	NT_022451	NT_034542	NT_005509
NT_034543	NT_005527	NT_033050	NT_034544	NT_030634	NT_033041	NT_005863	NT_022454
NT_025670	NT_030622	NT_031768	NT_019350	NT_022434	NT_029256	NT_034545	NT_006042
NT_005795	NT_015150	NT_022445	NT_030625	NT_029269	NT_005994	NT_033022	NT_029257
NT_005513	NT_034546	NT_005543	NT_034547	NT_005588	NT_022513	NT_006025	NT_034548
NT_005823	NT_034549	NT_034550	NT_034551	NT_022393	NT_005824	NT_034552	NT_034553
NT_025663	NT_034554	NT_005567	NT_025664	NT_005655	NT_005832	NT_034555	NT_022502
NT_034556	NT_005772	NT_019358	NT_034557	NT_005591	NT_005775	NT_029939	NT_005616
NT_005539	NT_022555	NT_034558	NT_005849	NT_005678	NT_034559	NT_005612	NT_033046
NT_034560	NT_033030	NT_034561	NT_022463	NT_022594	NT_022421	NT_022518	NT_034562
NT_005638	NT_022397	NT_034563	NT_022416	NT_025667	NT_022458	NT_034564	NT_022509
NT_034565	NT_022396	NT_034566	NT_005952	NT_022676	NT_034567	NT_029253	NT_005910
NT_022549	NT_033009	NT_005962	NT_034568	NT_005883	NT_034569	NT_034570	NT_005571
NT_033013	NT_029928	NT_005834	NT_034601	NT_005535	NT_033016	NT_022508

NT_005580

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_005580	AC112211	32312278	3	none	1 blue	3 blue 1 green	13 confirm
NT_005580	AC123900	32550061	1	1 blue	1 blue	6 blue 1 green	25 confirm
NT_005580	AC122176	32639460	1	none	none	none	17 confirm
NT_005580	AC093114	32724155	3	none	1 blue	9 blue 1 green	12 confirm
NT_005580	AC117943	32870165	1	none	none	none	6 confirm
NT_005580	AC113170	32970862	1	1 blue	2 blue	3 blue	8 confirm 1 red
NT_005580	AC112220	33018629	3	none	none	none	3 confirm
NT_005580	AC113168	33043879	3	none	1 blue	9 blue 1 green	10 confirm 3 red
NT_005580	AC123901	33202745	1	none	none	1 blue	11 confirm
NT_005580	AC099051	33402432	3	1 blue	2 blue	1 blue	21 confirm 1 red
NT_005580	AC123023	33459479	1	none	1 blue	1 blue	19 confirm
NT_005580	AC092023	33557118	3	none	1 blue	none	19 confirm 1 red
NT_005580	AC099776	33722109	3	none	none	none	23 confirm
NT_005580	AC018359	33876600	3	4 blue	5 blue	2 blue	20 confirm
NT_005580	AC007483	33967897	3	none	none	none	16 confirm
NT_005580	AC092054	34101847	3	none	none	none	16 confirm
NT_005580	AC112223	34252038	3	none	1 blue	2 blue	15 confirm
NT_005580	AC093557	34341840	3	none	none	none	12 confirm
NT_005580	AC108486	34443224	1	none	none	none	2 confirm
NT_005580	AC109585	34448000	1	none	none	1 blue	13 confirm
NT_005580	AC096916	34549997	1	none	none	none	23 confirm
NT_005580	AC092052	34697955	3	none	none	none	25 confirm
NT_005580	AC016943	34901159	3	none	none	5 blue 1 green	18 confirm
NT_005580	AC055785	35074693	1	none	none	none	1 confirm
NT_005580	AC104308	35079831	1	none	none	3 blue 1 green	17 confirm

NT_005580 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_005580	AC024097	35144777	1	none	none	none	7 confirm	0 weak
NT_005580	AC124153	35273261	1	none	1 blue	none	23 confirm	0 weak
NT_005580	AC022292	35661118	1	1 blue	1 blue	none	16 confirm	0 weak
NT_005580	AC105901	35472168	3	1 blue	1 blue	none	19 confirm	0 weak
NT_005580	AC092051	35786635	3	1 blue	2 blue	2 blue 1 pink	21 confirm	0 weak
NT_005580	AC098648	35878408	3	none	1 blue	2 blue	12 confirm	0 weak
NT_005580	AC105749	35979940	3	none	none	4 blue	22 confirm	0 weak
NT_005580	AC097360	36180390	3	none	none	none	3 confirm	0 weak
NT_005580	AC011816	36203824	3	none	none	5 blue 1 green	13 confirm	0 weak
NT_005580	AC006583	36371019	1	1 blue	2 blue	5 blue	12 confirm	0 weak
NT_005580	AC058799	36463414	1	none	none	4 blue	6 confirm	0 weak
NT_005580	AC097359	36512387	1	none	1 red	2 blue	10 confirm	0 weak
NT_005580	AP000493	36735150	3	2 blue	2 blue	9 blue	14 confirm	0 weak
NT_005580	AP000494	36867608	3	none	1 blue	2 blue	25 confirm	0 weak
NT_005580	AP000495	37067608	3	none	none	6 blue	14 confirm	0 weak
NT_005580	AP000496	37167608	3	none	none	4 blue	18 confirm	0 weak
NT_005580	AP000497	37349761	3	1 blue	1 blue	10 blue	15 confirm	0 weak
NT_005580	AB026898	37414204	3	none	5 blue	12 blue 4 green	9 confirm 12 blue	0 weak
NT_005580	AP000500	37689083	3	2 blue	2 blue	9 blue	4 confirm 4 blue	0 weak
NT_005580	-			0 yellow	0 yellow	19 yellow