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  Chromosome 3 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_005927 NT_028123 NT_006044 NT_022517 NT_034531 NT_005564 NT_005762 NT_005646
NT_028139 NT_034532 NT_005580 NT_034533 NT_005498 NT_005825 NT_034534 NT_029949
NT_034678 NT_034682 NT_030623 NT_022567 NT_005990 NT_034535 NT_022439 NT_006014
NT_033032 NT_005986 NT_033038 NT_005787 NT_022481 NT_005607 NT_005999 NT_005530
NT_029258 NT_005531 NT_022473 NT_022423 NT_005769 NT_005526 NT_034536 NT_005644
NT_034537 NT_034538 NT_022665 NT_022446 NT_034539 NT_005882 NT_005684 NT_005663
NT_022554 NT_022459 NT_006031 NT_022419 NT_022420 NT_022642 NT_022452 NT_022435
NT_022497 NT_034540 NT_022401 NT_022475 NT_034541 NT_022451 NT_034542 NT_005509
NT_034543 NT_005527 NT_033050 NT_034544 NT_030634 NT_033041 NT_005863 NT_022454
NT_025670 NT_030622 NT_031768 NT_019350 NT_022434 NT_029256 NT_034545 NT_006042
NT_005795 NT_015150 NT_022445 NT_030625 NT_029269 NT_005994 NT_033022 NT_029257
NT_005513 NT_034546 NT_005543 NT_034547 NT_005588 NT_022513 NT_006025 NT_034548
NT_005823 NT_034549 NT_034550 NT_034551 NT_022393 NT_005824 NT_034552 NT_034553
NT_025663 NT_034554 NT_005567 NT_025664 NT_005655 NT_005832 NT_034555 NT_022502
NT_034556 NT_005772 NT_019358 NT_034557 NT_005591 NT_005775 NT_029939 NT_005616
NT_005539 NT_022555 NT_034558 NT_005849 NT_005678 NT_034559 NT_005612 NT_033046
NT_034560 NT_033030 NT_034561 NT_022463 NT_022594 NT_022421 NT_022518 NT_034562
NT_005638 NT_022397 NT_034563 NT_022416 NT_025667 NT_022458 NT_034564 NT_022509
NT_034565 NT_022396 NT_034566 NT_005952 NT_022676 NT_034567 NT_029253 NT_005910
NT_022549 NT_033009 NT_005962 NT_034568 NT_005883 NT_034569 NT_034570 NT_005571
NT_033013 NT_029928 NT_005834 NT_034601 NT_005535 NT_033016 NT_022508


  NT_005999
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_005999AC021400598610471none none none 0 confirm
 0 weak
NT_005999AC098480598623243none 2 blue
 2 blue
 6 confirm
5 blue
 0 weak
NT_005999AC097357599806533none none none 12 confirm
 0 weak
NT_005999AC114398601429281none none none 14 confirm
 0 weak
NT_005999AC103587603047213none none none 7 confirm
 0 weak
NT_005999AC103921603482293none none none 17 confirm
 0 weak
NT_005999AC096919605044933none none 3 blue
1 green
1 pink
 17 confirm
 0 weak
NT_005999AC098482606372243none none 2 blue
2 green
 21 confirm
 0 weak
NT_005999AC004695608410323none none none 8 confirm
 0 weak
NT_005999AC1048496092462811 blue
 2 blue
 3 blue
1 green
 7 confirm
 0 weak
NT_005999AC105939609944783none none none 11 confirm
 0 weak
NT_005999AC092502610918643none 1 blue
 4 blue
 16 confirm
 0 weak
NT_005999AC1041616127142131 blue
1 green
 3 blue
 9 blue
2 green
1 pink
 35 confirm
 0 weak
NT_005999AC0920396140760431 blue
 2 blue
 4 blue
1 pink
 30 confirm
 0 weak
NT_005999AC124860615297811none none none 6 confirm
 0 weak
NT_005999AC093115615643673none 2 blue
 1 green
1 red
 23 confirm
 0 weak
NT_005999AC096915617378603none none none 18 confirm
 0 weak
NT_005999AC1042996198476631 blue
 none 1 blue
 22 confirm
 0 weak
NT_005999AC099545620396303none none none 11 confirm
 0 weak
NT_005999AC0990566218485331 blue
 1 blue
 2 blue
 8 confirm
 0 weak
NT_005999AC104436623362521none none 2 blue
1 green
1 pink
 10 confirm
 0 weak
NT_005999AC025683624272001none none none 16 confirm
 0 weak
NT_005999AC104162625744871none none 1 blue
1 pink
 21 confirm
 0 weak
NT_005999AC092049626917331none none 2 blue
1 green
6 pink
 37 confirm
 0 weak
NT_005999AC011312628818461none none none 7 confirm
 0 weak


  NT_005999 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_005999AC0920406307109831 blue
 1 blue
 8 blue
1 pink
 37 confirm
 0 weak
NT_005999AC092419630735381none none none 4 confirm
 0 weak
NT_005999AC1035576320761831 blue
 1 blue
 2 blue
 25 confirm
 0 weak
NT_005999AC0968886324706512 blue
 2 blue
 2 blue
2 green
 21 confirm
 0 weak
NT_005999AC122178634070001none none 3 blue
 23 confirm
 0 weak
NT_005999AC0085836361978231 blue
 none 1 blue
 17 confirm
 0 weak
NT_005999AC1217666381641511 blue
 1 blue
 1 blue
 8 confirm
4 blue
 0 weak
NT_005999AC0680896384569711 blue
 none none 5 confirm
3 blue
 0 weak
NT_005999-  0 yellow
 1 yellow
 40 yellow