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  Chromosome 3 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_005927 NT_028123 NT_006044 NT_022517 NT_034531 NT_005564 NT_005762 NT_005646
NT_028139 NT_034532 NT_005580 NT_034533 NT_005498 NT_005825 NT_034534 NT_029949
NT_034678 NT_034682 NT_030623 NT_022567 NT_005990 NT_034535 NT_022439 NT_006014
NT_033032 NT_005986 NT_033038 NT_005787 NT_022481 NT_005607 NT_005999 NT_005530
NT_029258 NT_005531 NT_022473 NT_022423 NT_005769 NT_005526 NT_034536 NT_005644
NT_034537 NT_034538 NT_022665 NT_022446 NT_034539 NT_005882 NT_005684 NT_005663
NT_022554 NT_022459 NT_006031 NT_022419 NT_022420 NT_022642 NT_022452 NT_022435
NT_022497 NT_034540 NT_022401 NT_022475 NT_034541 NT_022451 NT_034542 NT_005509
NT_034543 NT_005527 NT_033050 NT_034544 NT_030634 NT_033041 NT_005863 NT_022454
NT_025670 NT_030622 NT_031768 NT_019350 NT_022434 NT_029256 NT_034545 NT_006042
NT_005795 NT_015150 NT_022445 NT_030625 NT_029269 NT_005994 NT_033022 NT_029257
NT_005513 NT_034546 NT_005543 NT_034547 NT_005588 NT_022513 NT_006025 NT_034548
NT_005823 NT_034549 NT_034550 NT_034551 NT_022393 NT_005824 NT_034552 NT_034553
NT_025663 NT_034554 NT_005567 NT_025664 NT_005655 NT_005832 NT_034555 NT_022502
NT_034556 NT_005772 NT_019358 NT_034557 NT_005591 NT_005775 NT_029939 NT_005616
NT_005539 NT_022555 NT_034558 NT_005849 NT_005678 NT_034559 NT_005612 NT_033046
NT_034560 NT_033030 NT_034561 NT_022463 NT_022594 NT_022421 NT_022518 NT_034562
NT_005638 NT_022397 NT_034563 NT_022416 NT_025667 NT_022458 NT_034564 NT_022509
NT_034565 NT_022396 NT_034566 NT_005952 NT_022676 NT_034567 NT_029253 NT_005910
NT_022549 NT_033009 NT_005962 NT_034568 NT_005883 NT_034569 NT_034570 NT_005571
NT_033013 NT_029928 NT_005834 NT_034601 NT_005535 NT_033016 NT_022508


  NT_022517
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_022517AC105933179353331none none none 5 confirm
 0 weak
NT_022517AC105750179926183none none none 4 confirm
 0 weak
NT_022517AC013685181087621none none none 4 confirm
 0 weak
NT_022517AC105765181272411none none 2 blue
 5 confirm
1 blue
 0 weak
NT_022517AC099053183075041none none none 2 confirm
1 red
 0 weak
NT_022517AC0995381847806611 blue
1 green
 2 blue
 none 11 confirm
5 red
 0 weak
NT_022517AC025292186133161none none none 9 confirm
 0 weak
NT_022517AC116098186554851none none none 9 confirm
 0 weak
NT_022517AC015542187387383none none 1 green
 23 confirm
 0 weak
NT_022517AC114337188723241none none none 3 confirm
 0 weak
NT_022517AC061958189019623none none none 19 confirm
 0 weak
NT_022517AC027500190796781none none none 6 confirm
 0 weak
NT_022517AC104182191559803none none none 14 confirm
 0 weak
NT_022517AC097635193127983none 1 blue
 1 blue
1 green
 14 confirm
 0 weak
NT_022517AC022805193951521none none none 0 confirm
 0 weak
NT_022517AC099057193951573none none 2 blue
1 green
1 pink
 18 confirm
 0 weak
NT_022517AC098972195540181none none none 5 confirm
 0 weak
NT_022517AC107622195951973none none none 14 confirm
 0 weak
NT_022517AC116096197058603none none none 14 confirm
 0 weak
NT_022517AC107621198702363none none none 14 confirm
 0 weak
NT_022517AC104835199906201none none none 12 confirm
 0 weak
NT_022517AC099055201840831none none none 16 confirm
 0 weak
NT_022517AC099753203358473none none 1 blue
 15 confirm
 0 weak
NT_022517AC104441205075413none none none 13 confirm
 0 weak
NT_022517AC104183206708903none 2 blue
 8 blue
4 pink
 24 confirm
 0 weak


  NT_022517 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_022517AC009429208405993none none 3 blue
1 pink
 26 confirm
 0 weak
NT_022517AC096914209956883none none none 22 confirm
 0 weak
NT_022517AC092504210987703none 1 blue
 none 5 confirm
 0 weak
NT_022517AC063935211661581none none 3 pink
 4 confirm
11 pink
 0 weak
NT_022517AC022500213041481none none none 0 confirm
 0 weak
NT_022517AC0237982137051332 blue
 3 blue
 1 blue
1 pink
 15 confirm
 0 weak
NT_022517AC096918214404463none none 1 blue
 12 confirm
 0 weak
NT_022517AC092505215318153none none 1 blue
 20 confirm
 0 weak
NT_022517AC098974217003353none none none 21 confirm
 0 weak
NT_022517AC121253218635251none none none 10 confirm
 0 weak
NT_022517AC1047402196561531 blue
 1 blue
 1 blue
 16 confirm
 0 weak
NT_022517AC092421221125253none none none 19 confirm
 0 weak
NT_022517AC1144772238302331 blue
 1 blue
 1 blue
1 green
 16 confirm
 0 weak
NT_022517AC020564223964121none none none 7 confirm
 0 weak
NT_022517AC099544225111471none none 1 blue
 4 confirm
7 green
 0 weak
NT_022517-  1 yellow
 1 yellow
 5 yellow