Chromsome Reports

Chromosome 3 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_005927	NT_028123	NT_006044	NT_022517	NT_034531	NT_005564	NT_005762	NT_005646
NT_028139	NT_034532	NT_005580	NT_034533	NT_005498	NT_005825	NT_034534	NT_029949
NT_034678	NT_034682	NT_030623	NT_022567	NT_005990	NT_034535	NT_022439	NT_006014
NT_033032	NT_005986	NT_033038	NT_005787	NT_022481	NT_005607	NT_005999	NT_005530
NT_029258	NT_005531	NT_022473	NT_022423	NT_005769	NT_005526	NT_034536	NT_005644
NT_034537	NT_034538	NT_022665	NT_022446	NT_034539	NT_005882	NT_005684	NT_005663
NT_022554	NT_022459	NT_006031	NT_022419	NT_022420	NT_022642	NT_022452	NT_022435
NT_022497	NT_034540	NT_022401	NT_022475	NT_034541	NT_022451	NT_034542	NT_005509
NT_034543	NT_005527	NT_033050	NT_034544	NT_030634	NT_033041	NT_005863	NT_022454
NT_025670	NT_030622	NT_031768	NT_019350	NT_022434	NT_029256	NT_034545	NT_006042
NT_005795	NT_015150	NT_022445	NT_030625	NT_029269	NT_005994	NT_033022	NT_029257
NT_005513	NT_034546	NT_005543	NT_034547	NT_005588	NT_022513	NT_006025	NT_034548
NT_005823	NT_034549	NT_034550	NT_034551	NT_022393	NT_005824	NT_034552	NT_034553
NT_025663	NT_034554	NT_005567	NT_025664	NT_005655	NT_005832	NT_034555	NT_022502
NT_034556	NT_005772	NT_019358	NT_034557	NT_005591	NT_005775	NT_029939	NT_005616
NT_005539	NT_022555	NT_034558	NT_005849	NT_005678	NT_034559	NT_005612	NT_033046
NT_034560	NT_033030	NT_034561	NT_022463	NT_022594	NT_022421	NT_022518	NT_034562
NT_005638	NT_022397	NT_034563	NT_022416	NT_025667	NT_022458	NT_034564	NT_022509
NT_034565	NT_022396	NT_034566	NT_005952	NT_022676	NT_034567	NT_029253	NT_005910
NT_022549	NT_033009	NT_005962	NT_034568	NT_005883	NT_034569	NT_034570	NT_005571
NT_033013	NT_029928	NT_005834	NT_034601	NT_005535	NT_033016	NT_022508

NT_005927

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_005927	AC066595	1	3	none	none	none	8 confirm
NT_005927	AC026187	185324	3	1 blue	none	2 blue	18 confirm
NT_005927	AC087091	297246	3	none	1 blue	7 blue	18 confirm
NT_005927	AC011609	439495	3	1 red	none	none	1 confirm
NT_005927	AC087428	453893	3	none	none	1 blue	10 confirm 5 red
NT_005927	AC087431	562202	3	none	none	none	11 confirm 8 red
NT_005927	AC090044	727117	3	none	1 blue	none	16 confirm 1 red
NT_005927	AC087430	964796	3	2 blue	1 pink	none	20 confirm
NT_005927	AC027123	1061406	3	none	1 blue	1 blue	29 confirm
NT_005927	AC034192	1278534	3	1 blue	1 blue	3 blue	30 confirm
NT_005927	AC026214	1376877	3	2 blue	2 blue	3 blue	19 confirm
NT_005927	AC090043	1516427	3	none	none	none	16 confirm 1 red
NT_005927	AC090042	1688177	3	none	none	none	16 confirm 9 red
NT_005927	AC018814	1967019	3	1 blue	1 blue	2 blue	17 confirm 4 red
NT_005927	AC087432	1979668	3	none	none	none	14 confirm 7 red
NT_005927	AC087427	2068676	3	none	none	none	6 confirm 1 red
NT_005927	AC024057	2296725	3	1 blue	1 blue	1 blue	18 confirm
NT_005927	AC026882	2320905	3	none	none	1 blue	19 confirm
NT_005927	AC022008	2424044	3	none	none	none	17 confirm
NT_005927	AC018842	2629125	3	1 blue	none	1 blue	8 confirm
NT_005927	AC066608	2695822	3	none	none	none	12 confirm
NT_005927	AC087094	2816618	3	none	1 blue	1 blue	12 confirm
NT_005927	AC022002	2928747	3	none	1 blue	4 blue	21 confirm
NT_005927	AC024060	3225091	3	1 blue	1 blue	9 blue	29 confirm
NT_005927	AC068314	3228156	3	none	none	none	6 confirm

NT_005927 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_005927	AC026188	3295910	3	none	1 blue	none	17 confirm
NT_005927	AC034195	3427845	3	1 blue	1 blue	1 blue	17 confirm
NT_005927	AC024158	3511478	3	none	none	1 blue	20 confirm
NT_005927	AC023484	3660923	3	none	none	5 blue	25 confirm
NT_005927	AC024167	3833370	3	none	none	3 blue	14 confirm
NT_005927	AC023480	3977529	3	2 blue	2 blue	1 blue	18 confirm
NT_005927	AC018822	4051208	3	none	none	1 blue	14 confirm
NT_005927	AC023483	4170647	3	none	1 blue	1 blue	16 confirm
NT_005927	AC034191	4283602	3	none	none	2 blue	7 confirm
NT_005927	AC024168	4348981	3	none	1 blue	1 blue	18 confirm
NT_005927	AC090944	4516527	3	none	none	1 blue	16 confirm
NT_005927	AC069248	4606589	3	none	none	1 blue	16 confirm
NT_005927	AC018816	4717937	3	none	1 blue	6 blue	20 confirm
NT_005927	AC090955	4884959	3	none	1 blue	3 blue	19 confirm
NT_005927	AC021999	5049882	3	none	1 blue	2 blue	14 confirm
NT_005927	AC026202	5134734	3	none	none	5 blue	22 confirm
NT_005927	AC090842	5301913	3	none	none	none	27 confirm
NT_005927	AC090940	5455672	3	none	2 blue	2 blue	23 confirm
NT_005927	AC090938	5604143	3	none	none	none	29 confirm
NT_005927	AC091069	5750879	3	none	none	none	23 confirm
NT_005927	AC087857	5863417	3	none	none	none	27 confirm
NT_005927	AC066590	5977440	3	none	none	none	5 confirm
NT_005927	AC027119	6057880	3	none	none	none	27 confirm
NT_005927	AC026167	6340116	3	1 blue	none	none	23 confirm
NT_005927	AC024162	6387610	3	none	2 blue	1 blue 1 red	22 confirm

NT_005927 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_005927	AC025920	6549481	3	none	none	none	4 confirm
NT_005927	AC069277	6590517	3	none	none	none	21 confirm
NT_005927	AC023485	6848024	3	1 blue	2 blue	2 blue	17 confirm
NT_005927	AC066606	6850189	3	none	none	none	17 confirm
NT_005927	AC026199	6993780	3	none	1 blue	1 blue 1 red	20 confirm
NT_005927	AC066585	7153316	3	none	none	none	11 confirm
NT_005927	AC034194	7217468	3	none	1 blue	none	20 confirm
NT_005927	AC026204	7380932	3	1 blue	1 blue	1 blue	18 confirm
NT_005927	AC068313	7428824	3	none	none	none	23 confirm
NT_005927	AC077690	7587967	3	none	1 blue	4 blue	15 confirm
NT_005927	AC024171	7714039	3	none	1 blue	1 blue	23 confirm
NT_005927	AC069276	7908248	3	none	none	none	16 confirm
NT_005927	AC018832	8114553	3	1 blue	3 blue	1 blue	24 confirm
NT_005927	AC087589	8236473	3	1 blue	none	none	14 confirm
NT_005927	AC023481	8272517	3	none	none	none	16 confirm
NT_005927	AC087859	8514111	3	1 blue	none	6 blue	20 confirm
NT_005927	AC034187	8549163	3	none	none	none	23 confirm
NT_005927	AC068312	8769700	3	1 blue	none	4 blue	13 confirm
NT_005927	AC008151	8811577	3	none	none	4 blue	16 confirm
NT_005927	AC034186	8874367	3	none	none	5 blue	19 confirm
NT_005927	AC037193	9021646	3	none	1 blue	1 blue	12 confirm
NT_005927	AC066583	9190503	3	none	none	none	2 confirm
NT_005927	AC026191	9294718	3	1 blue	1 blue	3 blue	8 confirm
NT_005927	AC018506	9355023	3	none	1 blue	14 blue	8 confirm
NT_005927	AC026194	9481844	3	none	none	2 blue	8 confirm

NT_005927 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_005927	AC024163	9576979	3	none	none	1 blue	8 confirm
NT_005927	AC022382	9665429	3	none	none	15 blue	3 confirm
NT_005927	AC018809	9806513	3	none	none	12 blue 1 pink	3 confirm
NT_005927	AC018808	9950074	3	none	none	13 blue 1 pink	8 confirm
NT_005927	AC018828	10131840	3	none	none	1 blue	6 confirm
NT_005927	AC022384	10198985	3	none	3 blue	8 blue 1 pink	4 confirm
NT_005927	AC008116	10301825	3	none	none	none	1 confirm
NT_005927	AC090841	10318615	3	none	none	1 blue	12 confirm
NT_005927	AC018839	10483401	3	1 blue	1 blue	2 blue	4 confirm
NT_005927	AC018502	10580867	3	2 blue	1 blue	1 blue	20 confirm
NT_005927	AC018495	10778596	3	1 blue	none	1 blue	20 confirm
NT_005927	AC027128	10819593	3	none	1 blue	5 blue	14 confirm
NT_005927	AC024910	10918473	3	none	1 blue	3 blue	15 confirm
NT_005927	AC066580	11052725	3	none	none	none	8 confirm
NT_005927	AC083855	11094779	3	none	none	3 blue	18 confirm
NT_005927	AC020750	11263601	3	none	none	none	16 confirm
NT_005927	AC026185	11446545	3	1 blue	3 blue	6 blue	7 confirm
NT_005927	AC022001	11597907	3	1 blue	2 blue	5 blue	12 confirm
NT_005927	AC090939	11655257	3	1 blue	1 blue	4 blue	13 confirm
NT_005927	AC090958	11786037	3	none	1 blue	1 blue	21 confirm
NT_005927	AC022234	11957267	3	none	none	none	6 confirm
NT_005927	AC026166	12027981	3	1 blue	1 blue	4 blue	13 confirm
NT_005927	AC091492	12143646	3	none	none	5 blue	17 confirm
NT_005927	AC093174	12301513	3	none	none	none	9 confirm
NT_005927	AC090947	12376245	3	none	none	2 blue	13 confirm

NT_005927 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_005927	AC018500	12546817	3	1 blue	2 blue	7 blue	8 confirm
NT_005927	AC026170	12579842	3	none	none	1 blue	3 confirm
NT_005927	AC034198	12754026	3	1 blue	none	5 blue	8 confirm
NT_005927	AC018836	12852147	3	none	none	3 blue	8 confirm
NT_005927	AC069271	12934956	3	2 blue	none	3 blue	23 confirm
NT_005927	AC090885	13128873	3	none	none	3 blue	18 confirm
NT_005927	AC090942	13292074	3	none	none	none	15 confirm
NT_005927	AC027124	13436754	3	none	none	3 blue	7 confirm
NT_005927	AC090951	13582932	3	1 blue	none	1 blue	7 confirm
NT_005927	AC090509	13610551	3	none	none	none	0 confirm
NT_005927	AC093611	13633547	3	1 blue	none	1 blue	6 confirm
NT_005927	AC090646	13808234	3	4 blue	none	4 blue	5 confirm
NT_005927	AC069462	13887074	3	none	none	1 blue	8 confirm
NT_005927	AC090004	14008202	3	none	none	5 blue	10 confirm
NT_005927	AC093495	14115606	3	none	none	4 blue	13 confirm
NT_005927	AC093496	14297068	3	1 blue	1 blue	2 blue	24 confirm
NT_005927	AC090941	14374598	3	none	none	3 blue	13 confirm
NT_005927	AC090952	14571622	3	1 blue	2 blue	8 blue	12 confirm
NT_005927	AC090957	14644766	3	none	1 blue	3 blue	19 confirm
NT_005927	AC087591	14757514	3	none	none	none	18 confirm
NT_005927	AC090937	14850695	3	none	1 blue	4 blue	28 confirm
NT_005927	AC090954	15106747	3	1 red	1 blue	10 blue	23 confirm
NT_005927	AC087590	15291217	3	1 blue	4 blue	5 blue	13 confirm
NT_005927	AC027125	15338976	3	none	none	6 blue	12 confirm
NT_005927	AC027129	15463831	3	none	2 blue	2 blue	15 confirm

NT_005927 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_005927	AC090950	15748428	3	1 blue	1 blue	5 blue	15 confirm	0 weak
NT_005927	AC090945	15776654	3	none	none	none	15 confirm	0 weak
NT_005927	AC090946	15894935	3	none	none	none	22 confirm	0 weak
NT_005927	AC087858	16156450	3	1 blue	2 blue	2 blue	18 confirm	0 weak
NT_005927	AC090953	16176435	3	none	none	5 blue	14 confirm	0 weak
NT_005927	AC090948	16284722	3	none	1 blue	4 blue 2 green	15 confirm	0 weak
NT_005927	AC010727	16451543	3	1 blue	1 blue	2 blue	14 confirm	0 weak
NT_005927	AC010139	16497107	3	none	none	1 blue	16 confirm	0 weak
NT_005927	AC091493	16658314	3	none	none	none	13 confirm	0 weak
NT_005927	AC091291	16778690	3	2 blue	2 blue	none	17 confirm	0 weak
NT_005927	AC090943	16903243	3	none	1 blue	1 blue	4 confirm	0 weak
NT_005927	AC091491	16945724	3	none	none	1 blue 2 green 1 pink	14 confirm	0 weak
NT_005927	AC090644	17069975	3	none	none	5 blue 1 green	26 confirm	0 weak
NT_005927	AC090960	17260958	3	none	none	none	18 confirm	0 weak
NT_005927	-			0 yellow	0 yellow	13 yellow