Home    Genome Browser    BLAT Search    Help
  Chromosome 16 - Genetic Maps - Single Contig
 

Chromosome 16 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033286 NT_033283 NT_010384 NT_031905 NT_033285 NT_010419 NT_010393 NT_033288
NT_033281 NT_030837 NT_010552 NT_010530 NT_024776 NT_010441 NT_010591 NT_033284
NT_010604 NT_010589 NT_024802 NT_024812 NT_024779 NT_033282 NT_024773 NT_010505
NT_010493 NT_010498 NT_034002 NT_033291 NT_010463 NT_033904 NT_034001 NT_010546
NT_033289 NT_010480 NT_031902 NT_030154 NT_010635 NT_010478 NT_010494 NT_024797
NT_010422 NT_024767 NT_033290 NT_028371 NT_024788 NT_019609 NT_033287 NT_010404
NT_010542


  NT_010552
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010552AC004778116579803AFMB080YH5165.70168.711 AC004778
S/G/Y/R/B/O NT_010552AC004653116790853        
S/G/Y/R/B/O NT_010552AC005211117225783AFMB015WA9166.50168.711AC009171, AC005211, AC009171
S/G/Y/R/B/O NT_010552AC005356117491913        
S/G/Y/R/B/O NT_010552AC012676117685523        
S/G/Y/R/B/O NT_010552AC007606119095883        
S/G/Y/R/B/O NT_010552AC023830120467133        
S/G/Y/R/B/O NT_010552AC020663121507713        
S/G/Y/R/B/O NT_010552AC027687122992743        
S/G/Y/R/B/O NT_010552AC007011123595843        
S/G/Y/R/B/O NT_010552AC026458125208483        
S/G/Y/R/B/O NT_010552AC074051126111943AFMA059WF9165.60167.611 AC074051
S/G/Y/R/B/O NT_010552AC005569128114123        
S/G/Y/R/B/O NT_010552AC005364128322183        
S/G/Y/R/B/O NT_010552AC005347128608453        
S/G/Y/R/B/O NT_010552AC005563128816333        
S/G/Y/R/B/O NT_010552AC068001129143471        
S/G/Y/R/B/O NT_010552AC023822129172032        
S/G/Y/R/B/O NT_010552AC005737131276693AFM312VD5168.301610.361 AC005737
S/G/Y/R/B/O NT_010552AC012175131865783        
S/G/Y/R/B/O NT_010552AC005751134287933AFM249YC5168.401610.361AC009135, AC005751, AC009135
S/G/Y/R/B/O NT_010552AC009135134604663        
S/G/Y/R/B/O NT_010552AC023829135504593        
S/G/Y/R/B/O NT_010552AC007217162377772ATA41E04  1611.461 AC007217
S/G/Y/R/B/O NT_010552AC007217163305632GGAT1D8  1611.461 AC007217
S/G/Y/R/B/O NT_010552AC010552136513821        
S/G/Y/R/B/O NT_010552Z84812136873433        
S/G/Y/R/B/O NT_010552Z84723136984233        
S/G/Y/R/B/O NT_010552Z69719137215873AFMA139WG1160.00161.081AC010552, AC007604, AC010552
S/G/Y/R/B/O NT_010552Z6972013772586316PTEL03  160.001AC010552, AC007604, AC010552, AE006462, Z69720
S/G/Y/R/B/O NT_010552Z84722137805713        
S/G/Y/R/B/O NT_010552Z84813137991093        
S/G/Y/R/B/O NT_010552Z69666138028463        
S/G/Y/R/B/O NT_010552Z84721138167863        
S/G/Y/R/B/O NT_010552Z69706138595373        
S/G/Y/R/B/O NT_010552Z69890138825993        
S/G/Y/R/B/O NT_010552AC004754139107633        
S/G/Y/R/B/O NT_010552Z69667139498563        
S/G/Y/R/B/O NT_010552Z99754139713013        
S/G/Y/R/B/O NT_010552AC004652139932263        
S/G/Y/R/B/O NT_010552AC005202140164993        
S/G/Y/R/B/O NT_010552Z97634140446853        
S/G/Y/R/B/O NT_010552AL023881140781983        
S/G/Y/R/B/O NT_010552AL049542141136773        
S/G/Y/R/B/O NT_010552Z98882141724623        
S/G/Y/R/B/O NT_010552Z97986142088693        
S/G/Y/R/B/O NT_010552Z98883142450763        
S/G/Y/R/B/O NT_010552Z98881142787803        
S/G/Y/R/B/O NT_010552Z84479142821093        
S/G/Y/R/B/O NT_010552AL022341143137023        


  NT_010552 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010552Z92544143341363        
S/G/Y/R/B/O NT_010552Z97653143708363        
S/G/Y/R/B/O NT_010552Z98258143957783        
S/G/Y/R/B/O NT_010552AL031258144245133        
S/G/Y/R/B/O NT_010552AL031033144617163        
S/G/Y/R/B/O NT_010552AL023882144874313        
S/G/Y/R/B/O NT_010552AL031008145228073        
S/G/Y/R/B/O NT_010552AL031716145387503        
S/G/Y/R/B/O NT_010552AL008727145620383        
S/G/Y/R/B/O NT_010552Z93041145943843        
S/G/Y/R/B/O NT_010552Z92845146184513        
S/G/Y/R/B/O NT_010552Z99757146533413        
S/G/Y/R/B/O NT_010552AL024496146857433        
S/G/Y/R/B/O NT_010552AL031707147128533        
S/G/Y/R/B/O NT_010552AL031706147414603        
S/G/Y/R/B/O NT_010552AL031713147543723        
S/G/Y/R/B/O NT_010552AL031598147872743        
S/G/Y/R/B/O NT_010552AE006466148084043        
S/G/Y/R/B/O NT_010552AL031714149869003        
S/G/Y/R/B/O NT_010552AL031709150076333        
S/G/Y/R/B/O NT_010552AL031721150450093        
S/G/Y/R/B/O NT_010552AE006467150815643        
S/G/Y/R/B/O NT_010552AL031600151165513        
S/G/Y/R/B/O NT_010552AL031705151480643        
S/G/Y/R/B/O NT_010552AL031720151905333        
S/G/Y/R/B/O NT_010552AL031719151936173        
S/G/Y/R/B/O NT_010552Z97633152381703        
S/G/Y/R/B/O NT_010552AL133297152801693AFMA134XC1165.00167.051AE006467, AE006467, AL133297
S/G/Y/R/B/O NT_010552Z97652152817103        
S/G/Y/R/B/O NT_010552AL031708153099293        
S/G/Y/R/B/O NT_010552AL031009153445503        
S/G/Y/R/B/O NT_010552AL031710153739183        
S/G/Y/R/B/O NT_010552AL031717153985713        
S/G/Y/R/B/O NT_010552AL031718154417593        
S/G/Y/R/B/O NT_010552AL031724154622713        
S/G/Y/R/B/O NT_010552AL031722154835901        
S/G/Y/R/B/O NT_010552AL132823155215703        
S/G/Y/R/B/O NT_010552AL499628155253013        
S/G/Y/R/B/O NT_010552AL031723155686583        
S/G/Y/R/B/O NT_010552AC005363156275053ATA67B07  166.081AC005606, AC005363, AC005606, AE006640, AL499629
S/G/Y/R/B/O NT_010552AC005606156493853        
S/G/Y/R/B/O NT_010552AC093513156975383        
S/G/Y/R/B/O NT_010552AC005600156992093        
S/G/Y/R/B/O NT_010552L39891157787953        
S/G/Y/R/B/O NT_010552AC005346158175173        
S/G/Y/R/B/O NT_010552AC009065158469302        
S/G/Y/R/B/O NT_010552AC007111158469393        
S/G/Y/R/B/O NT_010552AC098805159297453        
S/G/Y/R/B/O NT_010552AC106820160755542AFM361TE9165.00167.051 AC106820
S/G/Y/R/B/O NT_010552AC025283161065351UT1888  1495.891 AC025283


  NT_010552 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010552AC004035161145483        
S/G/Y/R/B/O NT_010552AC005362161504343        
S/G/Y/R/B/O NT_010552AC004646161731403UT581  167.611AC025283, AC004646, AC025283, AC068380
S/G/Y/R/B/O NT_010552AC004751161991213        
S/G/Y/R/B/O NT_010552AC006112163442963        
S/G/Y/R/B/O NT_010552AC007223166278573AFM297YG51611.701613.121AC007012, AC007012, AC007223
S/G/Y/R/B/O NT_010552AC007012166910903AFMA205WA91611.601613.121 AC007012
S/G/Y/R/B/O NT_010552AC007012167744723AFMA059XC11611.401613.121 AC007012
S/G/Y/R/B/O NT_010552AC003966167862213        
S/G/Y/R/B/O NT_010552AC004232168195643        
S/G/Y/R/B/O NT_010552AJ003147169269613ATA41E08  167.051 AF091512, AJ003147
S/G/Y/R/B/O NT_010552AJ003147170623193AFMB070YG5165.60167.611AC108134, AC108134, AJ003147
S/G/Y/R/B/O NT_010552AJ003147170856663AFMA353YH1165.60167.611AC108134, AC108134, AJ003147
S/G/Y/R/B/O NT_010552AC108134170889323        
S/G/Y/R/B/O NT_010552AC004643170892813        
S/G/Y/R/B/O NT_010552AC004233171209233        
S/G/Y/R/B/O NT_010552AC004235171526553        
S/G/Y/R/B/O NT_010552AC004034171824763        
S/G/Y/R/B/O NT_010552AC004234172164683        
S/G/Y/R/B/O NT_010552AC003965172563953        
S/G/Y/R/B/O NT_010552AC005361172903083        
S/G/Y/R/B/O NT_010552AC005570173180883        
S/G/Y/R/B/O NT_010552AC092117173535552        
S/G/Y/R/B/O NT_010552AC093525175190852        
S/G/Y/R/B/O NT_010552AC005591175975903        
S/G/Y/R/B/O NT_010552AC093517176765313        
S/G/Y/R/B/O NT_010552AC004493178278183        
S/G/Y/R/B/O NT_010552AC004224178360783        
S/G/Y/R/B/O NT_010552AC004494178775733        
S/G/Y/R/B/O NT_010552AC006111180166183GATA73G05  168.161 AC005203, AC006111
S/G/Y/R/B/O NT_010552AC004651181290763AFMA323YF5166.60168.161AC004509, AC004509, AC004651
S/G/Y/R/B/O NT_010552AC004509181303873        
S/G/Y/R/B/O NT_010552AC007151181681543        
S/G/Y/R/B/O NT_010552AC005736183577383AFMA154WC9166.70168.711 AC018981
S/G/Y/R/B/O NT_010552AC004647184987543        
S/G/Y/R/B/O NT_010552AC004750185163563        
S/G/Y/R/B/O NT_010552AC005568185365453        
S/G/Y/R/B/O NT_010552AC009171185588201        
S/G/Y/R/B/O NT_010552 - AFMA175XH11610.60  1AC024953, AC024953
S/G/Y/R/B/O NT_010552 - UT5147  167.610 AF091512
S/G/Y/R/B/O NT_010552 - AFMB281ZE91610.701612.571AC022206, AC022206
S/G/Y/R/B/O NT_010552 - AFMA044TA91610.801613.121AC024953, AC024953
S/G/Y/R/B/O NT_010552 - AFMA301WG91611.501613.121AC024953, AC024953