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  Chromosome 20 - RH Maps - Single Contig
 

Chromosome 20 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_011387 NT_025215 NT_028392 NT_011362 NT_030871 NT_011333


  NT_028392
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL121723296609083RH6410720172.46    2AC004477, AC018521, AC004477, AC018521
S/G/Y/R/B/O NT_028392AL121723296619673RH6564217338.99    1 AL121723
S/G/Y/R/B/O NT_028392AL031650297530273RH9232820167.33    1 AL031650
S/G/Y/R/B/O NT_028392AL121751297648393RH14972  201617.00  1 AL121751
S/G/Y/R/B/O NT_028392AL121751298164223RH10202820169.71    1 AL121751
S/G/Y/R/B/O NT_028392AL110115299387543RH3894220170.94    1  
S/G/Y/R/B/O NT_028392AL110115299461713RH10364720172.46    1 AC023459, AL110115
S/G/Y/R/B/O NT_028392AL117381299816823          
S/G/Y/R/B/O NT_028392AL160175301771863RH1628120173.78    1 AL160175
S/G/Y/R/B/O NT_028392AL359765302499353          
S/G/Y/R/B/O NT_028392AL031658302646883RH1516720176.00    1 AL031658
S/G/Y/R/B/O NT_028392AL031658303208193RH6408720178.38  20172.801 AL031658
S/G/Y/R/B/O NT_028392AL031658303658633RH3753620179.80201597.00  1 AL031658
S/G/Y/R/B/O NT_028392AL031658303687603RH3754320180.81    1 AL031658
S/G/Y/R/B/O NT_028392AL353092304264913          
S/G/Y/R/B/O NT_028392AL049539304572883RH9289020179.80    1 AL049539
S/G/Y/R/B/O NT_028392AL049539304771953RH6402720176.09  20174.301 AL049539, X58743
S/G/Y/R/B/O NT_028392AL049539304773793RH2300620168.23    1 AL049539
S/G/Y/R/B/O NT_028392AL049539304774603RH4542720178.28    1 AL049539, X58743
S/G/Y/R/B/O NT_028392AL049539305426153RH6416320169.03    1 AL049539
S/G/Y/R/B/O NT_028392AL049539305426443RH6375520180.81    1 AL049539
S/G/Y/R/B/O NT_028392AL121897305686083RH2541120175.68    1 AL121897
S/G/Y/R/B/O NT_028392AL121897307078813RH2511020172.15    1 AL121897
S/G/Y/R/B/O NT_028392AL121897307079473RH1217120175.68    1 AL121897
S/G/Y/R/B/O NT_028392AL354800307091403RH5736820168.36  20172.501 AL354800
S/G/Y/R/B/O NT_028392AL354800307092763RH2500220175.68    2AC018630, AC018630, AC079625, AL354800
S/G/Y/R/B/O NT_028392AL354800307096083RH1236620172.24    1 AL354800
S/G/Y/R/B/O NT_028392AL354800307106223RH1215720182.73    1 AL354800
S/G/Y/R/B/O NT_028392AL121583307268573RH10250520171.70    1 AL121583
S/G/Y/R/B/O NT_028392AL121583307312223RH6408220168.23  20175.301 AL121583
S/G/Y/R/B/O NT_028392AL121583308092803RH6414920186.16    1 AL121583
S/G/Y/R/B/O NT_028392AL034550308136313RH38289  201697.00  1 AL034550
S/G/Y/R/B/O NT_028392AL034550308137653RH6609220187.68    1 AL034550
S/G/Y/R/B/O NT_028392AL034550308148823RH2558420188.38    1 AL034550
S/G/Y/R/B/O NT_028392AL034550308149063RH1204420188.38    1 AL034550
S/G/Y/R/B/O NT_028392AL034550308189183RH5726220188.18  20195.901 AL034550
S/G/Y/R/B/O NT_028392AL034550308190243RH1718920188.38    1 AL034550
S/G/Y/R/B/O NT_028392AL034550308230303RH7549220170.14    1 AL034550
S/G/Y/R/B/O NT_028392AL034550308539613RH3750220188.28    1 AC017072, AL034550
S/G/Y/R/B/O NT_028392AL133343309672613RH31475  201693.00  1 AC017072, AL133343
S/G/Y/R/B/O NT_028392AL133343309690003WI-3508    20186.801 AC017072, AL133343
S/G/Y/R/B/O NT_028392AL132653310075033RH6403920191.24  20194.701 AC017072, AL132653
S/G/Y/R/B/O NT_028392AL035071311556303RH6417720191.45201709.00  1 AL035071, AL354832
S/G/Y/R/B/O NT_028392AL035071311883363RH6782120190.59    1 AL035071, AL354832, AL390201
S/G/Y/R/B/O NT_028392AL035071311964533RH1801920191.03    1 AL035071, AL354832
S/G/Y/R/B/O NT_028392AL035071312050593RH1218820190.92    1 AL035071, AL354832
S/G/Y/R/B/O NT_028392AL390298312055333          
S/G/Y/R/B/O NT_028392AL139826312546413          
S/G/Y/R/B/O NT_028392AL121756314580083RH5746720193.00  20201.901 AL121756
S/G/Y/R/B/O NT_028392AL137225314643623          


  NT_028392 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL121901315843973RH3751220193.10  20197.401 AF228348, AL121901
S/G/Y/R/B/O NT_028392AL355392317202983RH7548320194.33    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317434063RH6606420193.00    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317457123RH14970  201758.00  1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317457623RH6606820192.65    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317479563RH14969  201758.00  1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317480963RH6609620193.70    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317545023RH6374320193.00    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317545283RH6700220192.65    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL355392317545383RH4183520193.70    1 AC023015, AL355392
S/G/Y/R/B/O NT_028392AL162505318000973          
S/G/Y/R/B/O NT_028392AL034421318941303RH4912220193.00201797.00  1 AL034421
S/G/Y/R/B/O NT_028392AL034421319634863RH1659120193.00    1  
S/G/Y/R/B/O NT_028392AL121906319705403RH10288820193.10    1 AL121906
S/G/Y/R/B/O NT_028392AL121906319918603RH1218520192.65    1 AF076461, AL121906
S/G/Y/R/B/O NT_028392AL121906319952923RH6376020193.00    1 AF076461, AL121906
S/G/Y/R/B/O NT_028392AL121906319953433RH1839020192.65    1 AF076461, AL121906
S/G/Y/R/B/O NT_028392AL121906319962743RH5717320193.00  20200.201 AF076461, AL121906
S/G/Y/R/B/O NT_028392AL121906319963313RH1054920192.65    1 AF076461, AL121906
S/G/Y/R/B/O NT_028392AL121906320037093RH1717220192.65    1 AL121906
S/G/Y/R/B/O NT_028392AL121906320037333RH1269920194.28    1 AL121906
S/G/Y/R/B/O NT_028392AL121906320222873RH7837920194.39    1 AC023227, AL121906, U47677
S/G/Y/R/B/O NT_028392AL121906320230673RH8022820193.00    1 AC023227, AL121906, U47677
S/G/Y/R/B/O NT_028392AL050349320536763RH5725520194.06  20204.101 AC023227, AL050349
S/G/Y/R/B/O NT_028392AL050349320537733RH3900220194.28    1 AC023227, AL050349
S/G/Y/R/B/O NT_028392AL050349321340653RH9243120194.33    1 AC023227, AL050349
S/G/Y/R/B/O NT_028392AL050349322005343RH5720420195.03  20209.301 AL050349
S/G/Y/R/B/O NT_028392AL050349322006193RH7607620195.87    1 AL050349
S/G/Y/R/B/O NT_028392AL034549322073873          
S/G/Y/R/B/O NT_028392AL031668324264453RH5749120195.03  20209.101 AL031668
S/G/Y/R/B/O NT_028392AL031668324266073RH986220195.98    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324311433RH7676520208.15    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324324163AFMA152YG1    20211.501 AL031668
S/G/Y/R/B/O NT_028392AL031668324348813RH1227720195.98    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324348853RH1163320195.98    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324349453RH3695720195.81    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324350163RH1034620195.46    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324362313RH3584620195.87    2 AL031668
S/G/Y/R/B/O NT_028392AL031668324441683RH3634620195.81    1 AL031668
S/G/Y/R/B/O NT_028392AL031668324451283RH4797920195.87    1 AL031668
S/G/Y/R/B/O NT_028392AL035458326108303RH6415520203.62    1 AL035458, AL137253
S/G/Y/R/B/O NT_028392AL035458326157663RH5727520203.92  20209.501 AL035458, AL137253
S/G/Y/R/B/O NT_028392AL356299326268083RH3900720197.34    1 AL137253, AL356299
S/G/Y/R/B/O NT_028392AL356299326269183RH3897520197.65    1 AL137253, AL356299
S/G/Y/R/B/O NT_028392AL109923328549033RH2637220195.77    1 AL109923
S/G/Y/R/B/O NT_028392AL136173328872853RH4178120197.52    1 AL136173
S/G/Y/R/B/O NT_028392AL118520329066103RH4699020207.61    1 AL118520
S/G/Y/R/B/O NT_028392AL118520329072813RH9362420197.20    1 AL118520
S/G/Y/R/B/O NT_028392AL109824330594173RH6411520203.62  20211.501 AL109824
S/G/Y/R/B/O NT_028392AL109824330596853RH1698820200.16    1 AL109824


  NT_028392 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL109824330614803RH2539520204.24    1 AL109824
S/G/Y/R/B/O NT_028392AL109824330878933RH2855820206.96    1 AL109824
S/G/Y/R/B/O NT_028392AL109824331057503RH2657020206.96    1 AL109824
S/G/Y/R/B/O NT_028392AL049709331918013RH1818420200.16    1 AL049709
S/G/Y/R/B/O NT_028392AL049709331965863RH6405520203.30  20210.901 AL049709
S/G/Y/R/B/O NT_028392AL049709332087983RH7970920207.55    1 AL049709
S/G/Y/R/B/O NT_028392AL049709332372093RH6571920206.96    1 AL049709
S/G/Y/R/B/O NT_028392AL049709332660053RH3748320200.26    1 AL049709
S/G/Y/R/B/O NT_028392AL049709332660053RH35026  201894.00  1 AL049709
S/G/Y/R/B/O NT_028392AL133324332742203RH1218420203.30    1 AL133324
S/G/Y/R/B/O NT_028392AL133324332749873RH1729920200.16    1 AL133324
S/G/Y/R/B/O NT_028392AL132825333489993RH1594620200.06    1 AL132825
S/G/Y/R/B/O NT_028392AL132825333497323RH1217820200.16    1 AL132825
S/G/Y/R/B/O NT_028392AL132825333961243RH6609720197.20    1 AL132825
S/G/Y/R/B/O NT_028392AL135844334619903RH3903320200.16    2AC090439, AC090439, AL135844
S/G/Y/R/B/O NT_028392AL356652335234373RH6955920200.16    1 AB026584, AF106202, AF375468, AL356652
S/G/Y/R/B/O NT_028392AL356652335236293RH6403120197.34  20211.201 AB026584, AF106202, AF375468, AL356652
S/G/Y/R/B/O NT_028392AL121753336216343RH2519820200.06    1 AL121753
S/G/Y/R/B/O NT_028392AL121753336236283RH1056520200.06    1 AL121753
S/G/Y/R/B/O NT_028392AL121753336252243RH5723020203.19201912.0020209.501 AL121753
S/G/Y/R/B/O NT_028392AL121753336489903RH2615620206.96    1 AL121753
S/G/Y/R/B/O NT_028392AL121753336492093RH1217920200.16    1 AL121753
S/G/Y/R/B/O NT_028392AL121753336499303RH3899020203.30    1  
S/G/Y/R/B/O NT_028392AL121753336587743RH4868720200.06    1  
S/G/Y/R/B/O NT_028392AL121752336920843RH6652620203.30    1 AL121752
S/G/Y/R/B/O NT_028392AL389874337558903          
S/G/Y/R/B/O NT_028392AL121586337796343RH6410920203.62    1 AL121586, X80915
S/G/Y/R/B/O NT_028392AL121586338579503RH7816520200.06    1 AL121586
S/G/Y/R/B/O NT_028392AL121586338581893RH2867520207.18    1 AL121586
S/G/Y/R/B/O NT_028392AL121586338671323RH10206520206.96    1 AL121586
S/G/Y/R/B/O NT_028392AL121586338970103WI-10856    20206.801 AL121586
S/G/Y/R/B/O NT_028392AL121586338995683RH3901720200.06    1 AL121586
S/G/Y/R/B/O NT_028392AL121586339037663RH9882220200.06    1 AL121586
S/G/Y/R/B/O NT_028392AL389875339195983          
S/G/Y/R/B/O NT_028392AL109827339724573RH1049720200.06    1 AL109827
S/G/Y/R/B/O NT_028392AL109827339724773SGC31802    20207.001 AL109827
S/G/Y/R/B/O NT_028392AL109827339739543RH2630320206.96    1 AL109827
S/G/Y/R/B/O NT_028392AL109827339965563RH6417220197.34201931.00  1 AL109827
S/G/Y/R/B/O NT_028392AL109827339981803RH6404020203.30  20208.601 AF345335, AL109827
S/G/Y/R/B/O NT_028392AL109827339984323RH37762  201940.00  1 AF345335, AL109827
S/G/Y/R/B/O NT_028392AL109827339985123RH6609820200.06    1 AF345335, AL109827
S/G/Y/R/B/O NT_028392AL109827339985773RH2502320200.06    1 AF345335, AL109827
S/G/Y/R/B/O NT_028392AL109827340153723RH6404420200.16201940.0020206.701 AL109827
S/G/Y/R/B/O NT_028392AL357374340472033RH4178620203.60    1 AL357374
S/G/Y/R/B/O NT_028392AL357374340472503RH3894520200.16    1 AL357374
S/G/Y/R/B/O NT_028392AL357374340778493RH9248120203.30    1 AL357374
S/G/Y/R/B/O NT_028392AL357374340813153RH3899920203.30    1 AL357374
S/G/Y/R/B/O NT_028392AL356422341212343RH9835720203.30    1 AL356422
S/G/Y/R/B/O NT_028392AL078461341860833WI-4482    20206.801 AL078461
S/G/Y/R/B/O NT_028392AL078461341908873AFM240WF8    20211.001 AL078461


  NT_028392 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL078461342284743RH1029753141.31    4AC004067, AC068888, AC073573, AC099329, AC004067, AC021072, AC068888, AC073573, AC099329, AL078461
S/G/Y/R/B/O NT_028392AL109965342950513RH1599520207.61    1 AL109965
S/G/Y/R/B/O NT_028392AL109965342956293RH1218920197.65    1 AL109965
S/G/Y/R/B/O NT_028392AL109965342956403RH1150720197.34    1 AL109965
S/G/Y/R/B/O NT_028392AL109965342956893RH2521020203.92    1 AL109965
S/G/Y/R/B/O NT_028392AL359828343415093          
S/G/Y/R/B/O NT_028392AL035420343920803RH1184120197.42    2AC009318, AC009318, AC016510, AC079846, AL035420
S/G/Y/R/B/O NT_028392AL121895345776133RH1220220207.94    1 AL121895
S/G/Y/R/B/O NT_028392AL121895345778983RH6416120205.17    1 AL121895
S/G/Y/R/B/O NT_028392AL121895345789563RH5736420207.39  20213.601 AL121895
S/G/Y/R/B/O NT_028392AL121895346030693RH8049620205.60    1 AL121895
S/G/Y/R/B/O NT_028392AL121895346321693WI-6464    20214.301 AL121895
S/G/Y/R/B/O NT_028392AL512784346417473          
S/G/Y/R/B/O NT_028392 - RH10327520167.80    0 AC023459
S/G/Y/R/B/O NT_028392 - RH1074120203.09    1AL031662, AC026539, AL031662
S/G/Y/R/B/O NT_028392 - RH1181620194.39    0  
S/G/Y/R/B/O NT_028392 - RH1244220193.70    0  
S/G/Y/R/B/O NT_028392 - RH1628920195.87    0  
S/G/Y/R/B/O NT_028392 - RH2642020197.13    0  
S/G/Y/R/B/O NT_028392 - RH3603720176.32    0  
S/G/Y/R/B/O NT_028392 - RH3896620203.62    0AL356652, AB026584, AF106202, AF375468, AL356652
S/G/Y/R/B/O NT_028392 - RH3900320203.51    0AL050318, AC031984, AL050318
S/G/Y/R/B/O NT_028392 - RH5725920191.21  20196.600  
S/G/Y/R/B/O NT_028392 - IB290    20206.901AL031662, AC026539, AL031662
S/G/Y/R/B/O NT_028392 - RH6417420191.45201701.00  0  
S/G/Y/R/B/O NT_028392 - RH6606720207.83    0  
S/G/Y/R/B/O NT_028392 - RH7809020128.90    0  
S/G/Y/R/B/O NT_028392 - RH7846520197.34    0  
S/G/Y/R/B/O NT_028392 - RH7887120206.96    0  
S/G/Y/R/B/O NT_028392 - RH7924820206.96    0  
S/G/Y/R/B/O NT_028392 - RH8008420171.91    0  
S/G/Y/R/B/O NT_028392 - RH9146420203.09    1AL050318, AC031984, AL050318
S/G/Y/R/B/O NT_028392 - RH9336720191.21    0  
S/G/Y/R/B/O NT_028392 - RH9915320193.00    0