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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010879 | AC107892 | 75827565 | 3 | chr18 | NT_010879 | AC109314 | 76001309 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010879 | AC109314 | 76001309 | 2 | chr18 | NT_010879 | AC087675 | 76037700 | 3 | 41106 | 0 | 0 | 41106 |
S/G/Y/R/B/O |
NT_010879 | AC109314 | 76001309 | 2 |   |   | AC027359 | 75633664 | | 158310 | 0 | 0 | 158310 |
S/G/Y/R/B/O |
NT_010879 | AC109314 | 76001309 | 2 |   |   | AP001854 | 76037700 | | 17179 | 0 | 0 | 17179 |
S/G/Y/R/B/O |
NT_010879 | AC087675 | 76037700 | 3 | chr18 | NT_010879 | AC087399 | 76108522 | 3 | 95349 | 0 | 0 | 95349 |
S/G/Y/R/B/O |
NT_010879 | AC087675 | 76037700 | 3 |   |   | AC021144 | 76037700 | | 87023 | 0 | 0 | 87023 |
S/G/Y/R/B/O |
NT_010879 | AC087675 | 76037700 | 3 |   |   | AJ009614 | 76001309 | | 99792 | 6505 | 45073 | 151370 |
S/G/Y/R/B/O |
NT_010879 | AC087675 | 76037700 | 3 |   |   | AJ009614 | 76001309 | | 99792 | 6505 | 45073 | 151370 |
S/G/Y/R/B/O |
NT_010879 | AC087675 | 76037700 | 3 |   |   | AP001854 | 76001309 | | 92064 | 2257 | 66078 | 160399 |
S/G/Y/R/B/O |
NT_010879 | AC087399 | 76108522 | 3 | chr18 | NT_010879 | AC012572 | 76279842 | 3 | 14048 | 0 | 0 | 14048 |
S/G/Y/R/B/O |
NT_010879 | AC087399 | 76108522 | 3 |   |   | AC021144 | 76279842 | | 113953 | 1769 | 4298 | 120020 |
S/G/Y/R/B/O |
NT_010879 | AC087399 | 76108522 | 3 |   |   | AJ009614 | 76037700 | | 58415 | 5557 | 42543 | 106515 |
S/G/Y/R/B/O |
NT_010879 | AC087399 | 76108522 | 3 |   |   | AJ009614 | 76037700 | | 58415 | 5557 | 42543 | 106515 |
S/G/Y/R/B/O |
NT_010879 | AC087399 | 76108522 | 3 |   |   | AP001854 | 76037700 | | 45640 | 2251 | 49555 | 97446 |
S/G/Y/R/B/O |
NT_010879 | AC012572 | 76279842 | 3 | chr18 | NT_010879 | AC044873 | 76438406 | 3 | 13039 | 0 | 0 | 13039 |
S/G/Y/R/B/O |
NT_010879 | AC012572 | 76279842 | 3 |   |   | AC021144 | 76037700 | | 10386 | 0 | 5724 | 16110 |
S/G/Y/R/B/O |
NT_010879 | AC012572 | 76279842 | 3 |   |   | AC023658 | 76037700 | | 43699 | 0 | 0 | 43699 |
S/G/Y/R/B/O |
NT_010879 | AC044873 | 76438406 | 3 | chr18 | NT_010879 | AC091027 | 76604795 | 3 | 12055 | 0 | 0 | 12055 |
S/G/Y/R/B/O |
NT_010879 | AC044873 | 76438406 | 3 |   |   | AC023658 | 76279842 | | 120787 | 0 | 2594 | 123381 |
S/G/Y/R/B/O |
NT_010879 | AC091027 | 76604795 | 3 | chr18 | NT_010879 | AC099689 | 76721261 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010879 | AC091027 | 76604795 | 3 |   |   | AC021857 | 76604795 | | 87699 | 0 | 0 | 87699 |
S/G/Y/R/B/O |
NT_010879 | AC091027 | 76604795 | 3 |   |   | AP001852 | 76438406 | | 18180 | 9038 | 2985 | 30203 |
S/G/Y/R/B/O |
NT_010879 | AC099689 | 76721261 | 3 | chr18 | NT_010879 | AP001856 | 76875473 | 1 | 72631 | 2708 | 20874 | 96213 |
S/G/Y/R/B/O |
NT_010879 | AC099689 | 76721261 | 3 |   |   | AC021857 | 76438406 | | 17477 | 0 | 11734 | 29211 |
S/G/Y/R/B/O |
NT_010879 | AC099689 | 76721261 | 3 |   |   | AC093335 | 76438406 | | 45214 | 0 | 0 | 45214 |
S/G/Y/R/B/O |
NT_010879 | AC099689 | 76721261 | 3 |   |   | AC105184 | 76438406 | | 66838 | 0 | 3716 | 70554 |
S/G/Y/R/B/O |
NT_010879 | AC099689 | 76721261 | 3 |   |   | AP001403 | 76897339 | | 103935 | 1357 | 0 | 105292 |
S/G/Y/R/B/O |
NT_010879 | AC099689 | 76721261 | 3 |   |   | AP001852 | 76897339 | | 99927 | 20453 | 18269 | 138649 |
S/G/Y/R/B/O |
NT_010879 | AP001856 | 76875473 | 1 | chr18 | NT_010879 | AC125437 | 76897339 | 3 | 18250 | 1416 | 6271 | 25937 |
S/G/Y/R/B/O |
NT_010879 | AP001856 | 76875473 | 1 |   |   | AC021857 | 76875473 | | 31769 | 2708 | 12403 | 46880 |
S/G/Y/R/B/O |
NT_010879 | AP001856 | 76875473 | 1 |   |   | AC093335 | 76875473 | | 36680 | 0 | 11963 | 48643 |
S/G/Y/R/B/O |
NT_010879 | AP001856 | 76875473 | 1 |   |   | AC105184 | 76721261 | | 81727 | 3660 | 24314 | 109701 |
S/G/Y/R/B/O |
NT_010879 | AP001856 | 76875473 | 1 |   |   | AP001403 | 76897339 | | 87208 | 5782 | 27362 | 120352 |
S/G/Y/R/B/O |
NT_010879 | AP001856 | 76875473 | 1 |   |   | AP001852 | 76897339 | | 49091 | 14513 | 37667 | 101271 |
S/G/Y/R/B/O |
NT_010879 | AC125437 | 76897339 | 3 | chr18 | NT_010879 | AC104423 | 76966813 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010879 | AC125437 | 76897339 | 3 |   |   | AC105184 | 5520998 | | 29863 | 0 | 0 | 29863 |
S/G/Y/R/B/O |
NT_010879 | AC125437 | 76897339 | 3 |   |   | AC105184 | 5520998 | | 29863 | 0 | 0 | 29863 |
S/G/Y/R/B/O |
NT_010879 | AC125437 | 76897339 | 3 |   |   | AP001403 | 44652792 | | 11006 | 1487 | 31925 | 44418 |
S/G/Y/R/B/O |
NT_010879 | AC125437 | 76897339 | 3 |   |   | AP001403 | 44652792 | | 11006 | 1487 | 31925 | 44418 |
S/G/Y/R/B/O |
NT_010879 | AC104423 | 76966813 | 3 | chr18 | NT_010879 | AC023090 | 77132264 | 2 | 84447 | 0 | 0 | 84447 |
S/G/Y/R/B/O |
NT_010879 | AC104423 | 76966813 | 3 |   |   | AC044917 | 77132264 | | 42550 | 0 | 0 | 42550 |
S/G/Y/R/B/O |
NT_010879 | AC104423 | 76966813 | 3 |   |   | AC090755 | 77132264 | | 19818 | 2718 | 0 | 22536 |
S/G/Y/R/B/O |
NT_010879 | AC104423 | 76966813 | 3 |   |   | AP001839 | 77132264 | | 20079 | 1864 | 0 | 21943 |
S/G/Y/R/B/O |
NT_010879 | AC104423 | 76966813 | 3 |   |   | AP001908 | 77132264 | | 14318 | 6801 | 725 | 21844 |
S/G/Y/R/B/O |
NT_010879 | AC023090 | 77132264 | 2 | chr18 | NT_010879 | AC018445 | 77213016 | 1 | 14818 | 0 | 15451 | 30269 |
S/G/Y/R/B/O |
NT_010879 | AC023090 | 77132264 | 2 |   |   | AC044917 | 77213016 | | 119094 | 3216 | 1045 | 123355 |
S/G/Y/R/B/O |
NT_010879 | AC023090 | 77132264 | 2 |   |   | AC090755 | 77213016 | | 99271 | 2718 | 13964 | 115953 |
S/G/Y/R/B/O |
NT_010879 | AC023090 | 77132264 | 2 |   |   | AP001839 | 76966813 | | 76577 | 13289 | 10552 | 100418 |
S/G/Y/R/B/O |
NT_010879 | AC023090 | 77132264 | 2 |   |   | AP001908 | 76966813 | | 65438 | 21641 | 5832 | 92911 |
S/G/Y/R/B/O |
NT_010879 | AC018445 | 77213016 | 1 | chr18 | NT_010879 | AC068473 | 77377297 | 3 | 13470 | 0 | 0 | 13470 |
S/G/Y/R/B/O |
NT_010879 | AC018445 | 77213016 | 1 |   |   | AC044917 | 77132264 | | 23561 | 1632 | 11276 | 36469 |
S/G/Y/R/B/O |
NT_010879 | AC018445 | 77213016 | 1 |   |   | AC044917 | 77132264 | | 23561 | 1632 | 11276 | 36469 |
S/G/Y/R/B/O |
NT_010879 | AC018445 | 77213016 | 1 |   |   | AC090755 | 77377297 | | 22565 | 0 | 15259 | 37824 |
S/G/Y/R/B/O |
NT_010879 | AC018445 | 77213016 | 1 |   |   | AC090755 | 77377297 | | 22565 | 0 | 15259 | 37824 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 | chr18 | NT_010879 | AC021594 | 77492109 | 3 | 47428 | 0 | 0 | 47428 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 |   |   | AC013563 | 77377297 | | 45375 | 0 | 10214 | 55589 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 |   |   | AC013563 | 77377297 | | 45375 | 0 | 10214 | 55589 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 |   |   | AC079059 | 77492109 | | 39055 | 0 | 0 | 39055 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 |   |   | AC079059 | 77492109 | | 39055 | 0 | 0 | 39055 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 |   |   | AP001641 | 77492109 | | 36496 | 1540 | 11914 | 49950 |
S/G/Y/R/B/O |
NT_010879 | AC068473 | 77377297 | 3 |   |   | AP001641 | 77492109 | | 36496 | 1540 | 11914 | 49950 |
S/G/Y/R/B/O |
NT_010879 | AC021594 | 77492109 | 3 | chr18 | NT_010879 | AC114341 | 77654445 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010879 | AC021594 | 77492109 | 3 |   |   | AC079059 | 77377297 | | 145409 | 0 | 0 | 145409 |
S/G/Y/R/B/O |
NT_010879 | AC021594 | 77492109 | 3 |   |   | AP001641 | 77377297 | | 94495 | 7420 | 13069 | 114984 |
S/G/Y/R/B/O |
NT_010879 | AC114341 | 77654445 | 3 | chr18 | NT_010879 | AC090360 | 77752248 | 3 | 30833 | 0 | 0 | 30833 |
S/G/Y/R/B/O |
NT_010879 | AC114341 | 77654445 | 3 |   |   | AC010958 | 77377297 | | 58701 | 0 | 0 | 58701 |
S/G/Y/R/B/O |
NT_010879 | AC114341 | 77654445 | 3 |   |   | AC015668 | 77377297 | | 72868 | 0 | 17253 | 90121 |
S/G/Y/R/B/O |
NT_010879 | AC114341 | 77654445 | 3 |   |   | AC079059 | 77377297 | | 33217 | 0 | 0 | 33217 |
S/G/Y/R/B/O |
NT_010879 | AC114341 | 77654445 | 3 |   |   | AP001641 | 77752248 | | 12470 | 2784 | 1496 | 16750 |
S/G/Y/R/B/O |
NT_010879 | AC090360 | 77752248 | 3 | chr18 | NT_010879 | AC127503 | 77929303 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010879 | AC090360 | 77752248 | 3 |   |   | AC010958 | 77752248 | | 31202 | 0 | 0 | 31202 |
S/G/Y/R/B/O |
NT_010879 | AC090360 | 77752248 | 3 |   |   | AC015668 | 77752248 | | 13315 | 0 | 17557 | 30872 |
S/G/Y/R/B/O |
NT_010879 | AC090360 | 77752248 | 3 |   |   | AC018747 | 77752248 | | 29935 | 1721 | 13818 | 45474 |
S/G/Y/R/B/O |
NT_010879 | AC090360 | 77752248 | 3 |   |   | AP001522 | 77654445 | | 40514 | 6954 | 9364 | 56832 |
S/G/Y/R/B/O |
NT_010879 | AC127503 | 77929303 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010879 | AC127503 | 77929303 | 3 |   |   | AC068530 | 77654445 | | 134436 | 0 | 0 | 134436 |
S/G/Y/R/B/O |
NT_010879 | AC127503 | 77929303 | 3 |   |   | AC131043 | 77654445 | | 51171 | 0 | 0 | 51171 |
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