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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_011059 | AC091135 | 52111774 | 3 | chr18 | NT_011059 | AC100776 | 52277981 | 3 | 30731 | 0 | 0 | 30731 |
S/G/Y/R/B/O |
NT_011059 | AC091135 | 52111774 | 3 |   |   | AC018876 | 65480991 | | 70110 | 0 | 59796 | 129906 |
S/G/Y/R/B/O |
NT_011059 | AC100776 | 52277981 | 3 | chr18 | NT_011059 | AC007673 | 52314790 | 3 | 24935 | 0 | 0 | 24935 |
S/G/Y/R/B/O |
NT_011059 | AC007673 | 52314790 | 3 | chr18 | NT_011059 | AC098848 | 52453732 | 3 | 3285 | 0 | 0 | 3285 |
S/G/Y/R/B/O |
NT_011059 | AC098848 | 52453732 | 3 | chr18 | NT_011059 | AC103667 | 52639762 | 3 | 24288 | 0 | 0 | 24288 |
S/G/Y/R/B/O |
NT_011059 | AC098848 | 52453732 | 3 |   |   | AP001910 | 52639762 | | 127252 | 10297 | 25479 | 163028 |
S/G/Y/R/B/O |
NT_011059 | AC103667 | 52639762 | 3 | chr18 | NT_011059 | AC091103 | 52684467 | 3 | 3919 | 0 | 0 | 3919 |
S/G/Y/R/B/O |
NT_011059 | AC103667 | 52639762 | 3 |   |   | AP001910 | 52453732 | | 14301 | 5108 | 0 | 19409 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 | chr18 | NT_011059 | AC013587 | 52884888 | 3 | 19287 | 0 | 0 | 19287 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AC073440 | 52884888 | | 29471 | 2004 | 100687 | 132162 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AC090405 | 52884888 | | 149466 | 0 | 0 | 149466 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AC091111 | 52884888 | | 174643 | 0 | 0 | 174643 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AP001399 | 52639762 | | 93589 | 2283 | 78514 | 174386 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AP001493 | 52639762 | | 84569 | 8929 | 11748 | 105246 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AP001544 | 52639762 | | 111557 | 0 | 3230 | 114787 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AP001548 | 52639762 | | 123120 | 9488 | 1089 | 133697 |
S/G/Y/R/B/O |
NT_011059 | AC091103 | 52684467 | 3 |   |   | AP002896 | 52639762 | | 143709 | 16451 | 11579 | 171739 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 | chr18 | NT_011059 | AC090684 | 52994355 | 3 | 22327 | 0 | 0 | 22327 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AC090405 | 52639762 | | 32096 | 0 | 200 | 32296 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AC091111 | 52684467 | | 19288 | 0 | 0 | 19288 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AP001399 | 52684467 | | 13211 | 3767 | 1201 | 18179 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AP001493 | 52684467 | | 24339 | 4311 | 1481 | 30131 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AP001544 | 52684467 | | 84928 | 3881 | 0 | 88809 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AP001548 | 52684467 | | 15698 | 0 | 1760 | 17458 |
S/G/Y/R/B/O |
NT_011059 | AC013587 | 52884888 | 3 |   |   | AP002896 | 52684467 | | 13110 | 0 | 1319 | 14429 |
S/G/Y/R/B/O |
NT_011059 | AC090684 | 52994355 | 3 | chr18 | NT_011059 | AC018994 | 53049107 | 3 | 0 | 0 | 32391 | 32391 |
S/G/Y/R/B/O |
NT_011059 | AC018994 | 53049107 | 3 | chr18 | NT_011059 | AC090383 | 53182741 | 3 | 24510 | 0 | 0 | 24510 |
S/G/Y/R/B/O |
NT_011059 | AC018994 | 53049107 | 3 |   |   | AC090346 | 53049107 | | 117642 | 0 | 0 | 117642 |
S/G/Y/R/B/O |
NT_011059 | AC018994 | 53049107 | 3 |   |   | AP001373 | 52994355 | | 40330 | 4538 | 5164 | 50032 |
S/G/Y/R/B/O |
NT_011059 | AC018994 | 53049107 | 3 |   |   | AP001457 | 52994355 | | 74229 | 2810 | 26937 | 103976 |
S/G/Y/R/B/O |
NT_011059 | AC090383 | 53182741 | 3 | chr18 | NT_011059 | AC022031 | 53251235 | 3 | 53963 | 0 | 0 | 53963 |
S/G/Y/R/B/O |
NT_011059 | AC090383 | 53182741 | 3 |   |   | AC090346 | 53251235 | | 51438 | 0 | 0 | 51438 |
S/G/Y/R/B/O |
NT_011059 | AC090383 | 53182741 | 3 |   |   | AP001373 | 53251235 | | 60322 | 6832 | 9102 | 76256 |
S/G/Y/R/B/O |
NT_011059 | AC090383 | 53182741 | 3 |   |   | AP001457 | 53251235 | | 68044 | 2704 | 0 | 70748 |
S/G/Y/R/B/O |
NT_011059 | AC022031 | 53251235 | 3 | chr18 | NT_011059 | AC027584 | 53399758 | 3 | 32642 | 0 | 0 | 32642 |
S/G/Y/R/B/O |
NT_011059 | AC022031 | 53251235 | 3 |   |   | AC007859 | 53251235 | | 147478 | 0 | 0 | 147478 |
S/G/Y/R/B/O |
NT_011059 | AC022031 | 53251235 | 3 |   |   | AC090346 | 53399758 | | 17983 | 0 | 0 | 17983 |
S/G/Y/R/B/O |
NT_011059 | AC022031 | 53251235 | 3 |   |   | AP001373 | 53182741 | | 35831 | 6819 | 0 | 42650 |
S/G/Y/R/B/O |
NT_011059 | AC022031 | 53251235 | 3 |   |   | AP001457 | 53182741 | | 58632 | 0 | 4774 | 63406 |
S/G/Y/R/B/O |
NT_011059 | AC027584 | 53399758 | 3 | chr18 | NT_011059 | AC009271 | 53511074 | 3 | 17434 | 0 | 0 | 17434 |
S/G/Y/R/B/O |
NT_011059 | AC009271 | 53511074 | 3 | chr18 | NT_011059 | AC006305 | 53621747 | 3 | 7892 | 0 | 0 | 7892 |
S/G/Y/R/B/O |
NT_011059 | AC009271 | 53511074 | 3 |   |   | AC026007 | 53621747 | | 116383 | 0 | 0 | 116383 |
S/G/Y/R/B/O |
NT_011059 | AC006305 | 53621747 | 3 | chr18 | NT_011059 | AC006961 | 53792120 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_011059 | AC006305 | 53621747 | 3 |   |   | AC016165 | 53511074 | | 74852 | 0 | 0 | 74852 |
S/G/Y/R/B/O |
NT_011059 | AC006305 | 53621747 | 3 |   |   | AC090758 | 53511074 | | 125380 | 0 | 0 | 125380 |
S/G/Y/R/B/O |
NT_011059 | AC006305 | 53621747 | 3 |   |   | AP001909 | 53511074 | | 80980 | 8474 | 0 | 89454 |
S/G/Y/R/B/O |
NT_011059 | AC006305 | 53621747 | 3 |   |   | AP002786 | 53511074 | | 177020 | 0 | 0 | 177020 |
S/G/Y/R/B/O |
NT_011059 | AC006961 | 53792120 | 3 | chr18 | NT_011059 | AC027588 | 53961539 | 3 | 47376 | 0 | 0 | 47376 |
S/G/Y/R/B/O |
NT_011059 | AC006961 | 53792120 | 3 |   |   | AC021373 | 53621747 | | 36647 | 0 | 0 | 36647 |
S/G/Y/R/B/O |
NT_011059 | AC006961 | 53792120 | 3 |   |   | AC025506 | 53621747 | | 36705 | 1659 | 0 | 38364 |
S/G/Y/R/B/O |
NT_011059 | AC006961 | 53792120 | 3 |   |   | AC027081 | 53621747 | | 14629 | 2877 | 110454 | 127960 |
S/G/Y/R/B/O |
NT_011059 | AC006961 | 53792120 | 3 |   |   | AP001909 | 53961539 | | 47467 | 9954 | 3035 | 60456 |
S/G/Y/R/B/O |
NT_011059 | AC006961 | 53792120 | 3 |   |   | AP002786 | 53961539 | | 19959 | 4953 | 673 | 25585 |
S/G/Y/R/B/O |
NT_011059 | AC027588 | 53961539 | 3 | chr18 | NT_011059 | AC007052 | 54094642 | 3 | 4921 | 0 | 0 | 4921 |
S/G/Y/R/B/O |
NT_011059 | AC027588 | 53961539 | 3 |   |   | AC021373 | 54094642 | | 119669 | 0 | 0 | 119669 |
S/G/Y/R/B/O |
NT_011059 | AC027588 | 53961539 | 3 |   |   | AC025506 | 54094642 | | 36118 | 0 | 914 | 37032 |
S/G/Y/R/B/O |
NT_011059 | AC027588 | 53961539 | 3 |   |   | AC087535 | 54094642 | | 83424 | 2811 | 796 | 87031 |
S/G/Y/R/B/O |
NT_011059 | AC027588 | 53961539 | 3 |   |   | AP001592 | 54094642 | | 25904 | 0 | 62206 | 88110 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 | chr18 | NT_011059 | AC008006 | 54269444 | 3 | 12478 | 0 | 0 | 12478 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AC087535 | 53961539 | | 89985 | 1884 | 20984 | 112853 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AC087678 | 53961539 | | 162427 | 0 | 0 | 162427 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AC090230 | 53961539 | | 88054 | 0 | 15267 | 103321 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AC090408 | 53961539 | | 72413 | 4430 | 13476 | 90319 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AP001569 | 53961539 | | 80796 | 10928 | 15345 | 107069 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AP001592 | 53961539 | | 34105 | 0 | 18883 | 52988 |
S/G/Y/R/B/O |
NT_011059 | AC007052 | 54094642 | 3 |   |   | AP002424 | 53961539 | | 47323 | 4453 | 39741 | 91517 |
S/G/Y/R/B/O |
NT_011059 | AC008006 | 54269444 | 3 | chr18 | NT_011059 | AC012301 | 54421042 | 3 | 13121 | 0 | 0 | 13121 |
S/G/Y/R/B/O |
NT_011059 | AC008006 | 54269444 | 3 |   |   | AC087678 | 54421042 | | 20609 | 0 | 0 | 20609 |
S/G/Y/R/B/O |
NT_011059 | AC008006 | 54269444 | 3 |   |   | AC090230 | 54421042 | | 58455 | 1626 | 5953 | 66034 |
S/G/Y/R/B/O |
NT_011059 | AC008006 | 54269444 | 3 |   |   | AP002424 | 54421042 | | 14048 | 0 | 0 | 14048 |
S/G/Y/R/B/O |
NT_011059 | AC012301 | 54421042 | 3 | chr18 | NT_011059 | AC100775 | 54619380 | 3 | 0 | 1469 | 0 | 1469 |
S/G/Y/R/B/O |
NT_011059 | AC012301 | 54421042 | 3 |   |   | AC090296 | 54269444 | | 50940 | 0 | 0 | 50940 |
S/G/Y/R/B/O |
NT_011059 | AC012301 | 54421042 | 3 |   |   | AP001446 | 54619380 | | 113101 | 0 | 0 | 113101 |
S/G/Y/R/B/O |
NT_011059 | AC100775 | 54619380 | 3 | chr18 | NT_011059 | AC090208 | 54793178 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_011059 | AC100775 | 54619380 | 3 |   |   | AC007628 | 54619380 | | 34808 | 0 | 0 | 34808 |
S/G/Y/R/B/O |
NT_011059 | AC100775 | 54619380 | 3 |   |   | AC090296 | 54421042 | | 40181 | 2010 | 0 | 42191 |
S/G/Y/R/B/O |
NT_011059 | AC100775 | 54619380 | 3 |   |   | AP001772 | 54421042 | | 11697 | 11069 | 11611 | 34377 |
S/G/Y/R/B/O |
NT_011059 | AC090208 | 54793178 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_011059 | AC090208 | 54793178 | 3 | chr18 | NT_033907 | AC003971 | 54963896 | 3 | 61924 | 0 | 0 | 61924 |
S/G/Y/R/B/O |
NT_011059 | AC090208 | 54793178 | 3 | chr18 | NT_033907 | AC090340 | 55051870 | 3 | 44100 | 0 | 0 | 44100 |
S/G/Y/R/B/O |
NT_011059 | AC090208 | 54793178 | 3 |   |   | AC084350 | 54963896 | | 19856 | 0 | 3097 | 22953 |
S/G/Y/R/B/O |
NT_011059 | AC090208 | 54793178 | 3 |   |   | AP001560 | 55051870 | | 38638 | 2702 | 0 | 41340 |
S/G/Y/R/B/O |
NT_011059 | AC090208 | 54793178 | 3 |   |   | AP001772 | 55051870 | | 88419 | 23084 | 33325 | 144828 |
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