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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 | chr7 | NT_029998 | AC097645 | 22221 | 3 | 23250 | 0 | 0 | 23250 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 27352 | 0 | 0 | 27352 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 27352 | 0 | 0 | 27352 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 | chr7 | NT_029998 | AC097646 | 33144 | 3 | 12327 | 0 | 0 | 12327 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 12109 | 2337 | 13789 | 28235 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 | chr1 | NT_034471 | AL627309 | 366972 | 3 | 41644 | 0 | 0 | 41644 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 |   |   | AC073135 | 146318 | | 30675 | 0 | 0 | 30675 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 |   |   | AC090118 | 241897624 | | 27362 | 0 | 0 | 27362 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 |   |   | AC099546 | 33144 | | 21149 | 0 | 0 | 21149 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 |   |   | AC112517 | 240006283 | | 33128 | 0 | 0 | 33128 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 |   |   | AF198096 | 91111170 | | 11640 | 0 | 0 | 11640 |
S/G/Y/R/B/O |
NT_029998 | AC097647 | 1 | 3 |   |   | AL359496 | 181483764 | | 29156 | 0 | 4675 | 33831 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr7 | NT_029998 | AC097646 | 33144 | 3 | 30649 | 0 | 0 | 30649 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 33465 | 0 | 0 | 33465 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 33465 | 0 | 0 | 33465 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr11 | NT_037764 | AC069287 | 50001 | 3 | 40458 | 0 | 0 | 40458 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr1 | NT_034471 | AL627309 | 366972 | 3 | 37735 | 0 | 0 | 37735 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr1 | NT_034471 | AL669831 | 187305 | 3 | 40130 | 0 | 0 | 40130 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 14704 | 0 | 0 | 14704 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 14704 | 0 | 0 | 14704 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 |   |   | AC073135 | 50001 | | 40048 | 0 | 0 | 40048 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 |   |   | AC090118 | 50001 | | 33471 | 0 | 0 | 33471 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 |   |   | AC099546 | 167413 | | 39471 | 0 | 0 | 39471 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 |   |   | AC112517 | 240006283 | | 31763 | 0 | 0 | 31763 |
S/G/Y/R/B/O |
NT_029998 | AC097645 | 22221 | 3 |   |   | AL359496 | 45001 | | 37928 | 0 | 0 | 37928 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr7 | NT_029998 | AC093686 | 72471 | 3 | 3631 | 0 | 0 | 3631 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 23854 | 0 | 0 | 23854 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 23854 | 0 | 0 | 23854 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr11 | NT_037764 | AC069287 | 50001 | 3 | 42382 | 0 | 0 | 42382 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr7 | NT_029998 | AC097647 | 1 | 3 | 12327 | 0 | 0 | 12327 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 40423 | 0 | 0 | 40423 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 | chr16 | NT_010542 | AC133919 | 91111170 | 1 | 14326 | 0 | 6260 | 20586 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AC073135 | 50001 | | 42572 | 0 | 0 | 42572 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AC090118 | 50001 | | 23835 | 0 | 0 | 23835 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AC099546 | 167413 | | 37529 | 0 | 0 | 37529 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AC112517 | 240006283 | | 20840 | 0 | 0 | 20840 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AC134969 | 91111170 | | 17014 | 0 | 4438 | 21452 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AC134969 | 91111170 | | 17014 | 0 | 4438 | 21452 |
S/G/Y/R/B/O |
NT_029998 | AC097646 | 33144 | 3 |   |   | AL359496 | 181483764 | | 28326 | 0 | 0 | 28326 |
S/G/Y/R/B/O |
NT_029998 | AC093686 | 72471 | 3 | chr7 | NT_029998 | AC093666 | 106509 | 3 | 154713 | 0 | 0 | 154713 |
S/G/Y/R/B/O |
NT_029998 | AC093686 | 72471 | 3 | chr7 | NT_029998 | AC093627 | 119434 | 3 | 178265 | 0 | 0 | 178265 |
S/G/Y/R/B/O |
NT_029998 | AC093686 | 72471 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 17334 | 0 | 1713 | 19047 |
S/G/Y/R/B/O |
NT_029998 | AC093686 | 72471 | 3 |   |   | AC093614 | 1 | | 68586 | 0 | 0 | 68586 |
S/G/Y/R/B/O |
NT_029998 | AC093666 | 106509 | 3 | chr7 | NT_029998 | AC093627 | 119434 | 3 | 144891 | 0 | 0 | 144891 |
S/G/Y/R/B/O |
NT_029998 | AC093666 | 106509 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 17205 | 0 | 1714 | 18919 |
S/G/Y/R/B/O |
NT_029998 | AC093666 | 106509 | 3 |   |   | AC093614 | 29088414 | | 68718 | 0 | 0 | 68718 |
S/G/Y/R/B/O |
NT_029998 | AC093627 | 119434 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_029998 | AC093627 | 119434 | 3 | chr7 | NT_029998 | AC093686 | 72471 | 3 | 178265 | 0 | 0 | 178265 |
S/G/Y/R/B/O |
NT_029998 | AC093627 | 119434 | 3 |   |   | AC093614 | 29088414 | | 68750 | 0 | 0 | 68750 |
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