Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_034471

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_034471	AC114498	153750	1	0	0	15591	15591
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr19	NT_025920	AC010507	146318	3	19039	0	0	19039
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr19	NT_025920	AC010507	146318	3	19039	0	0	19039
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr19	NT_025920	AC010507	146318	3	19039	0	0	19039
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr19	NT_025920	AC010507	146318	3	19039	0	0	19039
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr11	NT_037764	AC069287	50001	3	76689	0	0	76689
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr11	NT_037764	AC069287	50001	3	76689	0	0	76689
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr19	NT_025920	AC092299	118522	3	37165	0	0	37165
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr19	NT_025920	AC092299	118522	3	37165	0	0	37165
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr7	NT_029998	AC097645	22221	3	14704	0	0	14704
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr7	NT_029998	AC097645	22221	3	14704	0	0	14704
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_034471	AC115287	524206	1	14531	0	8938	23469
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_034471	AC115287	524206	1	14531	0	8938	23469
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr8	NT_037693	AC131281	1	2	95304	0	0	95304
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr8	NT_037693	AC131281	1	2	95304	0	0	95304
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr8	NT_037693	AC131281	1	2	95304	0	0	95304
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr8	NT_037693	AC131281	1	2	95304	0	0	95304
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr16	NT_010542	AC133919	91111170	1	18282	2513	1170	21965
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr16	NT_010542	AC133919	91111170	1	18282	2513	1170	21965
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr5	NT_037668	AL161615	181483764	1	13472	2297	6692	22461
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr5	NT_037668	AL161615	181483764	1	13472	2297	6692	22461
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_004525	AL365438	219641785	1	18198	0	16864	35062
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_004525	AL365438	219641785	1	18198	0	16864	35062
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_034471	AL669831	187305	3	38802	0	0	38802
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr1	NT_034471	AL669831	187305	3	38802	0	0	38802
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr6	NT_007583	AL731661	170616380	3	38109	0	0	38109
S/G/Y/R/B/O	NT_034471	AL732372	1	3	chr6	NT_007583	AL731661	170616380	3	38109	0	0	38109
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC010509	146318		18751	0	12846	31597
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC010509	146318		18751	0	12846	31597
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC055861	9022030		31539	0	1020	32559
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC055861	9022030		31539	0	1020	32559
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC073135	50001		22452	0	0	22452
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC073135	50001		22452	0	0	22452
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC090118	241897624		19035	0	0	19035
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC090118	241897624		19035	0	0	19035
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC099546	33144		11590	0	0	11590
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC099546	33144		11590	0	0	11590
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC112517	33144		24489	0	0	24489
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC112517	33144		24489	0	0	24489
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC125417	524206		14717	0	0	14717
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AC125417	524206		14717	0	0	14717
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AL359496	181483764		29323	0	4644	33967
S/G/Y/R/B/O	NT_034471	AL732372	1	3			AL359496	181483764		29323	0	4644	33967
S/G/Y/R/B/O	NT_034471	AC114498	153750	1	chr1	NT_034471	AL669831	187305	3	10097	0	0	10097
S/G/Y/R/B/O	NT_034471	AC114498	153750	1	chr8	NT_037693	AC004908	23084	3	21053	0	0	21053
S/G/Y/R/B/O	NT_034471	AC114498	153750	1	chr19	NT_025920	AC092299	118522	3	11660	0	0	11660
S/G/Y/R/B/O	NT_034471	AC114498	153750	1	chr5	NT_037668	AL161615	181483764	1	12669	0	0	12669
S/G/Y/R/B/O	NT_034471	AC114498	153750	1			AC055861	23084		28712	0	1015	29727
S/G/Y/R/B/O	NT_034471	AC114498	153750	1			AC125417	118522		37994	0	0	37994
S/G/Y/R/B/O	NT_034471	AC114498	153750	1			AC127532	118522		10815	0	28446	39261
S/G/Y/R/B/O	NT_034471	AC114498	153750	1			AC127532	118522		10815	0	28446	39261
S/G/Y/R/B/O	NT_034471	AC114498	153750	1			AL359496	181483764		68794	0	0	68794
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr1	NT_034471	AL627309	366972	3	0	0	0	0
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr19	NT_025920	AC010507	146318	3	37864	0	0	37864
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr19	NT_025920	AC010507	146318	3	37864	0	0	37864
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr19	NT_025920	AC092192	101199	3	10052	0	0	10052
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr19	NT_025920	AC092299	118522	3	35457	0	0	35457
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr7	NT_029998	AC097645	22221	3	40130	0	0	40130
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr1	NT_034471	AC115287	524206	1	45565	0	2344	47909
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr17	NT_024972	AC129894	1	1	44797	0	0	44797
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr8	NT_037693	AC131281	1	2	16682	0	0	16682
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr8	NT_037693	AC131281	1	2	16682	0	0	16682
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr16	NT_010542	AC133919	91111170	1	28872	0	8569	37441
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr5	NT_037668	AL161615	181483764	1	13742	2292	7914	23948
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr1	NT_034471	AL732372	1	3	38802	0	0	38802
S/G/Y/R/B/O	NT_034471	AL669831	187305	3	chr1	NT_034471	AL732372	1	3	38802	0	0	38802
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AC000386	1		59744	0	0	59744
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AC090118	241897624		37854	0	0	37854
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AC099546	167413		43798	0	0	43798
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AC112517	240006283		40154	0	0	40154
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AF198096	91111170		117150	0	0	117150
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AF276983	91111170		35040	0	811	35851
S/G/Y/R/B/O	NT_034471	AL669831	187305	3			AL359496	45001		65277	4344	4641	74262
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr1	NT_034471	AC115287	524206	1	25025	2344	0	27369
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr8	NT_037693	AC004908	23084	3	29511	0	0	29511
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr19	NT_025920	AC008993	1	3	38459	0	0	38459
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr19	NT_025920	AC010507	146318	3	35345	0	0	35345
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr19	NT_025920	AC010507	146318	3	35345	0	0	35345
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr7	NT_029998	AC097645	22221	3	37735	0	0	37735
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr7	NT_029998	AC097647	1	3	41644	0	0	41644
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr17	NT_024972	AC129894	1	1	41529	0	1601	43130
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr16	NT_010542	AC133919	91111170	1	13627	2491	18225	34343
S/G/Y/R/B/O	NT_034471	AL627309	366972	3	chr6	NT_034880	AL353654	45001	3	41924	0	0	41924
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC005604	23084		40953	0	0	40953
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC073135	173193		54109	0	0	54109
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC090118	241897624		35333	0	0	35333
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC099546	167413		41489	0	0	41489
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC112517	240006283		37731	0	0	37731
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC134969	91111170		17008	0	1609	18617
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AC134969	91111170		17008	0	1609	18617
S/G/Y/R/B/O	NT_034471	AL627309	366972	3			AL359496	45001		41783	0	4685	46468
S/G/Y/R/B/O	NT_034471	AC115287	524206	1
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr19	NT_025920	AC010507	146318	3	14816	0	28040	42856
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr19	NT_025920	AC010507	146318	3	14816	0	28040	42856
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr16	NT_037887	AC010552	12001	3	17351	0	1105	18456
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr11	NT_037764	AC069287	50001	3	54383	0	5165	59548
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr19	NT_025920	AC092299	118522	3	16417	2379	6888	25684
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr7	NT_029998	AC093666	106509	3	17205	0	1714	18919
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr7	NT_029998	AC093686	72471	3	17334	0	1713	19047
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr7	NT_029998	AC097646	33144	3	40423	0	0	40423
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr7	NT_029998	AC097647	1	3	12109	2337	13789	28235
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr17	NT_024972	AC129894	1	1	42215	0	6574	48789
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr16	NT_010542	AC133919	91111170	1	25417	0	10219	35636
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr1	NT_034471	AL669831	187305	3	45565	0	2344	47909
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr1	NT_034471	AL732372	1	3	14531	0	8938	23469
S/G/Y/R/B/O	NT_034471	AC115287	524206	1	chr1	NT_034471	AL732372	1	3	14531	0	8938	23469
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AC073135	50001		45210	5794	33051	84055
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AC090118	241897624		40363	0	0	40363
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AC099546	167413		30088	1912	8393	40393
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AC112517	240006283		12109	2337	22446	36892
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AC134969	241931491		33254	0	3541	36795
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AC134969	241931491		33254	0	3541	36795
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AF198096	29088414		28609	460	9466	38535
S/G/Y/R/B/O	NT_034471	AC115287	524206	1			AL359496	45001		44417	0	4770	49187