Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_029865

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029865	AC096535	59089804	1	chr1	NT_029865	AL035416	59130080	3	15974	0	23949	39923
S/G/Y/R/B/O	NT_029865	AC096535	59089804	1			AC068202	58849941		32068	4131	12115	48314
S/G/Y/R/B/O	NT_029865	AL035416	59130080	3	chr1	NT_029865	AC113175	59254005	3	34126	0	0	34126
S/G/Y/R/B/O	NT_029865	AL035416	59130080	3			AC068202	59130080		43367	4129	0	47496
S/G/Y/R/B/O	NT_029865	AC113175	59254005	3	chr1	NT_029865	AL445285	59347505	3	0	0	96	96
S/G/Y/R/B/O	NT_029865	AC113175	59254005	3			AC009678	59254005		32580	0	7817	40397
S/G/Y/R/B/O	NT_029865	AC113175	59254005	3			AC068202	59254005		67397	2328	1382	71107
S/G/Y/R/B/O	NT_029865	AL445285	59347505	3	chr1	NT_029865	AC097066	59377245	3	0	0	100	100
S/G/Y/R/B/O	NT_029865	AL445285	59347505	3			AC009678	59347505		28675	0	0	28675
S/G/Y/R/B/O	NT_029865	AC097066	59377245	3	chr1	NT_029865	AL603765	59545831	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AC097066	59377245	3			AC009678	59254005		36796	1583	43761	82140
S/G/Y/R/B/O	NT_029865	AC097066	59377245	3			AC021913	59254005		62922	0	0	62922
S/G/Y/R/B/O	NT_029865	AC097066	59377245	3			AL356572	59254005		130679	2574	12846	146099
S/G/Y/R/B/O	NT_029865	AL603765	59545831	3	chr1	NT_029865	AL355808	59701327	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL603765	59545831	3			AC008823	59545831		33985	0	17310	51295
S/G/Y/R/B/O	NT_029865	AL603765	59545831	3			AC021913	59545831		43007	0	78351	121358
S/G/Y/R/B/O	NT_029865	AL603765	59545831	3			AC026608	59545831		39344	0	1138	40482
S/G/Y/R/B/O	NT_029865	AL355808	59701327	3	chr1	NT_029865	AL603844	59703321	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL603844	59703321	3	chr1	NT_029865	AL606803	59921506	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL603844	59703321	3			AC026608	59377245		70933	8254	5147	84334
S/G/Y/R/B/O	NT_029865	AL606803	59921506	3	chr1	NT_029865	AC105276	59973545	3	0	1994	0	1994
S/G/Y/R/B/O	NT_029865	AL606803	59921506	3			AC021696	59921506		14487	0	0	14487
S/G/Y/R/B/O	NT_029865	AC105276	59973545	3	chr1	NT_029865	AC099792	60047438	3	23506	0	0	23506
S/G/Y/R/B/O	NT_029865	AC105276	59973545	3			AC021696	59703321		50440	2769	14954	68163
S/G/Y/R/B/O	NT_029865	AC105276	59973545	3			AL161641	212095994		83606	0	0	83606
S/G/Y/R/B/O	NT_029865	AC099792	60047438	3	chr1	NT_029865	AL355795	60254681	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AC099792	60047438	3			AC016857	59921506		31875	2873	5818	40566
S/G/Y/R/B/O	NT_029865	AC099792	60047438	3			AC021696	59921506		25152	5190	6230	36572
S/G/Y/R/B/O	NT_029865	AC099792	60047438	3			AC058796	59921506		118930	0	31594	150524
S/G/Y/R/B/O	NT_029865	AC099792	60047438	3			AL161641	59973545		21110	0	0	21110
S/G/Y/R/B/O	NT_029865	AL355795	60254681	3	chr1	NT_029865	AC096534	60341729	3	46590	0	0	46590
S/G/Y/R/B/O	NT_029865	AL355795	60254681	3			AC016857	59973545		110399	6863	3026	120288
S/G/Y/R/B/O	NT_029865	AL355795	60254681	3			AC058796	59973545		49144	2785	6542	58471
S/G/Y/R/B/O	NT_029865	AC096534	60341729	3	chr1	NT_029865	AL445432	60490342	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AC096534	60341729	3			AC016857	60341729		43229	2788	0	46017
S/G/Y/R/B/O	NT_029865	AC096534	60341729	3			AC026025	60341729		107561	0	11603	119164
S/G/Y/R/B/O	NT_029865	AC096534	60341729	3			AL390054	60254681		72540	14106	15758	102404
S/G/Y/R/B/O	NT_029865	AL445432	60490342	3	chr1	NT_029865	AC096947	60495065	3	0	0	100	100
S/G/Y/R/B/O	NT_029865	AC096947	60495065	3	chr1	NT_029865	AC092784	60643695	3	48887	0	0	48887
S/G/Y/R/B/O	NT_029865	AC096947	60495065	3			AL356112	60643695		131364	0	0	131364
S/G/Y/R/B/O	NT_029865	AC092784	60643695	3	chr1	NT_029865	AL445198	60712336	3	59537	0	0	59537
S/G/Y/R/B/O	NT_029865	AC092784	60643695	3			AL356112	60495065		71774	0	0	71774
S/G/Y/R/B/O	NT_029865	AL445198	60712336	3	chr1	NT_029865	AL096888	60731134	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL445198	60712336	3			AL356112	60643695		13760	0	0	13760
S/G/Y/R/B/O	NT_029865	AL096888	60731134	3	chr1	NT_029865	AL590393	60854425	3	0	1996	0	1996
S/G/Y/R/B/O	NT_029865	AL590393	60854425	3	chr1	NT_029865	AC099791	60893291	3	0	1986	0	1986
S/G/Y/R/B/O	NT_029865	AC099791	60893291	3	chr1	NT_029865	AC097064	61071680	3	59196	0	0	59196
S/G/Y/R/B/O	NT_029865	AC099791	60893291	3			AC025691	60731134		82097	0	24537	106634
S/G/Y/R/B/O	NT_029865	AC097064	61071680	3	chr1	NT_029865	AL449143	61255105	3	58490	0	0	58490
S/G/Y/R/B/O	NT_029865	AC097064	61071680	3			AC025691	60854425		58988	0	17745	76733
S/G/Y/R/B/O	NT_029865	AC097064	61071680	3			AL357145	60893291		50798	2452	3683	56933
S/G/Y/R/B/O	NT_029865	AL449143	61255105	3	chr1	NT_029865	AL353802	61281695	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL449143	61255105	3			AL357145	61071680		23583	0	0	23583
S/G/Y/R/B/O	NT_029865	AL353802	61281695	3	chr1	NT_029865	AL590374	61424821	3	0	1933	0	1933
S/G/Y/R/B/O	NT_029865	AL590374	61424821	3	chr1	NT_029865	AL136458	61432596	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029865	AL136458	61432596	3	chr1	NT_029865	AL162739	61559322	3	0	1990	0	1990
S/G/Y/R/B/O	NT_029865	AL136458	61432596	3			AC090170	61281695		96077	0	33067	129144
S/G/Y/R/B/O	NT_029865	AL162739	61559322	3	chr1	NT_029865	AL139343	61641323	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL139343	61641323	3	chr1	NT_029865	AC096946	61784141	3	70429	0	0	70429
S/G/Y/R/B/O	NT_029865	AL139343	61641323	3			AC044779	61641323		20218	0	8355	28573
S/G/Y/R/B/O	NT_029865	AC096946	61784141	3	chr1	NT_029865	AL451044	61844897	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029865	AC096946	61784141	3			AL391257	61641323		11040	4915	0	15955
S/G/Y/R/B/O	NT_029865	AL451044	61844897	3	chr1	NT_029865	AL138847	61970266	3	0	1995	0	1995
S/G/Y/R/B/O	NT_029865	AL451044	61844897	3			AL391257	61970266		46284	7667	1866	55817
S/G/Y/R/B/O	NT_029865	AL138847	61970266	3	chr1	NT_029865	AC103923	62034940	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AC103923	62034940	3	chr1	NT_029865	AC119425	62218563	3	0	994	0	994
S/G/Y/R/B/O	NT_029865	AC119425	62218563	3	chr1	NT_029865	AC099794	62246974	3	6096	0	0	6096
S/G/Y/R/B/O	NT_029865	AC099794	62246974	3	chr1	NT_029865	AL162400	62375217	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL162400	62375217	3	chr1	NT_029865	AC096543	62491057	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL162400	62375217	3			AC026144	62375217		46693	2909	0	49602
S/G/Y/R/B/O	NT_029865	AC096543	62491057	3	chr1	NT_029865	AL138935	62651894	3	0	1996	0	1996
S/G/Y/R/B/O	NT_029865	AC096543	62491057	3			AC026144	62246974		60999	1686	9023	71708
S/G/Y/R/B/O	NT_029865	AL138935	62651894	3	chr1	NT_029865	AL049636	62661356	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL049636	62661356	3	chr1	NT_029865	AL592218	62802084	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL592218	62802084	3	chr1	NT_029865	AL591362	62839467	1	22386	0	0	22386
S/G/Y/R/B/O	NT_029865	AL591362	62839467	1	chr1	NT_029865	AL109925	62910270	3	72150	0	0	72150
S/G/Y/R/B/O	NT_029865	AL591362	62839467	1			AC027520	62839467		19263	2212	2906	24381
S/G/Y/R/B/O	NT_029865	AL109925	62910270	3	chr1	NT_029865	AL512663	63062853	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029865	AL109925	62910270	3			AC027520	62802084		93354	2210	4141	99705
S/G/Y/R/B/O	NT_029865	AL512663	63062853	3	chr1	NT_029865	AL161742	63136024	3	0	1995	0	1995
S/G/Y/R/B/O	NT_029865	AL512663	63062853	3			AC027520	62839467		47641	3595	2627	53863
S/G/Y/R/B/O	NT_029865	AL161742	63136024	3	chr1	NT_029865	AL353713	63248417	3	0	0	100	100
S/G/Y/R/B/O	NT_029865	AL161742	63136024	3			AC025544	63136024		65877	4595	37267	107739
S/G/Y/R/B/O	NT_029865	AL161742	63136024	3			AL356914	63248417		65984	5345	27566	98895
S/G/Y/R/B/O	NT_029865	AL353713	63248417	3	chr1	NT_029865	AL808029	63330971	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029865	AL353713	63248417	3			AC025544	63062853		67143	0	0	67143
S/G/Y/R/B/O	NT_029865	AL353713	63248417	3			AL356914	63136024		22287	0	0	22287
S/G/Y/R/B/O	NT_029865	AL353713	63248417	3			AL359769	63136024		46039	0	0	46039
S/G/Y/R/B/O	NT_029865	AL808029	63330971	3	chr1	NT_029865	AL137859	63355659	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029865	AL808029	63330971	3			AC018773	63330971		23716	0	0	23716
S/G/Y/R/B/O	NT_029865	AL808029	63330971	3			AL359769	63248417		26688	0	0	26688
S/G/Y/R/B/O	NT_029865	AL137859	63355659	3	chr1	NT_029865	AL808030	63450892	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029865	AL137859	63355659	3			AC018773	63248417		48599	2971	0	51570
S/G/Y/R/B/O	NT_029865	AL137859	63355659	3			AL359769	63248417		97063	0	0	97063
S/G/Y/R/B/O	NT_029865	AL808030	63450892	3	chr1	NT_029865	AL138793	63472230	3	0	1994	0	1994
S/G/Y/R/B/O	NT_029865	AL808030	63450892	3			AL359769	63472230		23338	0	0	23338
S/G/Y/R/B/O	NT_029865	AL138793	63472230	3	chr1	NT_029865	AL445205	63482871	3	0	1989	0	1989
S/G/Y/R/B/O	NT_029865	AL445205	63482871	3	chr1	NT_029865	AL161916	63596809	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL161916	63596809	3	chr1	NT_029865	AL592184	63695958	3	0	1993	0	1993
S/G/Y/R/B/O	NT_029865	AL592184	63695958	3	chr1	NT_029865	AL513044	63716209	3	0	2000	0	2000
S/G/Y/R/B/O	NT_029865	AL513044	63716209	3	chr1	NT_029865	AL355515	63826110	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029865	AL513044	63716209	3			AC060822	63716209		46905	2111	7095	56111
S/G/Y/R/B/O	NT_029865	AL513044	63716209	3			AC061976	63716209		60707	0	0	60707
S/G/Y/R/B/O	NT_029865	AL355515	63826110	3	chr1	NT_029865	AL590405	63929319	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029865	AL355515	63826110	3			AC012245	63695958		40178	3446	0	43624
S/G/Y/R/B/O	NT_029865	AL355515	63826110	3			AC061976	63695958		82343	6343	12586	101272
S/G/Y/R/B/O	NT_029865	AL590405	63929319	3	chr1	NT_029865	AC099678	64061110	3	0	1995	0	1995
S/G/Y/R/B/O	NT_029865	AL590405	63929319	3			AC012245	63929319		45530	2386	23477	71393
S/G/Y/R/B/O	NT_029865	AC099678	64061110	3	chr1	NT_029865	AC093427	64202600	3	0	0	53320	53320
S/G/Y/R/B/O	NT_029865	AC093427	64202600	3	chr1	NT_029865	AL590436	64280980	3	0	1993	0	1993
S/G/Y/R/B/O	NT_029865	AL590436	64280980	3	chr1	NT_029865	AL606517	64302197	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL590436	64280980	3			AC025866	64280980		18907	0	0	18907
S/G/Y/R/B/O	NT_029865	AL590436	64280980	3			AL354878	64202600		14974	0	5071	20045
S/G/Y/R/B/O	NT_029865	AL606517	64302197	3	chr1	NT_029865	AL357078	64374727	3	0	0	1620	1620
S/G/Y/R/B/O	NT_029865	AL606517	64302197	3			AC025866	64202600		47209	5244	0	52453
S/G/Y/R/B/O	NT_029865	AL357078	64374727	3	chr1	NT_029865	AC099680	64520324	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL357078	64374727	3			AC025866	64374727		34573	7322	9279	51174
S/G/Y/R/B/O	NT_029865	AC099680	64520324	3	chr1	NT_029865	AL356212	64607380	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029865	AL356212	64607380	3	chr1	NT_029865	AL139294	64636783	3	0	0	0	0
S/G/Y/R/B/O	NT_029865	AL139294	64636783	3	chr1	NT_029865	AL355487	64728297	3	0	0	100	100
S/G/Y/R/B/O	NT_029865	AL355487	64728297	3