Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004734

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004734	AL365366	237276732	3	chr1	NT_004734	AC092016	237420699	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004734	AL365366	237276732	3			AC004783	237122603		96448	0	0	96448
S/G/Y/R/B/O	NT_004734	AL365366	237276732	3			AC068598	237122603		16110	2193	0	18303
S/G/Y/R/B/O	NT_004734	AC092016	237420699	3	chr1	NT_004734	AL591686	237504784	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004734	AC092016	237420699	3			AC068598	237420699		18977	0	9762	28739
S/G/Y/R/B/O	NT_004734	AL591686	237504784	3	chr1	NT_004734	AL583845	237653464	3	0	0	1957	1957
S/G/Y/R/B/O	NT_004734	AL591686	237504784	3			AC012079	237504784		59289	4615	15776	79680
S/G/Y/R/B/O	NT_004734	AL591686	237504784	3			AC024501	237504784		109319	2451	0	111770
S/G/Y/R/B/O	NT_004734	AL591686	237504784	3			AC026828	237504784		58611	2387	0	60998
S/G/Y/R/B/O	NT_004734	AL591686	237504784	3			AL390999	237420699		65843	5262	11265	82370
S/G/Y/R/B/O	NT_004734	AL591686	237504784	3			AL513486	237420699		128820	0	0	128820
S/G/Y/R/B/O	NT_004734	AL583845	237653464	3	chr1	NT_004734	AL360271	237705618	3	0	0	1636	1636
S/G/Y/R/B/O	NT_004734	AL583845	237653464	3			AC012079	237653464		38286	0	0	38286
S/G/Y/R/B/O	NT_004734	AL583845	237653464	3			AC024501	237653464		11446	1997	0	13443
S/G/Y/R/B/O	NT_004734	AL583845	237653464	3			AC026828	237653464		38158	0	13653	51811
S/G/Y/R/B/O	NT_004734	AL583845	237653464	3			AL513486	237705618		38534	0	0	38534
S/G/Y/R/B/O	NT_004734	AL360271	237705618	3	chr1	NT_004734	AL445704	237800407	3	0	1954	0	1954
S/G/Y/R/B/O	NT_004734	AL360271	237705618	3			AC013371	237504784		96766	0	0	96766
S/G/Y/R/B/O	NT_004734	AL360271	237705618	3			AC026828	237504784		18119	6575	1031	25725
S/G/Y/R/B/O	NT_004734	AL445704	237800407	3	chr1	NT_004734	AC099785	237950863	3	0	0	0	0
S/G/Y/R/B/O	NT_004734	AL445704	237800407	3			AC013371	237653464		41050	0	0	41050
S/G/Y/R/B/O	NT_004734	AL445704	237800407	3			AC027068	237653464		116382	6277	5615	128274
S/G/Y/R/B/O	NT_004734	AC099785	237950863	3	chr1	NT_004734	AC118471	238137023	3	2994	0	0	2994
S/G/Y/R/B/O	NT_004734	AC099785	237950863	3			AC068565	237705618		95350	5065	18810	119225
S/G/Y/R/B/O	NT_004734	AC118471	238137023	3	chr1	NT_004734	AL445675	238193092	3	0	875	0	875
S/G/Y/R/B/O	NT_004734	AL445675	238193092	3	chr1	NT_004734	AL603825	238364201	3	0	0	1796	1796
S/G/Y/R/B/O	NT_004734	AL445675	238193092	3			AL512381	238137023		12278	4618	2123	19019
S/G/Y/R/B/O	NT_004734	AL445675	238193092	3			AL590679	238137023		112539	0	0	112539
S/G/Y/R/B/O	NT_004734	AL603825	238364201	3	chr1	NT_004734	AL606534	238397743	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004734	AL603825	238364201	3			AC005627	238364201		23714	0	1113	24827
S/G/Y/R/B/O	NT_004734	AL603825	238364201	3			AC005627	238364201		23714	0	1113	24827
S/G/Y/R/B/O	NT_004734	AL606534	238397743	3	chr1	NT_004734	AC092782	238579285	3	59317	0	0	59317
S/G/Y/R/B/O	NT_004734	AL606534	238397743	3			AC005627	238397743		119294	2530	36508	158332
S/G/Y/R/B/O	NT_004734	AL606534	238397743	3			AC005627	238397743		119294	2530	36508	158332
S/G/Y/R/B/O	NT_004734	AL606534	238397743	3			AC096972	238579285		119721	0	40781	160502
S/G/Y/R/B/O	NT_004734	AC092782	238579285	3	chr1	NT_004734	AC092806	238675248	3	46743	0	0	46743
S/G/Y/R/B/O	NT_004734	AC092782	238579285	3			AC096972	238675248		47416	0	0	47416
S/G/Y/R/B/O	NT_004734	AC092806	238675248	3	chr1	NT_004734	AC096539	238769260	3	12765	0	0	12765
S/G/Y/R/B/O	NT_004734	AC092806	238675248	3			AL391810	238769260		77701	0	0	77701
S/G/Y/R/B/O	NT_004734	AC096539	238769260	3	chr1	NT_004734	AL591721	238952567	3	0	0	0	0
S/G/Y/R/B/O	NT_004734	AL591721	238952567	3	chr1	NT_004734	AL662889	239033681	3	0	0	1330	1330
S/G/Y/R/B/O	NT_004734	AL591721	238952567	3			AC023843	238675248		23984	9463	12180	45627
S/G/Y/R/B/O	NT_004734	AL662889	239033681	3	chr1	NT_004734	AL592151	239158717	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004734	AL662889	239033681	3			AC023843	239033681		44611	4437	19778	68826
S/G/Y/R/B/O	NT_004734	AL592151	239158717	3	chr1	NT_004734	AL591885	239305062	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004734	AL592151	239158717	3			AC067778	239158717		17286	0	0	17286
S/G/Y/R/B/O	NT_004734	AL592151	239158717	3			AC080120	239158717		35040	0	0	35040
S/G/Y/R/B/O	NT_004734	AL591885	239305062	3	chr1	NT_004734	AL590483	239430724	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004734	AL591885	239305062	3			AC025342	239033681		66251	4655	14472	85378
S/G/Y/R/B/O	NT_004734	AL591885	239305062	3			AC026041	239033681		66667	0	0	66667
S/G/Y/R/B/O	NT_004734	AL591885	239305062	3			AC067778	239033681		88927	3498	7649	100074
S/G/Y/R/B/O	NT_004734	AL591885	239305062	3			AC080120	239033681		68955	0	0	68955
S/G/Y/R/B/O	NT_004734	AL590483	239430724	3	chr1	NT_004734	AL358177	239526952	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004734	AL590483	239430724	3			AC025342	239158717		54339	6511	14015	74865
S/G/Y/R/B/O	NT_004734	AL590483	239430724	3			AC026041	239158717		72262	2924	3346	78532
S/G/Y/R/B/O	NT_004734	AL358177	239526952	3	chr1	NT_004734	AL662915	239616154	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004734	AL662915	239616154	3	chr1	NT_004734	AL355475	239670083	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004734	AL355475	239670083	3	chr1	NT_004734	AL645465	239752790	3	0	1988	0	1988
S/G/Y/R/B/O	NT_004734	AL355475	239670083	3			AC021775	239526952		26898	2164	13510	42572
S/G/Y/R/B/O	NT_004734	AL355475	239670083	3			AL591168	239526952		46483	0	14278	60761
S/G/Y/R/B/O	NT_004734	AL645465	239752790	3	chr1	NT_004734	AL591594	239830932	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004734	AL645465	239752790	3			AC021775	239616154		39560	3665	10651	53876
S/G/Y/R/B/O	NT_004734	AL645465	239752790	3			AL591168	239670083		64430	2688	1896	69014
S/G/Y/R/B/O	NT_004734	AL591594	239830932	3	chr1	NT_004734	AC099757	239981225	3	0	0	0	0
S/G/Y/R/B/O	NT_004734	AL591594	239830932	3			AL590557	239830932		76001	0	0	76001
S/G/Y/R/B/O	NT_004734	AC099757	239981225	3	chr1	NT_004734	AL451007	240097654	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004734	AC099757	239981225	3			AL590557	240097654		26107	0	15740	41847
S/G/Y/R/B/O	NT_004734	AL451007	240097654	3	chr1	NT_004734	AC025690	240209845	1	22653	0	2535	25188
S/G/Y/R/B/O	NT_004734	AC025690	240209845	1	chr1	NT_004734	AC105911	240217945	2	75434	12471	36084	123989
S/G/Y/R/B/O	NT_004734	AC105911	240217945	2	chr1	NT_004734	AL606483	240348868	3	28406	0	0	28406
S/G/Y/R/B/O	NT_004734	AL606483	240348868	3	chr1	NT_004734	AL356512	240377305	3	0	0	0	0
S/G/Y/R/B/O	NT_004734	AL356512	240377305	3	chr1	NT_004734	AL589763	240449334	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004734	AL356512	240377305	3			AL356606	240217945		11742	2469	484	14695
S/G/Y/R/B/O	NT_004734	AL589763	240449334	3	chr1	NT_004734	AL592103	240612106	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004734	AL589763	240449334	3			AL356606	240377305		146791	0	0	146791
S/G/Y/R/B/O	NT_004734	AL592103	240612106	3	chr1	NT_004734	AL845334	240713126	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004734	AL592103	240612106	3			AC040165	240612106		53930	0	0	53930
S/G/Y/R/B/O	NT_004734	AL592103	240612106	3			AC040165	240612106		53930	0	0	53930
S/G/Y/R/B/O	NT_004734	AL592103	240612106	3			AL356606	240612106		14602	2081	0	16683
S/G/Y/R/B/O	NT_004734	AL592103	240612106	3			AL356606	240612106		14602	2081	0	16683
S/G/Y/R/B/O	NT_004734	AL845334	240713126	3	chr1	NT_004734	AL359983	240733295	3	0	0	1875	1875
S/G/Y/R/B/O	NT_004734	AL359983	240733295	3	chr1	NT_004734	AC093153	240897549	3	96247	0	0	96247
S/G/Y/R/B/O	NT_004734	AL359983	240733295	3			AC024493	240612106		87173	17452	40103	144728
S/G/Y/R/B/O	NT_004734	AL359983	240733295	3			AC040165	240612106		137557	0	0	137557
S/G/Y/R/B/O	NT_004734	AL359983	240733295	3			AL353172	240897549		116794	0	3247	120041
S/G/Y/R/B/O	NT_004734	AC093153	240897549	3	chr1	NT_004734	AC104462	240995464	3	23474	0	0	23474
S/G/Y/R/B/O	NT_004734	AC093153	240897549	3			AC024493	240713126		39150	9965	32598	81713
S/G/Y/R/B/O	NT_004734	AC093153	240897549	3			AC040165	240713126		67712	0	0	67712
S/G/Y/R/B/O	NT_004734	AC093153	240897549	3			AC068686	240713126		80919	4730	8619	94268
S/G/Y/R/B/O	NT_004734	AC093153	240897549	3			AL353172	240995464		98936	0	0	98936
S/G/Y/R/B/O	NT_004734	AC104462	240995464	3	chr1	NT_004734	AL512412	241155164	3	0	0	0	0
S/G/Y/R/B/O	NT_004734	AC104462	240995464	3			AC068686	240733295		72334	0	0	72334
S/G/Y/R/B/O	NT_004734	AL512412	241155164	3