Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_028050

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_028050	AC103593	98233626	1	chr1	NT_028050	AL627442	98251875	3	65399	5030	7740	78169
S/G/Y/R/B/O	NT_028050	AC103593	98233626	1			AC022907	98251875		12813	2480	8948	24241
S/G/Y/R/B/O	NT_028050	AC103593	98233626	1			AL451003	98251875		64973	9015	7553	81541
S/G/Y/R/B/O	NT_028050	AC103593	98233626	1			AL451003	98251875		64973	9015	7553	81541
S/G/Y/R/B/O	NT_028050	AL627442	98251875	3	chr1	NT_028050	AL590110	98383690	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL627442	98251875	3	chr1	NT_034392	AC095031	98143035	3	21493	0	0	21493
S/G/Y/R/B/O	NT_028050	AL627442	98251875	3			AC022907	98251875		16560	2768	2871	22199
S/G/Y/R/B/O	NT_028050	AL627442	98251875	3			AL451003	98233626		105168	1035	11244	117447
S/G/Y/R/B/O	NT_028050	AL627442	98251875	3			AL451003	98233626		105168	1035	11244	117447
S/G/Y/R/B/O	NT_028050	AL590110	98383690	3	chr1	NT_028050	AL161744	98510533	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL590110	98383690	3			AC022823	98383690		24354	2567	1673	28594
S/G/Y/R/B/O	NT_028050	AL590110	98383690	3			AC022907	98383690		52869	0	8058	60927
S/G/Y/R/B/O	NT_028050	AL161744	98510533	3	chr1	NT_028050	AL445433	98595720	3	0	0	100	100
S/G/Y/R/B/O	NT_028050	AL161744	98510533	3			AC020693	98251875		29403	2756	0	32159
S/G/Y/R/B/O	NT_028050	AL161744	98510533	3			AC022823	98251875		69804	10606	1109	81519
S/G/Y/R/B/O	NT_028050	AL445433	98595720	3	chr1	NT_028050	AL136147	98734538	3	0	0	100	100
S/G/Y/R/B/O	NT_028050	AL445433	98595720	3			AC020693	98383690		77551	0	0	77551
S/G/Y/R/B/O	NT_028050	AL445433	98595720	3			AC022823	98383690		21000	5733	5517	32250
S/G/Y/R/B/O	NT_028050	AL445433	98595720	3			AC027424	98383690		40928	7996	5700	54624
S/G/Y/R/B/O	NT_028050	AL445433	98595720	3			AL138797	98734538		24740	0	0	24740
S/G/Y/R/B/O	NT_028050	AL136147	98734538	3	chr1	NT_028050	AL139425	98885577	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL136147	98734538	3			AC020645	98510533		72250	0	0	72250
S/G/Y/R/B/O	NT_028050	AL136147	98734538	3			AC027424	98510533		38173	1617	1136	40926
S/G/Y/R/B/O	NT_028050	AL139425	98885577	3	chr1	NT_028050	AL365220	98952435	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028050	AL139425	98885577	3			AC020645	98595720		23185	0	0	23185
S/G/Y/R/B/O	NT_028050	AL365220	98952435	3	chr1	NT_028050	AL449063	99063463	3	0	0	100	100
S/G/Y/R/B/O	NT_028050	AL449063	99063463	3	chr1	NT_028050	AC093559	99188785	3	107486	0	0	107486
S/G/Y/R/B/O	NT_028050	AC093559	99188785	3	chr1	NT_028050	AC105270	99257208	3	0	0	56222	56222
S/G/Y/R/B/O	NT_028050	AC105270	99257208	3	chr1	NT_028050	AL451051	99358760	3	0	1998	0	1998
S/G/Y/R/B/O	NT_028050	AL451051	99358760	3	chr1	NT_028050	AC096949	99433531	3	0	0	1656	1656
S/G/Y/R/B/O	NT_028050	AC096949	99433531	3	chr1	NT_028050	AC118553	99537984	1	22912	0	0	22912
S/G/Y/R/B/O	NT_028050	AC118553	99537984	1	chr1	NT_028050	AC093019	99636538	3	26512	0	7257	33769
S/G/Y/R/B/O	NT_028050	AC118553	99537984	1			AC027557	99358760		15295	0	1171	16466
S/G/Y/R/B/O	NT_028050	AC093019	99636538	3	chr1	NT_028050	AL445928	99753449	3	0	1694	0	1694
S/G/Y/R/B/O	NT_028050	AC093019	99636538	3			AC027557	88294965		56908	737	17754	75399
S/G/Y/R/B/O	NT_028050	AL445928	99753449	3	chr1	NT_028050	AL663111	99925333	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL445928	99753449	3			AC027557	99753449		36642	7769	8852	53263
S/G/Y/R/B/O	NT_028050	AL445928	99753449	3			AL355995	99636538		42935	7855	27978	78768
S/G/Y/R/B/O	NT_028050	AL663111	99925333	3	chr1	NT_028050	AC104457	99949286	3	0	1998	0	1998
S/G/Y/R/B/O	NT_028050	AC104457	99949286	3	chr1	NT_028050	AL589990	100115792	3	0	1997	0	1997
S/G/Y/R/B/O	NT_028050	AC104457	99949286	3			AC011265	99753449		117049	1671	19651	138371
S/G/Y/R/B/O	NT_028050	AL589990	100115792	3	chr1	NT_028050	AC099670	100167682	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL589990	100115792	3			AC011265	99925333		20270	2807	0	23077
S/G/Y/R/B/O	NT_028050	AC099670	100167682	3	chr1	NT_028050	AL592446	100336908	3	0	0	0	0
S/G/Y/R/B/O	NT_028050	AL592446	100336908	3	chr1	NT_028050	AC093428	100364695	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028050	AC093428	100364695	3	chr1	NT_028050	AC104506	100515553	3	31713	0	0	31713
S/G/Y/R/B/O	NT_028050	AC104506	100515553	3	chr1	NT_028050	AL732465	100615597	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028050	AC104506	100515553	3			AL139019	100364695		43021	5128	1161	49310
S/G/Y/R/B/O	NT_028050	AL732465	100615597	3	chr1	NT_028050	AC093157	100629147	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL732465	100615597	3			AL139019	100515553		17526	0	0	17526
S/G/Y/R/B/O	NT_028050	AC093157	100629147	3	chr1	NT_028050	AC119501	100821736	3	4254	0	0	4254
S/G/Y/R/B/O	NT_028050	AC093157	100629147	3			AL139019	100821736		32250	1661	29159	63070
S/G/Y/R/B/O	NT_028050	AC119501	100821736	3	chr1	NT_028050	AL109741	100847967	3	0	740	0	740
S/G/Y/R/B/O	NT_028050	AL109741	100847967	3	chr1	NT_028050	AL732605	100979665	3	0	0	1652	1652
S/G/Y/R/B/O	NT_028050	AL732605	100979665	3	chr1	NT_028050	AL662904	101001305	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL662904	101001305	3	chr1	NT_028050	AC114483	101110347	3	0	0	0	0
S/G/Y/R/B/O	NT_028050	AC114483	101110347	3	chr1	NT_028050	AL732416	101217097	3	0	1989	0	1989
S/G/Y/R/B/O	NT_028050	AC114483	101110347	3			AC023327	100979665		16780	2444	0	19224
S/G/Y/R/B/O	NT_028050	AC114483	101110347	3			AL390200	100979665		29070	0	14975	44045
S/G/Y/R/B/O	NT_028050	AL732416	101217097	3	chr1	NT_028050	AC104334	101290062	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL732416	101217097	3			AC023327	101217097		67944	0	0	67944
S/G/Y/R/B/O	NT_028050	AC104334	101290062	3	chr1	NT_028050	AL359760	101417942	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AC104334	101290062	3			AC016423	101110347		38503	2819	16028	57350
S/G/Y/R/B/O	NT_028050	AC104334	101290062	3			AC023327	101110347		42318	0	28031	70349
S/G/Y/R/B/O	NT_028050	AL359760	101417942	3	chr1	NT_028050	AL356280	101494999	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL359760	101417942	3			AC016423	101217097		55729	4850	0	60579
S/G/Y/R/B/O	NT_028050	AL359760	101417942	3			AL158170	101290062		60596	0	1992	62588
S/G/Y/R/B/O	NT_028050	AL356280	101494999	3	chr1	NT_028050	AL592154	101666250	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028050	AL356280	101494999	3			AC016423	101494999		12062	0	0	12062
S/G/Y/R/B/O	NT_028050	AL356280	101494999	3			AL158170	101494999		42481	2893	8637	54011
S/G/Y/R/B/O	NT_028050	AL592154	101666250	3	chr1	NT_028050	AC114485	101776775	3	0	1996	0	1996
S/G/Y/R/B/O	NT_028050	AC114485	101776775	3	chr1	NT_028050	AL359928	101915397	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL359928	101915397	3	chr1	NT_028050	AL359197	101977252	3	0	1996	0	1996
S/G/Y/R/B/O	NT_028050	AL359197	101977252	3	chr1	NT_028050	AL627310	102166938	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL627310	102166938	3	chr1	NT_028050	AL645488	102304345	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028050	AL627310	102166938	3			AL645770	102304345		27390	0	75363	102753
S/G/Y/R/B/O	NT_028050	AL645488	102304345	3	chr1	NT_028050	AC099567	102407986	3	0	1998	0	1998
S/G/Y/R/B/O	NT_028050	AL645488	102304345	3			AC079629	102304345		58760	0	0	58760
S/G/Y/R/B/O	NT_028050	AL645488	102304345	3			AL645770	102166938		15014	0	0	15014
S/G/Y/R/B/O	NT_028050	AC099567	102407986	3	chr1	NT_028050	AL627203	102577386	3	0	0	0	0
S/G/Y/R/B/O	NT_028050	AC099567	102407986	3			AC021948	102166938		61063	4998	1281	67342
S/G/Y/R/B/O	NT_028050	AC099567	102407986	3			AC022751	102166938		39894	2073	0	41967
S/G/Y/R/B/O	NT_028050	AL627203	102577386	3	chr1	NT_028050	AC093150	102643721	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AL627203	102577386	3			AC021948	102304345		50481	1912	0	52393
S/G/Y/R/B/O	NT_028050	AL627203	102577386	3			AC022751	102304345		27147	4143	23282	54572
S/G/Y/R/B/O	NT_028050	AC093150	102643721	3	chr1	NT_028050	AL590082	102831666	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028050	AC093150	102643721	3			AC022751	102643721		18323	1715	0	20038
S/G/Y/R/B/O	NT_028050	AL590082	102831666	3