Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_028054

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_028054	AL356693	5681859	3	chr1	NT_028054	AL356261	5754469	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL356693	5681859	3			AC026968	5364877		40159	4644	165	44968
S/G/Y/R/B/O	NT_028054	AL356261	5754469	3	chr1	NT_028054	AL035406	5852771	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL356261	5754469	3			AC026968	5754469		43888	4081	31337	79306
S/G/Y/R/B/O	NT_028054	AL035406	5852771	3	chr1	NT_028054	AL031847	6012422	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL035406	5852771	3			AC026968	5681859		29537	0	2009	31546
S/G/Y/R/B/O	NT_028054	AL035406	5852771	3			AL589792	6012422		51374	2366	0	53740
S/G/Y/R/B/O	NT_028054	AL031847	6012422	3	chr1	NT_028054	AL031848	6178840	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL031847	6012422	3			AL356496	5852771		48177	8329	16841	73347
S/G/Y/R/B/O	NT_028054	AL031847	6012422	3			AL589792	5852771		75167	0	3310	78477
S/G/Y/R/B/O	NT_028054	AL031848	6178840	3	chr1	NT_028054	AL158217	6321805	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL158217	6321805	3	chr1	NT_028054	AL591866	6373787	3	0	1997	0	1997
S/G/Y/R/B/O	NT_028054	AL591866	6373787	3	chr1	NT_028054	AL031447	6474326	3	16622	0	0	16622
S/G/Y/R/B/O	NT_028054	AL591866	6373787	3			AC062024	6373787		44043	6142	16795	66980
S/G/Y/R/B/O	NT_028054	AL591866	6373787	3			AC108123	6373787		30602	0	1767	32369
S/G/Y/R/B/O	NT_028054	AL031447	6474326	3	chr1	NT_028054	AL159177	6569861	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028054	AL031447	6474326	3			AC062024	6321805		80764	2462	6729	89955
S/G/Y/R/B/O	NT_028054	AL031447	6474326	3			AC108123	6321805		23321	0	44492	67813
S/G/Y/R/B/O	NT_028054	AL159177	6569861	3	chr1	NT_028054	AL591163	6577773	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL591163	6577773	3	chr1	NT_028054	AL590128	6647592	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028054	AL591163	6577773	3			AC108123	6577773		21422	0	17630	39052
S/G/Y/R/B/O	NT_028054	AL590128	6647592	3	chr1	NT_028054	AL512330	6849985	3	0	0	1856	1856
S/G/Y/R/B/O	NT_028054	AL590128	6647592	3			AL391218	6647592		66058	5285	10945	82288
S/G/Y/R/B/O	NT_028054	AL512330	6849985	3	chr1	NT_028054	AL683812	6909490	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL512330	6849985	3			AL391218	6577773		53691	3748	0	57439
S/G/Y/R/B/O	NT_028054	AL683812	6909490	3	chr1	NT_028054	Z97635	6948221	3	0	1997	0	1997
S/G/Y/R/B/O	NT_028054	Z97635	6948221	3	chr1	NT_028054	Z98052	7033321	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	Z98052	7033321	3	chr1	NT_028054	Z97987	7145688	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	Z97987	7145688	3	chr1	NT_028054	AL365194	7300764	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL365194	7300764	3	chr1	NT_028054	AL157716	7364412	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL365194	7300764	3			AC073482	7033321		21312	0	36808	58120
S/G/Y/R/B/O	NT_028054	AL157716	7364412	3	chr1	NT_028054	AL596210	7422723	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL157716	7364412	3			AC073482	7145688		14945	0	22522	37467
S/G/Y/R/B/O	NT_028054	AL596210	7422723	3	chr1	NT_028054	AL359881	7529835	3	0	1996	0	1996
S/G/Y/R/B/O	NT_028054	AL596210	7422723	3			AC073482	7422723		24806	6472	9852	41130
S/G/Y/R/B/O	NT_028054	AL359881	7529835	3	chr1	NT_028054	Z98884	7593757	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	Z98884	7593757	3	chr1	NT_028054	AL009183	7754484	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	Z98884	7593757	3			AC025220	7422723		33549	0	15599	49148
S/G/Y/R/B/O	NT_028054	Z98884	7593757	3			AL365441	7754484		48308	0	84357	132665
S/G/Y/R/B/O	NT_028054	AL009183	7754484	3	chr1	NT_028054	AL034417	7820232	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL009183	7754484	3			AC025220	7754484		28022	14634	1012	43668
S/G/Y/R/B/O	NT_028054	AL009183	7754484	3			AC025225	7754484		14784	9758	13217	37759
S/G/Y/R/B/O	NT_028054	AL009183	7754484	3			AL512402	7754484		50479	0	0	50479
S/G/Y/R/B/O	NT_028054	AL034417	7820232	3	chr1	NT_028054	AL672201	7942411	3	0	1999	0	1999
S/G/Y/R/B/O	NT_028054	AL034417	7820232	3			AC025220	7593757		30334	4285	941	35560
S/G/Y/R/B/O	NT_028054	AL034417	7820232	3			AC025225	7593757		45830	7319	20053	73202
S/G/Y/R/B/O	NT_028054	AL034417	7820232	3			AL512402	7593757		122248	2008	0	124256
S/G/Y/R/B/O	NT_028054	AL672201	7942411	3	chr1	NT_028054	AL358876	7985955	3	0	1993	0	1993
S/G/Y/R/B/O	NT_028054	AL358876	7985955	3	chr1	NT_028054	AL356072	8155139	3	0	1998	0	1998
S/G/Y/R/B/O	NT_028054	AL358876	7985955	3			AC020552	7985955		167320	0	0	167320
S/G/Y/R/B/O	NT_028054	AL358876	7985955	3			AC024508	7985955		28203	9208	24513	61924
S/G/Y/R/B/O	NT_028054	AL356072	8155139	3	chr1	NT_028054	AL096855	8275471	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028054	AL356072	8155139	3			AC016049	7942411		86495	6359	3388	96242
S/G/Y/R/B/O	NT_028054	AL356072	8155139	3			AC024508	7942411		51158	13475	4550	69183
S/G/Y/R/B/O	NT_028054	AL356072	8155139	3			AC034143	7942411		81919	4160	24363	110442
S/G/Y/R/B/O	NT_028054	AL356072	8155139	3			AC079745	7942411		13546	0	37277	50823
S/G/Y/R/B/O	NT_028054	AL096855	8275471	3	chr1	NT_028054	AL357713	8451874	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL096855	8275471	3			AC016049	7985955		55210	0	0	55210
S/G/Y/R/B/O	NT_028054	AL096855	8275471	3			AC034143	7985955		36590	0	21342	57932
S/G/Y/R/B/O	NT_028054	AL096855	8275471	3			AC079745	7985955		18699	5822	15178	39699
S/G/Y/R/B/O	NT_028054	AL357713	8451874	3	chr1	NT_028054	AL357552	8555287	1	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL357713	8451874	3			AC026160	8451874		102293	0	0	102293
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1	chr1	NT_028054	AL354930	8699250	3	0	0	1842	1842
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1			AC025240	8275471		16154	0	33920	50074
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1			AC025240	8275471		16154	0	33920	50074
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1			AC026160	8275471		30419	1664	40343	72426
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1			AC026160	8275471		30419	1664	40343	72426
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1			AC115093	8275471		41848	0	19625	61473
S/G/Y/R/B/O	NT_028054	AL357552	8555287	1			AC115093	8275471		41848	0	19625	61473
S/G/Y/R/B/O	NT_028054	AL354930	8699250	3	chr1	NT_028054	AL139415	8727650	3	0	2000	0	2000
S/G/Y/R/B/O	NT_028054	AL354930	8699250	3			AC025240	8699250		21056	0	1200	22256
S/G/Y/R/B/O	NT_028054	AL139415	8727650	3	chr1	NT_028054	AL158048	8867078	3	0	0	1641	1641
S/G/Y/R/B/O	NT_028054	AL139415	8727650	3			AC025240	8555287		43799	0	0	43799
S/G/Y/R/B/O	NT_028054	AL139415	8727650	3			AC115093	8555287		20119	0	0	20119
S/G/Y/R/B/O	NT_028054	AL139415	8727650	3			AL356306	8699250		20748	5014	12600	38362
S/G/Y/R/B/O	NT_028054	AL158048	8867078	3	chr1	NT_028054	AL591166	9004189	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL158048	8867078	3			AL356306	8727650		20479	786	0	21265
S/G/Y/R/B/O	NT_028054	AL591166	9004189	3	chr1	NT_028054	Z98044	9025541	3	0	1998	0	1998
S/G/Y/R/B/O	NT_028054	Z98044	9025541	3	chr1	NT_028054	AL008734	9152691	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL008734	9152691	3	chr1	NT_028054	AL358252	9237707	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL358252	9237707	3