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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_034383 | AC133865 | 74315674 | 3 | chr1 | NT_034383 | AC099786 | 74391923 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034383 | AC099786 | 74391923 | 3 | chr1 | NT_034383 | AC118550 | 74573366 | 3 | 0 | 1128 | 0 | 1128 |
S/G/Y/R/B/O |
NT_034383 | AC099786 | 74391923 | 3 |   |   | AC021697 | 74139825 | | 47864 | 0 | 1253 | 49117 |
S/G/Y/R/B/O |
NT_034383 | AC099786 | 74391923 | 3 |   |   | AC023379 | 74139825 | | 39696 | 7635 | 3418 | 50749 |
S/G/Y/R/B/O |
NT_034383 | AC099786 | 74391923 | 3 |   |   | AC073499 | 74139825 | | 84879 | 0 | 27019 | 111898 |
S/G/Y/R/B/O |
NT_034383 | AC118550 | 74573366 | 3 | chr1 | NT_034383 | AC107627 | 74615369 | 3 | 4492 | 0 | 0 | 4492 |
S/G/Y/R/B/O |
NT_034383 | AC118550 | 74573366 | 3 |   |   | AL356429 | 74615369 | | 16379 | 2071 | 0 | 18450 |
S/G/Y/R/B/O |
NT_034383 | AC107627 | 74615369 | 3 | chr1 | NT_034383 | AC118990 | 74701386 | 3 | 2465 | 0 | 0 | 2465 |
S/G/Y/R/B/O |
NT_034383 | AC107627 | 74615369 | 3 |   |   | AC027384 | 74615369 | | 39828 | 0 | 10997 | 50825 |
S/G/Y/R/B/O |
NT_034383 | AC107627 | 74615369 | 3 |   |   | AL356429 | 74701386 | | 16723 | 4353 | 12569 | 33645 |
S/G/Y/R/B/O |
NT_034383 | AC118990 | 74701386 | 3 | chr1 | NT_034383 | AC093156 | 74747306 | 3 | 2361 | 0 | 0 | 2361 |
S/G/Y/R/B/O |
NT_034383 | AC118990 | 74701386 | 3 |   |   | AC027384 | 74701386 | | 41055 | 0 | 0 | 41055 |
S/G/Y/R/B/O |
NT_034383 | AC093156 | 74747306 | 3 | chr1 | NT_034383 | AL096829 | 74943791 | 3 | 21785 | 0 | 0 | 21785 |
S/G/Y/R/B/O |
NT_034383 | AC093156 | 74747306 | 3 |   |   | AL354667 | 74943791 | | 42297 | 5042 | 0 | 47339 |
S/G/Y/R/B/O |
NT_034383 | AL096829 | 74943791 | 3 | chr1 | NT_034383 | AL137803 | 75057929 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034383 | AL096829 | 74943791 | 3 |   |   | AL354667 | 74747306 | | 95727 | 557 | 9016 | 105300 |
S/G/Y/R/B/O |
NT_034383 | AL137803 | 75057929 | 3 | chr1 | NT_034383 | AL357314 | 75115644 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034383 | AL357314 | 75115644 | 3 | chr1 | NT_034383 | AL445464 | 75225210 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034383 | AL357314 | 75115644 | 3 |   |   | AC009337 | 74747306 | | 41001 | 3758 | 9138 | 53897 |
S/G/Y/R/B/O |
NT_034383 | AL357314 | 75115644 | 3 |   |   | AL359206 | 74747306 | | 76160 | 0 | 12418 | 88578 |
S/G/Y/R/B/O |
NT_034383 | AL445464 | 75225210 | 3 | chr1 | NT_034383 | AC092813 | 75326307 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_034383 | AL445464 | 75225210 | 3 |   |   | AC009337 | 74747306 | | 32037 | 5860 | 0 | 37897 |
S/G/Y/R/B/O |
NT_034383 | AL445464 | 75225210 | 3 |   |   | AC025147 | 74747306 | | 56648 | 915 | 0 | 57563 |
S/G/Y/R/B/O |
NT_034383 | AL445464 | 75225210 | 3 |   |   | AL356979 | 75326307 | | 10605 | 1126 | 0 | 11731 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 | chr1 | NT_034383 | AC094023 | 75506836 | 3 | 37748 | 0 | 0 | 37748 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 | chr1 | NT_034383 | AL596217 | 75591725 | 3 | 25236 | 0 | 0 | 25236 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 |   |   | AC012517 | 75326307 | | 62835 | 0 | 0 | 62835 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 |   |   | AC023917 | 75326307 | | 17197 | 3648 | 1828 | 22673 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 |   |   | AC079307 | 75326307 | | 19163 | 0 | 0 | 19163 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 |   |   | AL356979 | 75506836 | | 88539 | 7838 | 4945 | 101322 |
S/G/Y/R/B/O |
NT_034383 | AC092813 | 75326307 | 3 |   |   | AL391624 | 75506836 | | 63113 | 5519 | 65754 | 134386 |
S/G/Y/R/B/O |
NT_034383 | AC094023 | 75506836 | 3 | chr1 | NT_034383 | AL596217 | 75591725 | 3 | 109885 | 0 | 0 | 109885 |
S/G/Y/R/B/O |
NT_034383 | AC094023 | 75506836 | 3 |   |   | AC012517 | 75591725 | | 50914 | 0 | 1130 | 52044 |
S/G/Y/R/B/O |
NT_034383 | AC094023 | 75506836 | 3 |   |   | AC023917 | 75591725 | | 78554 | 10634 | 7861 | 97049 |
S/G/Y/R/B/O |
NT_034383 | AC094023 | 75506836 | 3 |   |   | AC079307 | 75591725 | | 76372 | 2689 | 0 | 79061 |
S/G/Y/R/B/O |
NT_034383 | AL596217 | 75591725 | 3 | chr1 | NT_034383 | AC103592 | 75665334 | 3 | 0 | 0 | 363 | 363 |
S/G/Y/R/B/O |
NT_034383 | AL596217 | 75591725 | 3 | chr1 | NT_034383 | AC092813 | 75326307 | 3 | 25236 | 0 | 0 | 25236 |
S/G/Y/R/B/O |
NT_034383 | AL596217 | 75591725 | 3 |   |   | AC012517 | 75591725 | | 38438 | 0 | 1269 | 39707 |
S/G/Y/R/B/O |
NT_034383 | AL596217 | 75591725 | 3 |   |   | AC023917 | 75591725 | | 137161 | 13573 | 9887 | 160621 |
S/G/Y/R/B/O |
NT_034383 | AL596217 | 75591725 | 3 |   |   | AC079307 | 75591725 | | 78030 | 0 | 2687 | 80717 |
S/G/Y/R/B/O |
NT_034383 | AL596217 | 75591725 | 3 |   |   | AL355983 | 75665334 | | 33208 | 0 | 24241 | 57449 |
S/G/Y/R/B/O |
NT_034383 | AC103592 | 75665334 | 3 | chr1 | NT_034383 | AC098655 | 75862343 | 3 | 32185 | 0 | 0 | 32185 |
S/G/Y/R/B/O |
NT_034383 | AC103592 | 75665334 | 3 |   |   | AC099769 | 75862343 | | 59102 | 0 | 0 | 59102 |
S/G/Y/R/B/O |
NT_034383 | AC103592 | 75665334 | 3 |   |   | AL139155 | 75862343 | | 103888 | 10063 | 0 | 113951 |
S/G/Y/R/B/O |
NT_034383 | AC103592 | 75665334 | 3 |   |   | AL355983 | 75862343 | | 60835 | 0 | 2372 | 63207 |
S/G/Y/R/B/O |
NT_034383 | AC098655 | 75862343 | 3 | chr1 | NT_034383 | AC105279 | 75906048 | 3 | 104662 | 0 | 0 | 104662 |
S/G/Y/R/B/O |
NT_034383 | AC098655 | 75862343 | 3 | chr1 | NT_034383 | AC104458 | 76005296 | 3 | 16804 | 0 | 0 | 16804 |
S/G/Y/R/B/O |
NT_034383 | AC098655 | 75862343 | 3 |   |   | AC012109 | 75591725 | | 99635 | 0 | 0 | 99635 |
S/G/Y/R/B/O |
NT_034383 | AC098655 | 75862343 | 3 |   |   | AC026066 | 75591725 | | 11497 | 12062 | 0 | 23559 |
S/G/Y/R/B/O |
NT_034383 | AC098655 | 75862343 | 3 |   |   | AC099769 | 75591725 | | 72688 | 0 | 0 | 72688 |
S/G/Y/R/B/O |
NT_034383 | AC105279 | 75906048 | 3 | chr1 | NT_034383 | AC104458 | 76005296 | 3 | 5475 | 0 | 0 | 5475 |
S/G/Y/R/B/O |
NT_034383 | AC105279 | 75906048 | 3 |   |   | AC012109 | 75906048 | | 80258 | 0 | 0 | 80258 |
S/G/Y/R/B/O |
NT_034383 | AC104458 | 76005296 | 3 | chr1 | NT_034383 | AC116315 | 76140359 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034383 | AC104458 | 76005296 | 3 | chr1 | NT_034383 | AC098655 | 75862343 | 3 | 16804 | 0 | 0 | 16804 |
S/G/Y/R/B/O |
NT_034383 | AC104458 | 76005296 | 3 |   |   | AC012109 | 76005296 | | 46937 | 0 | 0 | 46937 |
S/G/Y/R/B/O |
NT_034383 | AC104458 | 76005296 | 3 |   |   | AC026066 | 76005296 | | 79271 | 7667 | 6219 | 93157 |
S/G/Y/R/B/O |
NT_034383 | AC104458 | 76005296 | 3 |   |   | AC099672 | 75862343 | | 75708 | 0 | 0 | 75708 |
S/G/Y/R/B/O |
NT_034383 | AC116315 | 76140359 | 3 | chr1 | NT_034383 | AC099060 | 76234140 | 3 | 116769 | 0 | 0 | 116769 |
S/G/Y/R/B/O |
NT_034383 | AC116315 | 76140359 | 3 |   |   | AC026066 | 75906048 | | 48059 | 0 | 1185 | 49244 |
S/G/Y/R/B/O |
NT_034383 | AC099060 | 76234140 | 3 | chr1 | NT_034383 | AC069315 | 76269998 | 1 | 26900 | 0 | 2460 | 29360 |
S/G/Y/R/B/O |
NT_034383 | AC099060 | 76234140 | 3 |   |   | AC026066 | 76234140 | | 20808 | 0 | 86 | 20894 |
S/G/Y/R/B/O |
NT_034383 | AC069315 | 76269998 | 1 | chr1 | NT_034383 | AC096951 | 76317435 | 3 | 44409 | 641 | 2388 | 47438 |
S/G/Y/R/B/O |
NT_034383 | AC096951 | 76317435 | 3 | chr1 | NT_034383 | AL035409 | 76420034 | 3 | 55429 | 0 | 0 | 55429 |
S/G/Y/R/B/O |
NT_034383 | AL035409 | 76420034 | 3 | chr1 | NT_034383 | AC113935 | 76503387 | 3 | 34909 | 0 | 0 | 34909 |
S/G/Y/R/B/O |
NT_034383 | AL035409 | 76420034 | 3 |   |   | AC026874 | 76420034 | | 47458 | 2946 | 23176 | 73580 |
S/G/Y/R/B/O |
NT_034383 | AC113935 | 76503387 | 3 | chr1 | NT_034383 | AC093433 | 76610900 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034383 | AC113935 | 76503387 | 3 |   |   | AC026874 | 76503387 | | 58011 | 0 | 49610 | 107621 |
S/G/Y/R/B/O |
NT_034383 | AC113935 | 76503387 | 3 |   |   | AC073027 | 76503387 | | 16229 | 2627 | 5911 | 24767 |
S/G/Y/R/B/O |
NT_034383 | AC113935 | 76503387 | 3 |   |   | AL138797 | 76420034 | | 10693 | 921 | 0 | 11614 |
S/G/Y/R/B/O |
NT_034383 | AC093433 | 76610900 | 3 | chr1 | NT_034383 | AC095030 | 76731734 | 3 | 0 | 1915 | 0 | 1915 |
S/G/Y/R/B/O |
NT_034383 | AC093433 | 76610900 | 3 |   |   | AC019136 | 76420034 | | 37915 | 0 | 14332 | 52247 |
S/G/Y/R/B/O |
NT_034383 | AC093433 | 76610900 | 3 |   |   | AC026874 | 76420034 | | 12325 | 0 | 16452 | 28777 |
S/G/Y/R/B/O |
NT_034383 | AC093433 | 76610900 | 3 |   |   | AC073027 | 76420034 | | 43389 | 21837 | 17593 | 82819 |
S/G/Y/R/B/O |
NT_034383 | AC093433 | 76610900 | 3 |   |   | AL138797 | 76731734 | | 17369 | 9208 | 4130 | 30707 |
S/G/Y/R/B/O |
NT_034383 | AC093433 | 76610900 | 3 |   |   | AL500523 | 76731734 | | 46734 | 0 | 13260 | 59994 |
S/G/Y/R/B/O |
NT_034383 | AC095030 | 76731734 | 3 | chr1 | NT_034383 | AC093575 | 76873741 | 3 | 43791 | 0 | 0 | 43791 |
S/G/Y/R/B/O |
NT_034383 | AC095030 | 76731734 | 3 |   |   | AC019136 | 76731734 | | 68545 | 0 | 0 | 68545 |
S/G/Y/R/B/O |
NT_034383 | AC095030 | 76731734 | 3 |   |   | AC026073 | 76731734 | | 19897 | 0 | 38710 | 58607 |
S/G/Y/R/B/O |
NT_034383 | AC095030 | 76731734 | 3 |   |   | AL500523 | 76873741 | | 55855 | 0 | 0 | 55855 |
S/G/Y/R/B/O |
NT_034383 | AC093575 | 76873741 | 3 | chr1 | NT_034383 | AC118549 | 76988891 | 3 | 0 | 1835 | 0 | 1835 |
S/G/Y/R/B/O |
NT_034383 | AC093575 | 76873741 | 3 |   |   | AC026073 | 76873741 | | 74875 | 3477 | 10158 | 88510 |
S/G/Y/R/B/O |
NT_034383 | AC118549 | 76988891 | 3 | chr1 | NT_034383 | AC114487 | 77052336 | 3 | 2043 | 0 | 0 | 2043 |
S/G/Y/R/B/O |
NT_034383 | AC114487 | 77052336 | 3 | chr1 | NT_034383 | AL390880 | 77211249 | 1 | 2186 | 0 | 0 | 2186 |
S/G/Y/R/B/O |
NT_034383 | AL390880 | 77211249 | 1 | chr1 | NT_034383 | AC096948 | 77277386 | 3 | 45818 | 5564 | 0 | 51382 |
S/G/Y/R/B/O |
NT_034383 | AC096948 | 77277386 | 3 | chr1 | NT_034383 | AC103591 | 77392982 | 3 | 40642 | 0 | 0 | 40642 |
S/G/Y/R/B/O |
NT_034383 | AC103591 | 77392982 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_034383 | AC103591 | 77392982 | 3 |   |   | AC025209 | 77211249 | | 42964 | 5802 | 26358 | 75124 |
S/G/Y/R/B/O |
NT_034383 | AC103591 | 77392982 | 3 |   |   | AC093118 | 77211249 | | 83659 | 0 | 0 | 83659 |
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