Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_034383

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_034383	AC133865	74315674	3	chr1	NT_034383	AC099786	74391923	3	0	0	0	0
S/G/Y/R/B/O	NT_034383	AC099786	74391923	3	chr1	NT_034383	AC118550	74573366	3	0	1128	0	1128
S/G/Y/R/B/O	NT_034383	AC099786	74391923	3			AC021697	74139825		47864	0	1253	49117
S/G/Y/R/B/O	NT_034383	AC099786	74391923	3			AC023379	74139825		39696	7635	3418	50749
S/G/Y/R/B/O	NT_034383	AC099786	74391923	3			AC073499	74139825		84879	0	27019	111898
S/G/Y/R/B/O	NT_034383	AC118550	74573366	3	chr1	NT_034383	AC107627	74615369	3	4492	0	0	4492
S/G/Y/R/B/O	NT_034383	AC118550	74573366	3			AL356429	74615369		16379	2071	0	18450
S/G/Y/R/B/O	NT_034383	AC107627	74615369	3	chr1	NT_034383	AC118990	74701386	3	2465	0	0	2465
S/G/Y/R/B/O	NT_034383	AC107627	74615369	3			AC027384	74615369		39828	0	10997	50825
S/G/Y/R/B/O	NT_034383	AC107627	74615369	3			AL356429	74701386		16723	4353	12569	33645
S/G/Y/R/B/O	NT_034383	AC118990	74701386	3	chr1	NT_034383	AC093156	74747306	3	2361	0	0	2361
S/G/Y/R/B/O	NT_034383	AC118990	74701386	3			AC027384	74701386		41055	0	0	41055
S/G/Y/R/B/O	NT_034383	AC093156	74747306	3	chr1	NT_034383	AL096829	74943791	3	21785	0	0	21785
S/G/Y/R/B/O	NT_034383	AC093156	74747306	3			AL354667	74943791		42297	5042	0	47339
S/G/Y/R/B/O	NT_034383	AL096829	74943791	3	chr1	NT_034383	AL137803	75057929	3	0	0	0	0
S/G/Y/R/B/O	NT_034383	AL096829	74943791	3			AL354667	74747306		95727	557	9016	105300
S/G/Y/R/B/O	NT_034383	AL137803	75057929	3	chr1	NT_034383	AL357314	75115644	3	0	0	0	0
S/G/Y/R/B/O	NT_034383	AL357314	75115644	3	chr1	NT_034383	AL445464	75225210	3	0	0	0	0
S/G/Y/R/B/O	NT_034383	AL357314	75115644	3			AC009337	74747306		41001	3758	9138	53897
S/G/Y/R/B/O	NT_034383	AL357314	75115644	3			AL359206	74747306		76160	0	12418	88578
S/G/Y/R/B/O	NT_034383	AL445464	75225210	3	chr1	NT_034383	AC092813	75326307	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034383	AL445464	75225210	3			AC009337	74747306		32037	5860	0	37897
S/G/Y/R/B/O	NT_034383	AL445464	75225210	3			AC025147	74747306		56648	915	0	57563
S/G/Y/R/B/O	NT_034383	AL445464	75225210	3			AL356979	75326307		10605	1126	0	11731
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3	chr1	NT_034383	AC094023	75506836	3	37748	0	0	37748
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3	chr1	NT_034383	AL596217	75591725	3	25236	0	0	25236
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3			AC012517	75326307		62835	0	0	62835
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3			AC023917	75326307		17197	3648	1828	22673
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3			AC079307	75326307		19163	0	0	19163
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3			AL356979	75506836		88539	7838	4945	101322
S/G/Y/R/B/O	NT_034383	AC092813	75326307	3			AL391624	75506836		63113	5519	65754	134386
S/G/Y/R/B/O	NT_034383	AC094023	75506836	3	chr1	NT_034383	AL596217	75591725	3	109885	0	0	109885
S/G/Y/R/B/O	NT_034383	AC094023	75506836	3			AC012517	75591725		50914	0	1130	52044
S/G/Y/R/B/O	NT_034383	AC094023	75506836	3			AC023917	75591725		78554	10634	7861	97049
S/G/Y/R/B/O	NT_034383	AC094023	75506836	3			AC079307	75591725		76372	2689	0	79061
S/G/Y/R/B/O	NT_034383	AL596217	75591725	3	chr1	NT_034383	AC103592	75665334	3	0	0	363	363
S/G/Y/R/B/O	NT_034383	AL596217	75591725	3	chr1	NT_034383	AC092813	75326307	3	25236	0	0	25236
S/G/Y/R/B/O	NT_034383	AL596217	75591725	3			AC012517	75591725		38438	0	1269	39707
S/G/Y/R/B/O	NT_034383	AL596217	75591725	3			AC023917	75591725		137161	13573	9887	160621
S/G/Y/R/B/O	NT_034383	AL596217	75591725	3			AC079307	75591725		78030	0	2687	80717
S/G/Y/R/B/O	NT_034383	AL596217	75591725	3			AL355983	75665334		33208	0	24241	57449
S/G/Y/R/B/O	NT_034383	AC103592	75665334	3	chr1	NT_034383	AC098655	75862343	3	32185	0	0	32185
S/G/Y/R/B/O	NT_034383	AC103592	75665334	3			AC099769	75862343		59102	0	0	59102
S/G/Y/R/B/O	NT_034383	AC103592	75665334	3			AL139155	75862343		103888	10063	0	113951
S/G/Y/R/B/O	NT_034383	AC103592	75665334	3			AL355983	75862343		60835	0	2372	63207
S/G/Y/R/B/O	NT_034383	AC098655	75862343	3	chr1	NT_034383	AC105279	75906048	3	104662	0	0	104662
S/G/Y/R/B/O	NT_034383	AC098655	75862343	3	chr1	NT_034383	AC104458	76005296	3	16804	0	0	16804
S/G/Y/R/B/O	NT_034383	AC098655	75862343	3			AC012109	75591725		99635	0	0	99635
S/G/Y/R/B/O	NT_034383	AC098655	75862343	3			AC026066	75591725		11497	12062	0	23559
S/G/Y/R/B/O	NT_034383	AC098655	75862343	3			AC099769	75591725		72688	0	0	72688
S/G/Y/R/B/O	NT_034383	AC105279	75906048	3	chr1	NT_034383	AC104458	76005296	3	5475	0	0	5475
S/G/Y/R/B/O	NT_034383	AC105279	75906048	3			AC012109	75906048		80258	0	0	80258
S/G/Y/R/B/O	NT_034383	AC104458	76005296	3	chr1	NT_034383	AC116315	76140359	3	0	0	0	0
S/G/Y/R/B/O	NT_034383	AC104458	76005296	3	chr1	NT_034383	AC098655	75862343	3	16804	0	0	16804
S/G/Y/R/B/O	NT_034383	AC104458	76005296	3			AC012109	76005296		46937	0	0	46937
S/G/Y/R/B/O	NT_034383	AC104458	76005296	3			AC026066	76005296		79271	7667	6219	93157
S/G/Y/R/B/O	NT_034383	AC104458	76005296	3			AC099672	75862343		75708	0	0	75708
S/G/Y/R/B/O	NT_034383	AC116315	76140359	3	chr1	NT_034383	AC099060	76234140	3	116769	0	0	116769
S/G/Y/R/B/O	NT_034383	AC116315	76140359	3			AC026066	75906048		48059	0	1185	49244
S/G/Y/R/B/O	NT_034383	AC099060	76234140	3	chr1	NT_034383	AC069315	76269998	1	26900	0	2460	29360
S/G/Y/R/B/O	NT_034383	AC099060	76234140	3			AC026066	76234140		20808	0	86	20894
S/G/Y/R/B/O	NT_034383	AC069315	76269998	1	chr1	NT_034383	AC096951	76317435	3	44409	641	2388	47438
S/G/Y/R/B/O	NT_034383	AC096951	76317435	3	chr1	NT_034383	AL035409	76420034	3	55429	0	0	55429
S/G/Y/R/B/O	NT_034383	AL035409	76420034	3	chr1	NT_034383	AC113935	76503387	3	34909	0	0	34909
S/G/Y/R/B/O	NT_034383	AL035409	76420034	3			AC026874	76420034		47458	2946	23176	73580
S/G/Y/R/B/O	NT_034383	AC113935	76503387	3	chr1	NT_034383	AC093433	76610900	3	0	0	0	0
S/G/Y/R/B/O	NT_034383	AC113935	76503387	3			AC026874	76503387		58011	0	49610	107621
S/G/Y/R/B/O	NT_034383	AC113935	76503387	3			AC073027	76503387		16229	2627	5911	24767
S/G/Y/R/B/O	NT_034383	AC113935	76503387	3			AL138797	76420034		10693	921	0	11614
S/G/Y/R/B/O	NT_034383	AC093433	76610900	3	chr1	NT_034383	AC095030	76731734	3	0	1915	0	1915
S/G/Y/R/B/O	NT_034383	AC093433	76610900	3			AC019136	76420034		37915	0	14332	52247
S/G/Y/R/B/O	NT_034383	AC093433	76610900	3			AC026874	76420034		12325	0	16452	28777
S/G/Y/R/B/O	NT_034383	AC093433	76610900	3			AC073027	76420034		43389	21837	17593	82819
S/G/Y/R/B/O	NT_034383	AC093433	76610900	3			AL138797	76731734		17369	9208	4130	30707
S/G/Y/R/B/O	NT_034383	AC093433	76610900	3			AL500523	76731734		46734	0	13260	59994
S/G/Y/R/B/O	NT_034383	AC095030	76731734	3	chr1	NT_034383	AC093575	76873741	3	43791	0	0	43791
S/G/Y/R/B/O	NT_034383	AC095030	76731734	3			AC019136	76731734		68545	0	0	68545
S/G/Y/R/B/O	NT_034383	AC095030	76731734	3			AC026073	76731734		19897	0	38710	58607
S/G/Y/R/B/O	NT_034383	AC095030	76731734	3			AL500523	76873741		55855	0	0	55855
S/G/Y/R/B/O	NT_034383	AC093575	76873741	3	chr1	NT_034383	AC118549	76988891	3	0	1835	0	1835
S/G/Y/R/B/O	NT_034383	AC093575	76873741	3			AC026073	76873741		74875	3477	10158	88510
S/G/Y/R/B/O	NT_034383	AC118549	76988891	3	chr1	NT_034383	AC114487	77052336	3	2043	0	0	2043
S/G/Y/R/B/O	NT_034383	AC114487	77052336	3	chr1	NT_034383	AL390880	77211249	1	2186	0	0	2186
S/G/Y/R/B/O	NT_034383	AL390880	77211249	1	chr1	NT_034383	AC096948	77277386	3	45818	5564	0	51382
S/G/Y/R/B/O	NT_034383	AC096948	77277386	3	chr1	NT_034383	AC103591	77392982	3	40642	0	0	40642
S/G/Y/R/B/O	NT_034383	AC103591	77392982	3
S/G/Y/R/B/O	NT_034383	AC103591	77392982	3			AC025209	77211249		42964	5802	26358	75124
S/G/Y/R/B/O	NT_034383	AC103591	77392982	3			AC093118	77211249		83659	0	0	83659