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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_004873 | AL603890 | 12801571 | 3 | chr1 | NT_004873 | AL603749 | 12890377 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004873 | AL603890 | 12801571 | 3 |   |   | AL365443 | 12641480 | | 88390 | 0 | 0 | 88390 |
S/G/Y/R/B/O |
NT_004873 | AL603749 | 12890377 | 3 | chr1 | NT_004873 | AL354712 | 12990690 | 3 | 0 | 1937 | 0 | 1937 |
S/G/Y/R/B/O |
NT_004873 | AL603749 | 12890377 | 3 |   |   | AC019262 | 12890377 | | 24345 | 2049 | 6972 | 33366 |
S/G/Y/R/B/O |
NT_004873 | AL603749 | 12890377 | 3 |   |   | AL365443 | 12990690 | | 71618 | 0 | 0 | 71618 |
S/G/Y/R/B/O |
NT_004873 | AL603749 | 12890377 | 3 |   |   | AL451066 | 12990690 | | 38578 | 0 | 31164 | 69742 |
S/G/Y/R/B/O |
NT_004873 | AL354712 | 12990690 | 3 | chr1 | NT_004873 | AL359771 | 13110447 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004873 | AL354712 | 12990690 | 3 |   |   | AC019262 | 12801571 | | 49318 | 0 | 50821 | 100139 |
S/G/Y/R/B/O |
NT_004873 | AL354712 | 12990690 | 3 |   |   | AL451066 | 13110447 | | 21346 | 9017 | 26920 | 57283 |
S/G/Y/R/B/O |
NT_004873 | AL359771 | 13110447 | 3 | chr1 | NT_004873 | AL583942 | 13221160 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_004873 | AL583942 | 13221160 | 3 | chr1 | NT_004873 | AL031277 | 13226345 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004873 | AL031277 | 13226345 | 3 | chr1 | NT_004873 | AL031273 | 13375534 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL031277 | 13226345 | 3 |   |   | AC074234 | 13110447 | | 46785 | 1445 | 36590 | 84820 |
S/G/Y/R/B/O |
NT_004873 | AL031273 | 13375534 | 3 | chr1 | NT_004873 | AL033525 | 13432393 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL031273 | 13375534 | 3 |   |   | AC074234 | 13221160 | | 31148 | 0 | 17796 | 48944 |
S/G/Y/R/B/O |
NT_004873 | AL033525 | 13432393 | 3 | chr1 | NT_004873 | Z99291 | 13597194 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004873 | Z99291 | 13597194 | 3 | chr1 | NT_004873 | AL357873 | 13693702 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_004873 | AL357873 | 13693702 | 3 | chr1 | NT_004873 | AL359873 | 13835210 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004873 | AL357873 | 13693702 | 3 |   |   | AL359086 | 13693702 | | 49689 | 0 | 0 | 49689 |
S/G/Y/R/B/O |
NT_004873 | AL359873 | 13835210 | 3 | chr1 | NT_004873 | AL161427 | 13919955 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004873 | AL161427 | 13919955 | 3 | chr1 | NT_004873 | AL358793 | 13997045 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004873 | AL358793 | 13997045 | 3 | chr1 | NT_004873 | AL034395 | 14087479 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL034395 | 14087479 | 3 | chr1 | NT_004873 | AL031732 | 14196136 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004873 | AL031732 | 14196136 | 3 | chr1 | NT_004873 | AL031293 | 14265053 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004873 | AL031293 | 14265053 | 3 | chr1 | NT_004873 | AL445263 | 14370971 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004873 | AL031293 | 14265053 | 3 |   |   | AL391866 | 14196136 | | 83831 | 0 | 0 | 83831 |
S/G/Y/R/B/O |
NT_004873 | AL445263 | 14370971 | 3 | chr1 | NT_004873 | AL391215 | 14429393 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004873 | AL445263 | 14370971 | 3 |   |   | AL391866 | 14429393 | | 36680 | 0 | 22762 | 59442 |
S/G/Y/R/B/O |
NT_004873 | AL391215 | 14429393 | 3 | chr1 | NT_004873 | AL035405 | 14547944 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004873 | AL391215 | 14429393 | 3 |   |   | AC055792 | 14429393 | | 60109 | 0 | 18910 | 79019 |
S/G/Y/R/B/O |
NT_004873 | AL391215 | 14429393 | 3 |   |   | AL391866 | 14547944 | | 38979 | 0 | 0 | 38979 |
S/G/Y/R/B/O |
NT_004873 | AL035405 | 14547944 | 3 | chr1 | NT_004873 | AL391094 | 14714877 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004873 | AL035405 | 14547944 | 3 |   |   | AC055792 | 14370971 | | 55387 | 4490 | 9009 | 68886 |
S/G/Y/R/B/O |
NT_004873 | AL391094 | 14714877 | 3 | chr1 | NT_004873 | AL158174 | 14758547 | 3 | 0 | 0 | 1980 | 1980 |
S/G/Y/R/B/O |
NT_004873 | AL158174 | 14758547 | 3 | chr1 | NT_004873 | AL031283 | 14787657 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004873 | AL031283 | 14787657 | 3 | chr1 | NT_004873 | AL512883 | 14961620 | 3 | 24673 | 0 | 0 | 24673 |
S/G/Y/R/B/O |
NT_004873 | AL031283 | 14787657 | 3 |   |   | AC009056 | 14714877 | | 20388 | 2401 | 887 | 23676 |
S/G/Y/R/B/O |
NT_004873 | AL031283 | 14787657 | 3 |   |   | AL589992 | 14961620 | | 119899 | 0 | 0 | 119899 |
S/G/Y/R/B/O |
NT_004873 | AL512883 | 14961620 | 3 | chr1 | NT_004873 | AL121992 | 15041230 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL512883 | 14961620 | 3 |   |   | AC009056 | 14961620 | | 68853 | 2401 | 2808 | 74062 |
S/G/Y/R/B/O |
NT_004873 | AL512883 | 14961620 | 3 |   |   | AL589992 | 14787657 | | 104308 | 0 | 0 | 104308 |
S/G/Y/R/B/O |
NT_004873 | AL121992 | 15041230 | 3 | chr1 | NT_004873 | AL606758 | 15211529 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL121992 | 15041230 | 3 |   |   | AC009056 | 14787657 | | 51838 | 0 | 3539 | 55377 |
S/G/Y/R/B/O |
NT_004873 | AL121992 | 15041230 | 3 |   |   | AC058783 | 14787657 | | 10727 | 0 | 0 | 10727 |
S/G/Y/R/B/O |
NT_004873 | AL606758 | 15211529 | 3 | chr1 | NT_004873 | AL450998 | 15230070 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004873 | AL450998 | 15230070 | 3 | chr1 | NT_004873 | AL034555 | 15391178 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_004873 | AL450998 | 15230070 | 3 |   |   | AC058783 | 15230070 | | 58736 | 2194 | 0 | 60930 |
S/G/Y/R/B/O |
NT_004873 | AL034555 | 15391178 | 3 | chr1 | NT_004873 | AL096775 | 15476076 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL034555 | 15391178 | 3 |   |   | AL355994 | 15211529 | | 52505 | 0 | 0 | 52505 |
S/G/Y/R/B/O |
NT_004873 | AL096775 | 15476076 | 3 | chr1 | NT_004873 | AL451042 | 15552217 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004873 | AL096775 | 15476076 | 3 |   |   | AL355994 | 15230070 | | 11411 | 4059 | 0 | 15470 |
S/G/Y/R/B/O |
NT_004873 | AL451042 | 15552217 | 3 | chr1 | NT_004873 | AL109627 | 15638315 | 3 | 0 | 0 | 1515 | 1515 |
S/G/Y/R/B/O |
NT_004873 | AL109627 | 15638315 | 3 | chr1 | NT_004873 | AL358794 | 15757133 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004873 | AL358794 | 15757133 | 3 | chr1 | NT_004873 | AL669962 | 15880082 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004873 | AL669962 | 15880082 | 3 | chr1 | NT_004873 | AL137802 | 15886999 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004873 | AL137802 | 15886999 | 3 | chr1 | NT_004873 | AL355149 | 15973175 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004873 | AL137802 | 15886999 | 3 |   |   | AC015618 | 15886999 | | 42499 | 1178 | 21284 | 64961 |
S/G/Y/R/B/O |
NT_004873 | AL137802 | 15886999 | 3 |   |   | AL354666 | 15886999 | | 10397 | 0 | 0 | 10397 |
S/G/Y/R/B/O |
NT_004873 | AL137802 | 15886999 | 3 |   |   | AL355800 | 15973175 | | 47592 | 0 | 15535 | 63127 |
S/G/Y/R/B/O |
NT_004873 | AL137802 | 15886999 | 3 |   |   | AL713858 | 15880082 | | 71687 | 0 | 0 | 71687 |
S/G/Y/R/B/O |
NT_004873 | AL355149 | 15973175 | 3 | chr1 | NT_004873 | AL137798 | 16008564 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_004873 | AL355149 | 15973175 | 3 |   |   | AC015618 | 15880082 | | 31583 | 0 | 1726 | 33309 |
S/G/Y/R/B/O |
NT_004873 | AL355149 | 15973175 | 3 |   |   | AL354666 | 15886999 | | 25344 | 2237 | 5725 | 33306 |
S/G/Y/R/B/O |
NT_004873 | AL355149 | 15973175 | 3 |   |   | AL355800 | 15886999 | | 34286 | 0 | 0 | 34286 |
S/G/Y/R/B/O |
NT_004873 | AL355149 | 15973175 | 3 |   |   | AL713858 | 143162288 | | 37389 | 0 | 0 | 37389 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 | chr1 | NT_004873 | AL021920 | 16152705 | 3 | 31160 | 0 | 0 | 31160 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 | chr1 | NT_004873 | AC021338 | 16239706 | 1 | 46503 | 9939 | 11419 | 67861 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 |   |   | AC015618 | 143162288 | | 17312 | 0 | 15785 | 33097 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 |   |   | AL354666 | 144796712 | | 31741 | 0 | 54425 | 86166 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 |   |   | AL355800 | 15973175 | | 68303 | 3625 | 0 | 71928 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 |   |   | AL356581 | 15973175 | | 13991 | 0 | 63908 | 77899 |
S/G/Y/R/B/O |
NT_004873 | AL137798 | 16008564 | 3 |   |   | AL590643 | 143162288 | | 67527 | 725 | 0 | 68252 |
S/G/Y/R/B/O |
NT_004873 | AL021920 | 16152705 | 3 | chr1 | NT_004873 | AC021338 | 16239706 | 1 | 49154 | 14753 | 35018 | 98925 |
S/G/Y/R/B/O |
NT_004873 | AL021920 | 16152705 | 3 |   |   | AL356581 | 16008564 | | 16369 | 0 | 12419 | 28788 |
S/G/Y/R/B/O |
NT_004873 | AL021920 | 16152705 | 3 |   |   | AL592290 | 16008564 | | 18636 | 0 | 0 | 18636 |
S/G/Y/R/B/O |
NT_004873 | AL021920 | 16152705 | 3 |   |   | AL844158 | 16008564 | | 56566 | 4326 | 20327 | 81219 |
S/G/Y/R/B/O |
NT_004873 | AC021338 | 16239706 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_004873 | AC021338 | 16239706 | 1 | chr1 | NT_004873 | AL137798 | 16008564 | 3 | 46503 | 9939 | 11419 | 67861 |
S/G/Y/R/B/O |
NT_004873 | AC021338 | 16239706 | 1 |   |   | AL392186 | 230445578 | | 22021 | 5849 | 29345 | 57215 |
S/G/Y/R/B/O |
NT_004873 | AC021338 | 16239706 | 1 |   |   | AL844158 | 230445578 | | 47387 | 12285 | 24605 | 84277 |
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