Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004754

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004754	AL445231	116317286	3	chr1	NT_004754	AL139248	116444133	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004754	AL139248	116444133	3	chr1	NT_004754	AL391476	116446127	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004754	AL391476	116446127	3	chr1	NT_004754	AL365264	116615725	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL365264	116615725	3	chr1	NT_004754	AL360298	116632290	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL360298	116632290	3	chr1	NT_004754	AL358072	116740025	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL360298	116632290	3			AC053494	116444133		95197	3457	0	98654
S/G/Y/R/B/O	NT_004754	AL358072	116740025	3	chr1	NT_004754	AL157902	116866947	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004754	AL358072	116740025	3			AC022671	116740025		48043	7451	0	55494
S/G/Y/R/B/O	NT_004754	AL358072	116740025	3			AC053494	116740025		20095	0	0	20095
S/G/Y/R/B/O	NT_004754	AL157902	116866947	3	chr1	NT_004754	AL365331	116983344	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004754	AL157902	116866947	3			AC012347	116632290		21684	0	0	21684
S/G/Y/R/B/O	NT_004754	AL157902	116866947	3			AC022671	116632290		59619	1533	515	61667
S/G/Y/R/B/O	NT_004754	AL157902	116866947	3			AC084875	116632290		26134	4937	1837	32908
S/G/Y/R/B/O	NT_004754	AL365331	116983344	3	chr1	NT_004754	AL390877	117039665	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004754	AL365331	116983344	3			AC011646	116983344		25228	1337	1221	27786
S/G/Y/R/B/O	NT_004754	AL365331	116983344	3			AC012347	116983344		23175	0	37709	60884
S/G/Y/R/B/O	NT_004754	AL365331	116983344	3			AC084875	116983344		56981	2080	0	59061
S/G/Y/R/B/O	NT_004754	AL390877	117039665	3	chr1	NT_004754	AL122007	117189263	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL390877	117039665	3			AC011646	117039665		54751	12848	22878	90477
S/G/Y/R/B/O	NT_004754	AL390877	117039665	3			AC084875	117039665		46856	7238	0	54094
S/G/Y/R/B/O	NT_004754	AL122007	117189263	3	chr1	NT_004754	AL121993	117257164	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL121993	117257164	3	chr1	NT_004754	AL139345	117355126	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL139345	117355126	3	chr1	NT_004754	AL513191	117412989	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL139345	117355126	3			AL391806	117257164		17848	0	9164	27012
S/G/Y/R/B/O	NT_004754	AL513191	117412989	3	chr1	NT_004754	AL391557	117566719	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL513191	117412989	3			AL389926	117355126		103090	0	0	103090
S/G/Y/R/B/O	NT_004754	AL513191	117412989	3			AL391806	117566719		73046	2149	12053	87248
S/G/Y/R/B/O	NT_004754	AL391557	117566719	3	chr1	NT_004754	AL512823	117697334	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL512823	117697334	3	chr1	NT_004754	AL122006	117722185	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL122006	117722185	3	chr1	NT_004754	AL390117	117873476	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL390117	117873476	3	chr1	NT_004754	AL606843	117972636	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004754	AL390117	117873476	3			AC027610	117697334		23017	2011	3503	28531
S/G/Y/R/B/O	NT_004754	AL606843	117972636	3	chr1	NT_004754	AL139148	118066664	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004754	AL606843	117972636	3			AC027610	117972636		30765	5256	4992	41013
S/G/Y/R/B/O	NT_004754	AL606843	117972636	3			AC079932	117972636		10395	0	0	10395
S/G/Y/R/B/O	NT_004754	AL606843	117972636	3			AL133290	117972636		72143	0	0	72143
S/G/Y/R/B/O	NT_004754	AL139148	118066664	3	chr1	NT_004754	AL845532	118157178	3	0	0	1548	1548
S/G/Y/R/B/O	NT_004754	AL139148	118066664	3			AC079932	117873476		16385	0	24309	40694
S/G/Y/R/B/O	NT_004754	AL139148	118066664	3			AL133290	117873476		30698	2038	0	32736
S/G/Y/R/B/O	NT_004754	AL845532	118157178	3	chr1	NT_004754	AL357045	118181010	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL357045	118181010	3	chr1	NT_004754	AL139420	118320287	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL357045	118181010	3			AC025834	118066664		32312	0	3440	35752
S/G/Y/R/B/O	NT_004754	AL357045	118181010	3			AL390796	118320287		88699	5030	0	93729
S/G/Y/R/B/O	NT_004754	AL357045	118181010	3			AL446025	118320287		84948	0	0	84948
S/G/Y/R/B/O	NT_004754	AL139420	118320287	3	chr1	NT_004754	AL359823	118442309	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL139420	118320287	3			AC025834	118320287		73265	2622	15863	91750
S/G/Y/R/B/O	NT_004754	AL139420	118320287	3			AL390796	118442309		29073	0	0	29073
S/G/Y/R/B/O	NT_004754	AL359823	118442309	3	chr1	NT_004754	AL590288	118516993	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL590288	118516993	3	chr1	NT_004754	AL359915	118537783	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL359915	118537783	3	chr1	NT_004754	AL139346	118696841	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004754	AL139346	118696841	3	chr1	NT_004754	AL359553	118756403	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL359553	118756403	3	chr1	NT_004754	AL121995	118854657	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL121995	118854657	3	chr1	NT_004754	AL109966	118939923	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL109966	118939923	3	chr1	NT_004754	AL139251	119052439	3	0	0	0	0
S/G/Y/R/B/O	NT_004754	AL109966	118939923	3			AC013703	118756403		36241	0	4693	40934
S/G/Y/R/B/O	NT_004754	AL139251	119052439	3	chr1	NT_004754	AL589734	119105274	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL139251	119052439	3			AC013703	118854657		41732	0	1403	43135
S/G/Y/R/B/O	NT_004754	AL139251	119052439	3			AL592186	119105274		21537	0	0	21537
S/G/Y/R/B/O	NT_004754	AL589734	119105274	3	chr1	NT_004754	AL359752	119171056	3	0	0	100	100
S/G/Y/R/B/O	NT_004754	AL589734	119105274	3			AC013703	119105274		65645	0	0	65645
S/G/Y/R/B/O	NT_004754	AL589734	119105274	3			AL592186	119171056		64062	0	0	64062
S/G/Y/R/B/O	NT_004754	AL359752	119171056	3	chr1	NT_004754	AL512503	119308911	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004754	AL359752	119171056	3			AC013703	119171056		12246	0	0	12246
S/G/Y/R/B/O	NT_004754	AL359752	119171056	3			AC025241	119171056		25173	10649	17401	53223
S/G/Y/R/B/O	NT_004754	AL359752	119171056	3			AL592186	119105274		81998	0	0	81998
S/G/Y/R/B/O	NT_004754	AL512503	119308911	3	chr1	NT_004754	AL596222	119416523	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004754	AL512503	119308911	3	chr1	NT_004434	AC018381	141921549	1	15652	0	8660	24312
S/G/Y/R/B/O	NT_004754	AL512503	119308911	3	chr1	NT_034398	AC073223	142569494	1	16506	0	22201	38707
S/G/Y/R/B/O	NT_004754	AL512503	119308911	3	chr1	NT_004754	AC084789	119521679	1	24475	0	0	24475
S/G/Y/R/B/O	NT_004754	AL512503	119308911	3			AC019250	141921549		44441	0	0	44441
S/G/Y/R/B/O	NT_004754	AL512503	119308911	3			AC025241	141921549		70770	0	23114	93884
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3	chr1	NT_004754	AC084789	119521679	1	0	1994	0	1994
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3	chr1	NT_004434	AC018381	141921549	1	17910	0	0	17910
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3	chr1	NT_004434	AL049715	141776922	3	65817	0	0	65817
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3	chr1	NT_004434	AL359758	141693087	3	40422	0	0	40422
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3			AC019250	141921549		103651	2474	0	106125
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3			AC025241	141921549		11125	0	1325	12450
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3			AL390735	141693087		33280	0	0	33280
S/G/Y/R/B/O	NT_004754	AL596222	119416523	3			AL592307	119308911		53667	0	0	53667
S/G/Y/R/B/O	NT_004754	AC084789	119521679	1
S/G/Y/R/B/O	NT_004754	AC084789	119521679	1	chr1	NT_034401	AL022240	144796712	3	10463	0	52406	62869
S/G/Y/R/B/O	NT_004754	AC084789	119521679	1	chr1	NT_004754	AL512503	119308911	3	24475	0	0	24475
S/G/Y/R/B/O	NT_004754	AC084789	119521679	1			AC019250	141921549		18866	0	15338	34204