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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_004610 | AL031730 | 19096986 | 3 | chr1 | NT_004610 | AL391883 | 19145818 | 3 | 0 | 1974 | 0 | 1974 |
S/G/Y/R/B/O |
NT_004610 | AL031730 | 19096986 | 3 |   |   | AL391598 | 18778848 | | 35257 | 4683 | 0 | 39940 |
S/G/Y/R/B/O |
NT_004610 | AL391883 | 19145818 | 3 | chr1 | NT_004610 | AL358253 | 19270186 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL391883 | 19145818 | 3 |   |   | AL391598 | 19270186 | | 45565 | 14536 | 11744 | 71845 |
S/G/Y/R/B/O |
NT_004610 | AL391883 | 19145818 | 3 |   |   | AL391598 | 19270186 | | 45565 | 14536 | 11744 | 71845 |
S/G/Y/R/B/O |
NT_004610 | AL358253 | 19270186 | 3 | chr1 | NT_004610 | AL645485 | 19370013 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL358253 | 19270186 | 3 |   |   | AL360079 | 19270186 | | 57393 | 2529 | 12570 | 72492 |
S/G/Y/R/B/O |
NT_004610 | AL645485 | 19370013 | 3 | chr1 | NT_004610 | AL158172 | 19410491 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL158172 | 19410491 | 3 | chr1 | NT_004610 | Z98257 | 19507242 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | Z98257 | 19507242 | 3 | chr1 | NT_004610 | AL020998 | 19642713 | 3 | 0 | 0 | 104 | 104 |
S/G/Y/R/B/O |
NT_004610 | AL020998 | 19642713 | 3 | chr1 | NT_004610 | AL139254 | 19723376 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL139254 | 19723376 | 1 | chr1 | NT_004610 | AL391357 | 19840198 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 | chr1 | NT_004610 | AL663074 | 20035274 | 3 | 0 | 1986 | 0 | 1986 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 |   |   | AC022786 | 19507242 | | 58010 | 1756 | 3815 | 63581 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 |   |   | AC025224 | 19507242 | | 47089 | 5266 | 32323 | 84678 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 |   |   | AL138784 | 19507242 | | 25006 | 0 | 0 | 25006 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 |   |   | AL353647 | 19507242 | | 25002 | 0 | 0 | 25002 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 |   |   | AL356300 | 19507242 | | 54327 | 0 | 31809 | 86136 |
S/G/Y/R/B/O |
NT_004610 | AL391357 | 19840198 | 3 |   |   | AL365439 | 19507242 | | 86613 | 0 | 0 | 86613 |
S/G/Y/R/B/O |
NT_004610 | AL663074 | 20035274 | 3 | chr1 | NT_004610 | AL606477 | 20119055 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL663074 | 20035274 | 3 |   |   | AC022786 | 20035274 | | 36099 | 7354 | 24207 | 67660 |
S/G/Y/R/B/O |
NT_004610 | AL663074 | 20035274 | 3 |   |   | AL138784 | 20035274 | | 85768 | 0 | 0 | 85768 |
S/G/Y/R/B/O |
NT_004610 | AL663074 | 20035274 | 3 |   |   | AL353647 | 20035274 | | 81633 | 0 | 0 | 81633 |
S/G/Y/R/B/O |
NT_004610 | AL663074 | 20035274 | 3 |   |   | AL365439 | 20035274 | | 70544 | 0 | 0 | 70544 |
S/G/Y/R/B/O |
NT_004610 | AL606477 | 20119055 | 3 | chr1 | NT_004610 | AL358392 | 20257020 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL358392 | 20257020 | 3 | chr1 | NT_004610 | AL627311 | 20333261 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL627311 | 20333261 | 3 | chr1 | NT_004610 | AL672037 | 20500434 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_004610 | AL672037 | 20500434 | 3 | chr1 | NT_004610 | AL031005 | 20536008 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004610 | AL031005 | 20536008 | 3 | chr1 | NT_004610 | AL031728 | 20643916 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL031005 | 20536008 | 3 |   |   | AC068751 | 20333261 | | 46036 | 0 | 0 | 46036 |
S/G/Y/R/B/O |
NT_004610 | AL031728 | 20643916 | 3 | chr1 | NT_004610 | AL365182 | 20716365 | 3 | 0 | 1486 | 0 | 1486 |
S/G/Y/R/B/O |
NT_004610 | AL031728 | 20643916 | 3 |   |   | AC068751 | 20500434 | | 67473 | 0 | 6060 | 73533 |
S/G/Y/R/B/O |
NT_004610 | AL365182 | 20716365 | 3 | chr1 | NT_004610 | AL592309 | 20772974 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL592309 | 20772974 | 3 | chr1 | NT_004610 | AL359815 | 20977649 | 3 | 40650 | 0 | 0 | 40650 |
S/G/Y/R/B/O |
NT_004610 | AL592309 | 20772974 | 3 |   |   | AC023093 | 20643916 | | 18815 | 0 | 9021 | 27836 |
S/G/Y/R/B/O |
NT_004610 | AL592309 | 20772974 | 3 |   |   | AC026565 | 20643916 | | 162114 | 18095 | 12880 | 193089 |
S/G/Y/R/B/O |
NT_004610 | AL592309 | 20772974 | 3 |   |   | AL357252 | 20643916 | | 94664 | 0 | 0 | 94664 |
S/G/Y/R/B/O |
NT_004610 | AL592309 | 20772974 | 3 |   |   | AL391000 | 20977649 | | 48827 | 5053 | 9966 | 63846 |
S/G/Y/R/B/O |
NT_004610 | AL592309 | 20772974 | 3 |   |   | AL391068 | 20977649 | | 97300 | 2215 | 8567 | 108082 |
S/G/Y/R/B/O |
NT_004610 | AL359815 | 20977649 | 3 | chr1 | NT_004610 | AL590103 | 21086569 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL359815 | 20977649 | 3 |   |   | AC023093 | 20977649 | | 104985 | 7019 | 15542 | 127546 |
S/G/Y/R/B/O |
NT_004610 | AL359815 | 20977649 | 3 |   |   | AC026565 | 20977649 | | 36790 | 3471 | 0 | 40261 |
S/G/Y/R/B/O |
NT_004610 | AL359815 | 20977649 | 3 |   |   | AL357252 | 20977649 | | 98498 | 0 | 0 | 98498 |
S/G/Y/R/B/O |
NT_004610 | AL590103 | 21086569 | 3 | chr1 | NT_004610 | AL590556 | 21259731 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL590103 | 21086569 | 3 |   |   | AC020565 | 20772974 | | 49184 | 4359 | 61057 | 114600 |
S/G/Y/R/B/O |
NT_004610 | AL590103 | 21086569 | 3 |   |   | AC023093 | 20772974 | | 27366 | 0 | 3767 | 31133 |
S/G/Y/R/B/O |
NT_004610 | AL590556 | 21259731 | 3 | chr1 | NT_004610 | AL031281 | 21376226 | 3 | 0 | 1984 | 0 | 1984 |
S/G/Y/R/B/O |
NT_004610 | AL590556 | 21259731 | 3 |   |   | AC020565 | 21259731 | | 20989 | 0 | 0 | 20989 |
S/G/Y/R/B/O |
NT_004610 | AL031281 | 21376226 | 3 | chr1 | NT_004610 | AL445253 | 21503586 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL445253 | 21503586 | 3 | chr1 | NT_004610 | AL031279 | 21519015 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004610 | AL031279 | 21519015 | 3 | chr1 | NT_004610 | AL591122 | 21652643 | 3 | 0 | 1520 | 0 | 1520 |
S/G/Y/R/B/O |
NT_004610 | AL591122 | 21652643 | 3 | chr1 | NT_004610 | AL358788 | 21757294 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004610 | AL358788 | 21757294 | 3 | chr1 | NT_004610 | AL035703 | 21832276 | 3 | 0 | 1944 | 0 | 1944 |
S/G/Y/R/B/O |
NT_004610 | AL035703 | 21832276 | 3 | chr1 | NT_004610 | AL158086 | 21990973 | 1 | 0 | 0 | 21299 | 21299 |
S/G/Y/R/B/O |
NT_004610 | AL035703 | 21832276 | 3 |   |   | AC025929 | 21652643 | | 111762 | 5565 | 17331 | 134658 |
S/G/Y/R/B/O |
NT_004610 | AL158086 | 21990973 | 1 | chr1 | NT_004610 | AL611946 | 22040093 | 1 | 67546 | 2183 | 0 | 69729 |
S/G/Y/R/B/O |
NT_004610 | AL158086 | 21990973 | 1 |   |   | AC013611 | 21757294 | | 58702 | 0 | 8422 | 67124 |
S/G/Y/R/B/O |
NT_004610 | AL158086 | 21990973 | 1 |   |   | AC013611 | 21757294 | | 58702 | 0 | 8422 | 67124 |
S/G/Y/R/B/O |
NT_004610 | AL158086 | 21990973 | 1 |   |   | AC025929 | 21757294 | | 53664 | 1946 | 10651 | 66261 |
S/G/Y/R/B/O |
NT_004610 | AL158086 | 21990973 | 1 |   |   | AC025929 | 21757294 | | 53664 | 1946 | 10651 | 66261 |
S/G/Y/R/B/O |
NT_004610 | AL611946 | 22040093 | 1 | chr1 | NT_004610 | AL512444 | 22117729 | 3 | 63347 | 0 | 0 | 63347 |
S/G/Y/R/B/O |
NT_004610 | AL611946 | 22040093 | 1 |   |   | AC013611 | 22040093 | | 125108 | 5140 | 35885 | 166133 |
S/G/Y/R/B/O |
NT_004610 | AL611946 | 22040093 | 1 |   |   | AC025929 | 22040093 | | 17741 | 4127 | 10674 | 32542 |
S/G/Y/R/B/O |
NT_004610 | AL512444 | 22117729 | 3 | chr1 | NT_004610 | AL035704 | 22244318 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_004610 | AL512444 | 22117729 | 3 |   |   | AC013611 | 22117729 | | 60888 | 2316 | 0 | 63204 |
S/G/Y/R/B/O |
NT_004610 | AL512444 | 22117729 | 3 |   |   | AC067727 | 22117729 | | 14129 | 0 | 0 | 14129 |
S/G/Y/R/B/O |
NT_004610 | AL035704 | 22244318 | 3 | chr1 | NT_004610 | AL355534 | 22356272 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL035704 | 22244318 | 3 |   |   | AC067727 | 22040093 | | 47628 | 3470 | 7287 | 58385 |
S/G/Y/R/B/O |
NT_004610 | AL035704 | 22244318 | 3 |   |   | AL157403 | 22040093 | | 81704 | 5727 | 4677 | 92108 |
S/G/Y/R/B/O |
NT_004610 | AL355534 | 22356272 | 3 | chr1 | NT_004610 | AL031428 | 22373758 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL031428 | 22373758 | 3 | chr1 | NT_004610 | AL161672 | 22474609 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004610 | AL031428 | 22373758 | 3 |   |   | AC068311 | 22117729 | | 15810 | 25115 | 11747 | 52672 |
S/G/Y/R/B/O |
NT_004610 | AL031428 | 22373758 | 3 |   |   | AL831787 | 22474609 | | 72514 | 0 | 0 | 72514 |
S/G/Y/R/B/O |
NT_004610 | AL161672 | 22474609 | 3 | chr1 | NT_004610 | AL049576 | 22509028 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL049576 | 22509028 | 3 | chr1 | NT_004610 | AL353585 | 22575467 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004610 | AL049576 | 22509028 | 3 |   |   | AL445206 | 22373758 | | 30302 | 0 | 14597 | 44899 |
S/G/Y/R/B/O |
NT_004610 | AL049576 | 22509028 | 3 |   |   | AL831787 | 22373758 | | 21146 | 0 | 3880 | 25026 |
S/G/Y/R/B/O |
NT_004610 | AL353585 | 22575467 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_004610 | AL353585 | 22575467 | 3 |   |   | AL445206 | 22373758 | | 23754 | 0 | 0 | 23754 |
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