Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004610

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004610	AL031730	19096986	3	chr1	NT_004610	AL391883	19145818	3	0	1974	0	1974
S/G/Y/R/B/O	NT_004610	AL031730	19096986	3			AL391598	18778848		35257	4683	0	39940
S/G/Y/R/B/O	NT_004610	AL391883	19145818	3	chr1	NT_004610	AL358253	19270186	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL391883	19145818	3			AL391598	19270186		45565	14536	11744	71845
S/G/Y/R/B/O	NT_004610	AL391883	19145818	3			AL391598	19270186		45565	14536	11744	71845
S/G/Y/R/B/O	NT_004610	AL358253	19270186	3	chr1	NT_004610	AL645485	19370013	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL358253	19270186	3			AL360079	19270186		57393	2529	12570	72492
S/G/Y/R/B/O	NT_004610	AL645485	19370013	3	chr1	NT_004610	AL158172	19410491	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL158172	19410491	3	chr1	NT_004610	Z98257	19507242	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	Z98257	19507242	3	chr1	NT_004610	AL020998	19642713	3	0	0	104	104
S/G/Y/R/B/O	NT_004610	AL020998	19642713	3	chr1	NT_004610	AL139254	19723376	1	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL139254	19723376	1	chr1	NT_004610	AL391357	19840198	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3	chr1	NT_004610	AL663074	20035274	3	0	1986	0	1986
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3			AC022786	19507242		58010	1756	3815	63581
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3			AC025224	19507242		47089	5266	32323	84678
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3			AL138784	19507242		25006	0	0	25006
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3			AL353647	19507242		25002	0	0	25002
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3			AL356300	19507242		54327	0	31809	86136
S/G/Y/R/B/O	NT_004610	AL391357	19840198	3			AL365439	19507242		86613	0	0	86613
S/G/Y/R/B/O	NT_004610	AL663074	20035274	3	chr1	NT_004610	AL606477	20119055	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL663074	20035274	3			AC022786	20035274		36099	7354	24207	67660
S/G/Y/R/B/O	NT_004610	AL663074	20035274	3			AL138784	20035274		85768	0	0	85768
S/G/Y/R/B/O	NT_004610	AL663074	20035274	3			AL353647	20035274		81633	0	0	81633
S/G/Y/R/B/O	NT_004610	AL663074	20035274	3			AL365439	20035274		70544	0	0	70544
S/G/Y/R/B/O	NT_004610	AL606477	20119055	3	chr1	NT_004610	AL358392	20257020	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL358392	20257020	3	chr1	NT_004610	AL627311	20333261	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL627311	20333261	3	chr1	NT_004610	AL672037	20500434	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004610	AL672037	20500434	3	chr1	NT_004610	AL031005	20536008	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004610	AL031005	20536008	3	chr1	NT_004610	AL031728	20643916	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL031005	20536008	3			AC068751	20333261		46036	0	0	46036
S/G/Y/R/B/O	NT_004610	AL031728	20643916	3	chr1	NT_004610	AL365182	20716365	3	0	1486	0	1486
S/G/Y/R/B/O	NT_004610	AL031728	20643916	3			AC068751	20500434		67473	0	6060	73533
S/G/Y/R/B/O	NT_004610	AL365182	20716365	3	chr1	NT_004610	AL592309	20772974	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL592309	20772974	3	chr1	NT_004610	AL359815	20977649	3	40650	0	0	40650
S/G/Y/R/B/O	NT_004610	AL592309	20772974	3			AC023093	20643916		18815	0	9021	27836
S/G/Y/R/B/O	NT_004610	AL592309	20772974	3			AC026565	20643916		162114	18095	12880	193089
S/G/Y/R/B/O	NT_004610	AL592309	20772974	3			AL357252	20643916		94664	0	0	94664
S/G/Y/R/B/O	NT_004610	AL592309	20772974	3			AL391000	20977649		48827	5053	9966	63846
S/G/Y/R/B/O	NT_004610	AL592309	20772974	3			AL391068	20977649		97300	2215	8567	108082
S/G/Y/R/B/O	NT_004610	AL359815	20977649	3	chr1	NT_004610	AL590103	21086569	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL359815	20977649	3			AC023093	20977649		104985	7019	15542	127546
S/G/Y/R/B/O	NT_004610	AL359815	20977649	3			AC026565	20977649		36790	3471	0	40261
S/G/Y/R/B/O	NT_004610	AL359815	20977649	3			AL357252	20977649		98498	0	0	98498
S/G/Y/R/B/O	NT_004610	AL590103	21086569	3	chr1	NT_004610	AL590556	21259731	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL590103	21086569	3			AC020565	20772974		49184	4359	61057	114600
S/G/Y/R/B/O	NT_004610	AL590103	21086569	3			AC023093	20772974		27366	0	3767	31133
S/G/Y/R/B/O	NT_004610	AL590556	21259731	3	chr1	NT_004610	AL031281	21376226	3	0	1984	0	1984
S/G/Y/R/B/O	NT_004610	AL590556	21259731	3			AC020565	21259731		20989	0	0	20989
S/G/Y/R/B/O	NT_004610	AL031281	21376226	3	chr1	NT_004610	AL445253	21503586	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL445253	21503586	3	chr1	NT_004610	AL031279	21519015	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004610	AL031279	21519015	3	chr1	NT_004610	AL591122	21652643	3	0	1520	0	1520
S/G/Y/R/B/O	NT_004610	AL591122	21652643	3	chr1	NT_004610	AL358788	21757294	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004610	AL358788	21757294	3	chr1	NT_004610	AL035703	21832276	3	0	1944	0	1944
S/G/Y/R/B/O	NT_004610	AL035703	21832276	3	chr1	NT_004610	AL158086	21990973	1	0	0	21299	21299
S/G/Y/R/B/O	NT_004610	AL035703	21832276	3			AC025929	21652643		111762	5565	17331	134658
S/G/Y/R/B/O	NT_004610	AL158086	21990973	1	chr1	NT_004610	AL611946	22040093	1	67546	2183	0	69729
S/G/Y/R/B/O	NT_004610	AL158086	21990973	1			AC013611	21757294		58702	0	8422	67124
S/G/Y/R/B/O	NT_004610	AL158086	21990973	1			AC013611	21757294		58702	0	8422	67124
S/G/Y/R/B/O	NT_004610	AL158086	21990973	1			AC025929	21757294		53664	1946	10651	66261
S/G/Y/R/B/O	NT_004610	AL158086	21990973	1			AC025929	21757294		53664	1946	10651	66261
S/G/Y/R/B/O	NT_004610	AL611946	22040093	1	chr1	NT_004610	AL512444	22117729	3	63347	0	0	63347
S/G/Y/R/B/O	NT_004610	AL611946	22040093	1			AC013611	22040093		125108	5140	35885	166133
S/G/Y/R/B/O	NT_004610	AL611946	22040093	1			AC025929	22040093		17741	4127	10674	32542
S/G/Y/R/B/O	NT_004610	AL512444	22117729	3	chr1	NT_004610	AL035704	22244318	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004610	AL512444	22117729	3			AC013611	22117729		60888	2316	0	63204
S/G/Y/R/B/O	NT_004610	AL512444	22117729	3			AC067727	22117729		14129	0	0	14129
S/G/Y/R/B/O	NT_004610	AL035704	22244318	3	chr1	NT_004610	AL355534	22356272	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL035704	22244318	3			AC067727	22040093		47628	3470	7287	58385
S/G/Y/R/B/O	NT_004610	AL035704	22244318	3			AL157403	22040093		81704	5727	4677	92108
S/G/Y/R/B/O	NT_004610	AL355534	22356272	3	chr1	NT_004610	AL031428	22373758	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL031428	22373758	3	chr1	NT_004610	AL161672	22474609	3	0	0	100	100
S/G/Y/R/B/O	NT_004610	AL031428	22373758	3			AC068311	22117729		15810	25115	11747	52672
S/G/Y/R/B/O	NT_004610	AL031428	22373758	3			AL831787	22474609		72514	0	0	72514
S/G/Y/R/B/O	NT_004610	AL161672	22474609	3	chr1	NT_004610	AL049576	22509028	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL049576	22509028	3	chr1	NT_004610	AL353585	22575467	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL049576	22509028	3			AL445206	22373758		30302	0	14597	44899
S/G/Y/R/B/O	NT_004610	AL049576	22509028	3			AL831787	22373758		21146	0	3880	25026
S/G/Y/R/B/O	NT_004610	AL353585	22575467	3
S/G/Y/R/B/O	NT_004610	AL353585	22575467	3			AL445206	22373758		23754	0	0	23754