Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - Clone Overlaps - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Overlap Page Whole Chromosome Single Contigs

Line color code:

  • White: overlap with immediately succeeding clone
  • Green: overlap with clone in same contig
  • Pink: overlap with clone in same chromosome, different contig
  • Red: overlap with clone on different chromosome
  • Yellow: overlap with clone not used in assembly

NT_034471 NT_037484 NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917
NT_028054 NT_032967 NT_021937 NT_004873 NT_030584 NT_029218 NT_004610 NT_004391
NT_004782 NT_037485 NT_028053 NT_004538 NT_034379 NT_037486 NT_034429 NT_004511
NT_037487 NT_004852 NT_032977 NT_029223 NT_029865 NT_004636 NT_032948 NT_004464
NT_034383 NT_004483 NT_037488 NT_004902 NT_034385 NT_026943 NT_034386 NT_029231
NT_004658 NT_004686 NT_037489 NT_021979 NT_034389 NT_037490 NT_034392 NT_028050
NT_030567 NT_021977 NT_029860 NT_037491 NT_019273 NT_004754 NT_022052 NT_022071
NT_004434 NT_037492 NT_037493 NT_037494 NT_034398 NT_034400 NT_034401 NT_034402
NT_034403 NT_037495 NT_032962 NT_037496 NT_021907 NT_037497 NT_004858 NT_037498
NT_004668 NT_037499 NT_029874 NT_004487 NT_037500 NT_021905 NT_004671 NT_029862
NT_034408 NT_034409 NT_037501 NT_034410 NT_034411 NT_021877 NT_034412 NT_004612
NT_037503 NT_021953 NT_004861 NT_004525 NT_004559 NT_031728 NT_021973 NT_004753
NT_004433 NT_030561 NT_004836 NT_004734 NT_004536 NT_032964 NT_037504 NT_037505
NT_031730 NT_029870 NT_032969 NT_032968


  NT_004852
 
LinksContig1Acc1Start1PhsChr2Contig2Acc2Start2PhsStrong OverlapMedium OverlapWeak OverlapTotal Overlap
S/G/Y/R/B/O NT_004852AL606465384222183chr1NT_004852AL3554773853632130000
S/G/Y/R/B/O NT_004852AL606465384222183  AL139015381536581254803734749895
S/G/Y/R/B/O NT_004852AL355477385363213chr1NT_004852AL3560553859950830199801998
S/G/Y/R/B/O NT_004852AL355477385363213  AC02693638153658292713647130734225
S/G/Y/R/B/O NT_004852AL356055385995083chr1NT_004852AL4420713869479630199801998
S/G/Y/R/B/O NT_004852AL356055385995083  AC0269363859950859187104561331382956
S/G/Y/R/B/O NT_004852AL442071386947963chr1NT_004852AL1378533881409130199701997
S/G/Y/R/B/O NT_004852AL137853388140913chr1NT_004852AL3652773892594430199901999
S/G/Y/R/B/O NT_004852AL137853388140913  AC0245113859950810678000106780
S/G/Y/R/B/O NT_004852AL137853388140913  AL7139933869479611367600113676
S/G/Y/R/B/O NT_004852AL365277389259443chr1NT_004852AC0738353897072118204008204
S/G/Y/R/B/O NT_004852AL365277389259443  AL71399338814091467000046700
S/G/Y/R/B/O NT_004852AC073835389707211chr1NT_004852AL84528939040458392620379113053
S/G/Y/R/B/O NT_004852AC073835389707211chr1NT_004852AL0354043905672731631534792272342517
S/G/Y/R/B/O NT_004852AC073835389707211  AC02451138814091197820610925891
S/G/Y/R/B/O NT_004852AC073835389707211  AL033526388140915050002554876048
S/G/Y/R/B/O NT_004852AC073835389707211  AL71399338925944675330610973642
S/G/Y/R/B/O NT_004852AL845289390404583chr1NT_004852AL0354043905672730000
S/G/Y/R/B/O NT_004852AL035404390567273chr1NT_004852AL0498243920913930000
S/G/Y/R/B/O NT_004852AL035404390567273chr1NT_004852AC0738353897072111631534792272342517
S/G/Y/R/B/O NT_004852AL035404390567273  AC06788438970721803114973115186435
S/G/Y/R/B/O NT_004852AL035404390567273  AL354888389707212817101156639737
S/G/Y/R/B/O NT_004852AL049824392091393chr1NT_004852AL03352739228822300100100
S/G/Y/R/B/O NT_004852AL049824392091393  AL35488839228822197760019776
S/G/Y/R/B/O NT_004852AL033527392288223chr1NT_004852AL6630703939321930199801998
S/G/Y/R/B/O NT_004852AL033527392288223  AC0250023922882226145191581860763910
S/G/Y/R/B/O NT_004852AL033527392288223  AC067884392288222924724491169043386
S/G/Y/R/B/O NT_004852AL033527392288223  AL354888392091395767301392771600
S/G/Y/R/B/O NT_004852AL663070393932193chr1NT_004852AL5125993950826230199801998
S/G/Y/R/B/O NT_004852AL663070393932193  AC0250023939321918368114051723347006
S/G/Y/R/B/O NT_004852AL512599395082623chr1NT_004852AL9295673966401232000002000
S/G/Y/R/B/O NT_004852AL929567396640123chr1NT_004852AL3564243966765932000002000
S/G/Y/R/B/O NT_004852AL356424396676593chr1NT_004852AL0503413969500430000
S/G/Y/R/B/O NT_004852AL050341396950043chr1NT_004852AL0319853979658930000
S/G/Y/R/B/O NT_004852AL050341396950043  AC02599439664012103830335213735
S/G/Y/R/B/O NT_004852AL031985397965893chr1NT_004852AL6038393993622630199801998
S/G/Y/R/B/O NT_004852AL031985397965893  AC025994396640124851275933987695981
S/G/Y/R/B/O NT_004852AL603839399362263chr1NT_004852AL3563793999670430000
S/G/Y/R/B/O NT_004852AL356379399967043chr1NT_004852AL0312894006166430000
S/G/Y/R/B/O NT_004852AL031289400616643chr1NT_004852AL3549144019151430199701997
S/G/Y/R/B/O NT_004852AL354914401915143chr1NT_004852AC1196774023628830199801998
S/G/Y/R/B/O NT_004852AC119677402362883chr1NT_004852AL3917304040468530200002000
S/G/Y/R/B/O NT_004852AL391730404046853chr1NT_004852AL1105024050137730199601996
S/G/Y/R/B/O NT_004852AL110502405013773chr1NT_004852AL6064844063602630000
S/G/Y/R/B/O NT_004852AL110502405013773  AL16226240501377102260407314299
S/G/Y/R/B/O NT_004852AL606484406360263chr1NT_004852AC0931514071957930015011501
S/G/Y/R/B/O NT_004852AL606484406360263  AL16226240719579117922368014160
S/G/Y/R/B/O NT_004852AC093151407195793chr1NT_004852AL4459334090585530199801998
S/G/Y/R/B/O NT_004852AC093151407195793  AL663046406360264175503820079955
S/G/Y/R/B/O NT_004852AL445933409058553chr1NT_004852AC1196764105800830199801998
S/G/Y/R/B/O NT_004852AL445933409058553  AL13612741058008932120528698498
S/G/Y/R/B/O NT_004852AL445933409058553  AL354974410580085126403749888762
S/G/Y/R/B/O NT_004852AC119676410580083chr1NT_004852AL4510064121658132370002370
S/G/Y/R/B/O NT_004852AC119676410580083  AC01357941058008469081974048882
S/G/Y/R/B/O NT_004852AC119676410580083  AL13612741058008101640010164
S/G/Y/R/B/O NT_004852AL451006412165813chr1NT_004852AL3564554130733030199801998
S/G/Y/R/B/O NT_004852AL451006412165813  AC013579412165815980783931190180101
S/G/Y/R/B/O NT_004852AL356455413073303chr1NT_004852AC1052684133735730199301993
S/G/Y/R/B/O NT_004852AL356455413073303  AC01357941307330227778162030939
S/G/Y/R/B/O NT_004852AC105268413373573chr1NT_004852AL1582164148233630199501995
S/G/Y/R/B/O NT_004852AC105268413373573  AC00802241216581391732554141043137
S/G/Y/R/B/O NT_004852AL158216414823363chr1NT_004852AC1144924153402830000
S/G/Y/R/B/O NT_004852AL158216414823363  AC00802241307330313270031327
S/G/Y/R/B/O NT_004852AC114492415340283chr1NT_004852AC096540416703653460660046066
S/G/Y/R/B/O NT_004852AC114492415340283  AC0535094133735743404121813630991894
S/G/Y/R/B/O NT_004852AC114492415340283  AL359754416703651734603291350259
S/G/Y/R/B/O NT_004852AC096540416703653chr1NT_004852AL5133314183872230198401984
S/G/Y/R/B/O NT_004852AL513331418387223chr1NT_004852AL4456694190409532000002000
S/G/Y/R/B/O NT_004852AL513331418387223  AL355801416703652327802151044788
S/G/Y/R/B/O NT_004852AL445669419040953chr1NT_004852AL1387884205773530199201992
S/G/Y/R/B/O NT_004852AL138788420577353chr1NT_004852AC0984844212325430199601996
S/G/Y/R/B/O NT_004852AC098484421232543chr1NT_004852AL5123534228309030199701997
S/G/Y/R/B/O NT_004852AL512353422830903chr1NT_004852AC0997954236279430199401994
S/G/Y/R/B/O NT_004852AL512353422830903  AC02333142283090316440196033604
S/G/Y/R/B/O NT_004852AC099795423627943chr1NT_004852AC11855842480386309630963
S/G/Y/R/B/O NT_004852AC099795423627943  AC02333142362794642040116565369
S/G/Y/R/B/O NT_004852AC099795423627943  AC02333142362794642040116565369
S/G/Y/R/B/O NT_004852AC118558424803863chr1NT_004852AC025504425322111507280050728
S/G/Y/R/B/O NT_004852AC118558424803863  AL16163742362794235150023515
S/G/Y/R/B/O NT_004852AC025504425322111chr1NT_004852AL139138425761833576454991117763813
S/G/Y/R/B/O NT_004852AC025504425322111chr1NT_004852AC093420426532003240790024079
S/G/Y/R/B/O NT_004852AC025504425322111  AL161637425761833890916313623461456
S/G/Y/R/B/O NT_004852AC025504425322111  AL3915544257618311096120071858641689
S/G/Y/R/B/O NT_004852AL139138425761833chr1NT_004852AC0934204265320030199901999
S/G/Y/R/B/O NT_004852AL139138425761833  AL16163742653200149545667020621
S/G/Y/R/B/O NT_004852AL139138425761833  AL39155442653200128452542828623673
S/G/Y/R/B/O NT_004852AC093420426532003chr1NT_004852AL139289428449653597290059729
S/G/Y/R/B/O NT_004852AC093420426532003chr1NT_004852AC025504425322111240790024079
S/G/Y/R/B/O NT_004852AC093420426532003  AL356007428449655441250112192881351
S/G/Y/R/B/O NT_004852AL139289428449653chr1NT_004852AL5838624287561130400004000
S/G/Y/R/B/O NT_004852AL139289428449653  AL35551942653200208960020896
S/G/Y/R/B/O NT_004852AL139289428449653  AL356007426532002627520431043438752
S/G/Y/R/B/O NT_004852AL583862428756113chr1NT_004852AC092815430241193338620033862
S/G/Y/R/B/O NT_004852AL583862428756113  AL35551942844965170471521012672188353
S/G/Y/R/B/O NT_004852AL583862428756113  AL35551942844965170471521012672188353
S/G/Y/R/B/O NT_004852AL583862428756113  AL5127864284496586182057315143497
S/G/Y/R/B/O NT_004852AL583862428756113  AL5127864284496586182057315143497
S/G/Y/R/B/O NT_004852AC092815430241193chr1NT_004852AL4510624315077030199601996
S/G/Y/R/B/O NT_004852AC092815430241193  AC011772428449653022505025180476
S/G/Y/R/B/O NT_004852AC092815430241193  AL51278643150770335490033549
S/G/Y/R/B/O NT_004852AL451062431507703chr1NT_004852AC004950432906403184880018488
S/G/Y/R/B/O NT_004852AL451062431507703  AC0051934329064010839000108390
S/G/Y/R/B/O NT_004852AL451062431507703  AC01177243290640170760216519241
S/G/Y/R/B/O NT_004852AL451062431507703  AL59254843024119402450040245
S/G/Y/R/B/O NT_004852AC004950432906403chr1NT_004852AL357079433656453195940019594
S/G/Y/R/B/O NT_004852AC004950432906403  AC00505143024119175640410621670
S/G/Y/R/B/O NT_004852AC004950432906403  AL59254843150770757100075710
S/G/Y/R/B/O NT_004852AL357079433656453chr1NT_004852AL1392204345280430199601996
S/G/Y/R/B/O NT_004852AL357079433656453  AC00503843290640132896039623172519
S/G/Y/R/B/O NT_004852AL357079433656453  AC00503843290640132896039623172519
S/G/Y/R/B/O NT_004852AL357079433656453  AC005051432906401639201351329905
S/G/Y/R/B/O NT_004852AL139220434528043chr1NT_004852AL3566534358453330015411541
S/G/Y/R/B/O NT_004852AL139220434528043  AC00503843452804186495011607198102
S/G/Y/R/B/O NT_004852AL139220434528043  AC00503843452804186495011607198102
S/G/Y/R/B/O NT_004852AL139220434528043  AC00508743452804274742272933939085
S/G/Y/R/B/O NT_004852AL139220434528043  AC00508743452804274742272933939085
S/G/Y/R/B/O NT_004852AL356653435845333chr1NT_004852AL3598394359871730000
S/G/Y/R/B/O NT_004852AL359839435987173chr1NT_004852AL0354174362936630000
S/G/Y/R/B/O NT_004852AL359839435987173  AC00508743452804214910144022931
S/G/Y/R/B/O NT_004852AL359839435987173  AC00508743452804214910144022931
S/G/Y/R/B/O NT_004852AL035417436293663chr1NT_004852AL3907764375221430199601996
S/G/Y/R/B/O NT_004852AL035417436293663  AC0050434345280412290700122907
S/G/Y/R/B/O NT_004852AL390776437522143chr1NT_004852AL3593734383664232000002000
S/G/Y/R/B/O NT_004852AL390776437522143  AC00425443752214638170063817
S/G/Y/R/B/O NT_004852AL390776437522143  AC00504343752214226910022691
S/G/Y/R/B/O NT_004852AL390776437522143  AC02395343752214710734456128976818
S/G/Y/R/B/O NT_004852AL359373438366423chr1NT_004852AL5962254395228030199801998
S/G/Y/R/B/O NT_004852AL359373438366423  AC00425443836642319290031929
S/G/Y/R/B/O NT_004852AL359373438366423  AC02395343836642403184925402149264
S/G/Y/R/B/O NT_004852AL596225439522803chr1NT_004852AL1220044409903132000002000
S/G/Y/R/B/O NT_004852AL596225439522803  AC0111684395228013336228822084357061
S/G/Y/R/B/O NT_004852AL596225439522803  AC01632843952280116954024533141487
S/G/Y/R/B/O NT_004852AL596225439522803  AC0192684395228088729027562116291
S/G/Y/R/B/O NT_004852AL596225439522803  AL3558834409903111100500111005
S/G/Y/R/B/O NT_004852AL122004440990313chr1NT_004852AL5921664420406830000
S/G/Y/R/B/O NT_004852AL122004440990313  AC01632843836642227860022786
S/G/Y/R/B/O NT_004852AL122004440990313  AC01926843836642529010052901
S/G/Y/R/B/O NT_004852AL592166442040683chr1NT_004852AL1363804429255530200002000
S/G/Y/R/B/O NT_004852AL136380442925553chr1NT_004852AL3594734446221130017821782
S/G/Y/R/B/O NT_004852AL136380442925553  AL355991442925553395595075042093882
S/G/Y/R/B/O NT_004852AL136380442925553  AL6119284420406831205246977304110978
S/G/Y/R/B/O NT_004852AL359473444622113chr1NT_004852AL5922944453754930000
S/G/Y/R/B/O NT_004852AL359473444622113  AC0268574420406815531110671640943007
S/G/Y/R/B/O NT_004852AL592294445375493chr1NT_004852AL6457584471525930200002000
S/G/Y/R/B/O NT_004852AL592294445375493  AC01553444292555237250023725
S/G/Y/R/B/O NT_004852AL592294445375493  AC026857442925554637014981597263840
S/G/Y/R/B/O NT_004852AL592294445375493  AL39091544292555313500452235872
S/G/Y/R/B/O NT_004852AL592294445375493  AL3915964429255511097100110971
S/G/Y/R/B/O NT_004852AL592294445375493  AL3916644429255551752383556998112585
S/G/Y/R/B/O NT_004852AL645758447152593chr1NT_004852AL3595404475392130000
S/G/Y/R/B/O NT_004852AL645758447152593  AL391596447152591184502561937464
S/G/Y/R/B/O NT_004852AL645758447152593  AL391664447152591145446902083336977
S/G/Y/R/B/O NT_004852AL359540447539213chr1NT_004852AL4511364485170830198201982
S/G/Y/R/B/O NT_004852AL451136448517083chr1NT_004852AL3554804498685630000
S/G/Y/R/B/O NT_004852AL451136448517083  AC02549244851708744541100117477102932
S/G/Y/R/B/O NT_004852AL451136448517083  AL35667344851708380665285043351
S/G/Y/R/B/O NT_004852AL355480449868563chr1NT_004852AL6040284509292730017441744
S/G/Y/R/B/O NT_004852AL355480449868563  AC02549244753921210416692328531018
S/G/Y/R/B/O NT_004852AL355480449868563  AL356673447539211041139341820532550
S/G/Y/R/B/O NT_004852AL604028450929273chr1NT_004852AL6038824512755530199901999
S/G/Y/R/B/O NT_004852AL603882451275553chr1NT_004852AL7722514525233432000002000
S/G/Y/R/B/O NT_004852AL772251452523343chr1NT_004852AL6038884525432830200002000
S/G/Y/R/B/O NT_004852AL603888452543283chr1NT_004852AL6454804541089030020002000
S/G/Y/R/B/O NT_004852AL645480454108903chr1NT_004852AL3580754543795730000
S/G/Y/R/B/O NT_004852AL358075454379573chr1NT_004852AL6720434556887030199601996
S/G/Y/R/B/O NT_004852AL672043455688703chr1NT_004852AL1216024565410430000
S/G/Y/R/B/O NT_004852AL672043455688703  AL36008645437957325358114040649
S/G/Y/R/B/O NT_004852AL121602456541043chr1NT_004852AL1220014572198632000002000
S/G/Y/R/B/O NT_004852AL121602456541043  AL15789445721986426230384446467
S/G/Y/R/B/O NT_004852AL121602456541043  AL36008645721986273604412848840260
S/G/Y/R/B/O NT_004852AL122001457219863chr1NT_004852AL13779745846599300100100
S/G/Y/R/B/O NT_004852AL122001457219863  AL137799458465996204502100183046
S/G/Y/R/B/O NT_004852AL122001457219863  AL15789445846599440030836252365
S/G/Y/R/B/O NT_004852AL137797458465993chr1NT_004852AL1363734595184432000002000
S/G/Y/R/B/O NT_004852AL137797458465993  AL13779945951844374940037494
S/G/Y/R/B/O NT_004852AL137797458465993  AL15789445951844141950657320768
S/G/Y/R/B/O NT_004852AL136373459518443chr1NT_004852AL5938564607095630000
S/G/Y/R/B/O NT_004852AL136373459518443  AL35739245846599714072981074388
S/G/Y/R/B/O NT_004852AL593856460709563chr1NT_004852AL3567934622632730199501995
S/G/Y/R/B/O NT_004852AL593856460709563  AC0135934584659915276700152767
S/G/Y/R/B/O NT_004852AL593856460709563  AL35739246226327244000781332213
S/G/Y/R/B/O NT_004852AL356793462263273chr1NT_004852AL7318924630739930199701997
S/G/Y/R/B/O NT_004852AL731892463073993