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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_004686 | AL355818 | 88935945 | 3 | chr1 | NT_004686 | AL691464 | 88994069 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AL691464 | 88994069 | 3 | chr1 | NT_004686 | AL596214 | 89077778 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AL596214 | 89077778 | 3 | chr1 | NT_004686 | AC099569 | 89150403 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AL596214 | 89077778 | 3 |   |   | AC021385 | 88730687 | | 25300 | 0 | 0 | 25300 |
S/G/Y/R/B/O |
NT_004686 | AC099569 | 89150403 | 3 | chr1 | NT_004686 | AC093423 | 89275183 | 3 | 37539 | 0 | 0 | 37539 |
S/G/Y/R/B/O |
NT_004686 | AC099569 | 89150403 | 3 |   |   | AC021385 | 88730687 | | 76328 | 1848 | 0 | 78176 |
S/G/Y/R/B/O |
NT_004686 | AC093423 | 89275183 | 3 | chr1 | NT_004686 | AC099568 | 89422745 | 3 | 73024 | 0 | 0 | 73024 |
S/G/Y/R/B/O |
NT_004686 | AC099568 | 89422745 | 3 | chr1 | NT_004686 | AL391497 | 89466089 | 3 | 2574 | 0 | 0 | 2574 |
S/G/Y/R/B/O |
NT_004686 | AL391497 | 89466089 | 3 | chr1 | NT_004686 | AL161797 | 89653269 | 3 | 0 | 0 | 1730 | 1730 |
S/G/Y/R/B/O |
NT_004686 | AL391497 | 89466089 | 3 |   |   | AC079091 | 89466089 | | 69777 | 4452 | 1091 | 75320 |
S/G/Y/R/B/O |
NT_004686 | AL391497 | 89466089 | 3 |   |   | AL512367 | 89653269 | | 75333 | 3145 | 45498 | 123976 |
S/G/Y/R/B/O |
NT_004686 | AL161797 | 89653269 | 3 | chr1 | NT_004686 | AC135468 | 89751840 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AC135468 | 89751840 | 1 | chr1 | NT_004686 | AC098656 | 89845503 | 3 | 15383 | 0 | 0 | 15383 |
S/G/Y/R/B/O |
NT_004686 | AC098656 | 89845503 | 3 | chr1 | NT_004686 | AL627316 | 90017713 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AL627316 | 90017713 | 1 | chr1 | NT_004686 | AC092783 | 90071976 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AC092783 | 90071976 | 3 | chr1 | NT_004686 | AC092019 | 90183739 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AC092783 | 90071976 | 3 |   |   | AL356487 | 89751840 | | 41796 | 0 | 8048 | 49844 |
S/G/Y/R/B/O |
NT_004686 | AC092019 | 90183739 | 3 | chr1 | NT_004686 | AC124917 | 90224406 | 3 | 35406 | 0 | 0 | 35406 |
S/G/Y/R/B/O |
NT_004686 | AC092019 | 90183739 | 3 |   |   | AL356487 | 90224406 | | 69344 | 0 | 8054 | 77398 |
S/G/Y/R/B/O |
NT_004686 | AC092019 | 90183739 | 3 |   |   | AP001778 | 90224406 | | 36106 | 0 | 7736 | 43842 |
S/G/Y/R/B/O |
NT_004686 | AC124917 | 90224406 | 3 | chr1 | NT_004686 | AC092805 | 90308231 | 3 | 66105 | 0 | 0 | 66105 |
S/G/Y/R/B/O |
NT_004686 | AC124917 | 90224406 | 3 |   |   | AC016319 | 90224406 | | 11684 | 1076 | 0 | 12760 |
S/G/Y/R/B/O |
NT_004686 | AC124917 | 90224406 | 3 |   |   | AL355867 | 90308231 | | 18245 | 0 | 11847 | 30092 |
S/G/Y/R/B/O |
NT_004686 | AC124917 | 90224406 | 3 |   |   | AL356487 | 90308231 | | 30204 | 0 | 0 | 30204 |
S/G/Y/R/B/O |
NT_004686 | AC124917 | 90224406 | 3 |   |   | AP001778 | 90308231 | | 46427 | 0 | 998 | 47425 |
S/G/Y/R/B/O |
NT_004686 | AC092805 | 90308231 | 3 | chr1 | NT_004686 | AL590094 | 90441444 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_004686 | AC092805 | 90308231 | 3 |   |   | AC016319 | 90308231 | | 97248 | 0 | 0 | 97248 |
S/G/Y/R/B/O |
NT_004686 | AC092805 | 90308231 | 3 |   |   | AC084151 | 90308231 | | 60880 | 18833 | 15618 | 95331 |
S/G/Y/R/B/O |
NT_004686 | AC092805 | 90308231 | 3 |   |   | AL355867 | 90224406 | | 77613 | 10766 | 8015 | 96394 |
S/G/Y/R/B/O |
NT_004686 | AC092805 | 90308231 | 3 |   |   | AP001778 | 90441444 | | 10074 | 0 | 0 | 10074 |
S/G/Y/R/B/O |
NT_004686 | AL590094 | 90441444 | 3 | chr1 | NT_004686 | AC091614 | 90472392 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004686 | AL590094 | 90441444 | 3 |   |   | AC016319 | 90441444 | | 17841 | 0 | 0 | 17841 |
S/G/Y/R/B/O |
NT_004686 | AL590094 | 90441444 | 3 |   |   | AC022219 | 90441444 | | 14698 | 0 | 0 | 14698 |
S/G/Y/R/B/O |
NT_004686 | AL590094 | 90441444 | 3 |   |   | AL355867 | 90308231 | | 14682 | 0 | 6358 | 21040 |
S/G/Y/R/B/O |
NT_004686 | AC091614 | 90472392 | 3 | chr1 | NT_004686 | AL136109 | 90578156 | 3 | 23736 | 0 | 0 | 23736 |
S/G/Y/R/B/O |
NT_004686 | AC091614 | 90472392 | 3 |   |   | AC023147 | 90308231 | | 22817 | 0 | 0 | 22817 |
S/G/Y/R/B/O |
NT_004686 | AL136109 | 90578156 | 3 | chr1 | NT_004686 | AC119679 | 90680757 | 1 | 0 | 0 | 17713 | 17713 |
S/G/Y/R/B/O |
NT_004686 | AL136109 | 90578156 | 3 |   |   | AC022219 | 90441444 | | 100877 | 0 | 0 | 100877 |
S/G/Y/R/B/O |
NT_004686 | AL136109 | 90578156 | 3 |   |   | AC023147 | 90441444 | | 67802 | 0 | 36852 | 104654 |
S/G/Y/R/B/O |
NT_004686 | AL136109 | 90578156 | 3 |   |   | AC027738 | 90441444 | | 26113 | 0 | 7050 | 33163 |
S/G/Y/R/B/O |
NT_004686 | AC119679 | 90680757 | 1 | chr1 | NT_004686 | AL049743 | 90691168 | 3 | 69668 | 0 | 0 | 69668 |
S/G/Y/R/B/O |
NT_004686 | AC119679 | 90680757 | 1 |   |   | AC019187 | 90680757 | | 62080 | 737 | 0 | 62817 |
S/G/Y/R/B/O |
NT_004686 | AC119679 | 90680757 | 1 |   |   | AC023147 | 90680757 | | 24862 | 2047 | 33574 | 60483 |
S/G/Y/R/B/O |
NT_004686 | AC119679 | 90680757 | 1 |   |   | AC027738 | 90680757 | | 57372 | 8760 | 3902 | 70034 |
S/G/Y/R/B/O |
NT_004686 | AL049743 | 90691168 | 3 | chr1 | NT_004686 | AC093563 | 90727501 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AL049743 | 90691168 | 3 |   |   | AC019187 | 90578156 | | 78166 | 0 | 0 | 78166 |
S/G/Y/R/B/O |
NT_004686 | AL049743 | 90691168 | 3 |   |   | AC023147 | 90578156 | | 12583 | 2047 | 9891 | 24521 |
S/G/Y/R/B/O |
NT_004686 | AL049743 | 90691168 | 3 |   |   | AC027738 | 90578156 | | 45132 | 6321 | 15157 | 66610 |
S/G/Y/R/B/O |
NT_004686 | AC093563 | 90727501 | 3 | chr1 | NT_004686 | AC098690 | 90891101 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AC093563 | 90727501 | 3 |   |   | AC027738 | 90680757 | | 37085 | 6968 | 19057 | 63110 |
S/G/Y/R/B/O |
NT_004686 | AC093563 | 90727501 | 3 |   |   | AC073301 | 90680757 | | 11441 | 0 | 9703 | 21144 |
S/G/Y/R/B/O |
NT_004686 | AC093563 | 90727501 | 3 |   |   | AL356236 | 90680757 | | 18721 | 0 | 0 | 18721 |
S/G/Y/R/B/O |
NT_004686 | AC098690 | 90891101 | 3 | chr1 | NT_004686 | AC013557 | 90926484 | 1 | 21903 | 0 | 0 | 21903 |
S/G/Y/R/B/O |
NT_004686 | AC098690 | 90891101 | 3 |   |   | AC027738 | 90926484 | | 30872 | 1822 | 5307 | 38001 |
S/G/Y/R/B/O |
NT_004686 | AC098690 | 90891101 | 3 |   |   | AC073301 | 90926484 | | 33393 | 0 | 20550 | 53943 |
S/G/Y/R/B/O |
NT_004686 | AC013557 | 90926484 | 1 | chr1 | NT_004686 | AC098691 | 90998995 | 1 | 83969 | 0 | 0 | 83969 |
S/G/Y/R/B/O |
NT_004686 | AC013557 | 90926484 | 1 | chr1 | NT_004686 | AL355871 | 91052673 | 3 | 29713 | 0 | 0 | 29713 |
S/G/Y/R/B/O |
NT_004686 | AC013557 | 90926484 | 1 |   |   | AC019177 | 90926484 | | 110961 | 1778 | 9609 | 122348 |
S/G/Y/R/B/O |
NT_004686 | AC013557 | 90926484 | 1 |   |   | AC073301 | 90926484 | | 59883 | 0 | 6537 | 66420 |
S/G/Y/R/B/O |
NT_004686 | AC013557 | 90926484 | 1 |   |   | AL356236 | 91052673 | | 12256 | 2168 | 14946 | 29370 |
S/G/Y/R/B/O |
NT_004686 | AC098691 | 90998995 | 1 | chr1 | NT_004686 | AL355871 | 91052673 | 3 | 90141 | 0 | 0 | 90141 |
S/G/Y/R/B/O |
NT_004686 | AC098691 | 90998995 | 1 |   |   | AC019177 | 90926484 | | 102244 | 986 | 5812 | 109042 |
S/G/Y/R/B/O |
NT_004686 | AC098691 | 90998995 | 1 |   |   | AC027623 | 90926484 | | 35646 | 2856 | 27530 | 66032 |
S/G/Y/R/B/O |
NT_004686 | AC098691 | 90998995 | 1 |   |   | AC034169 | 90926484 | | 22434 | 4725 | 2070 | 29229 |
S/G/Y/R/B/O |
NT_004686 | AC098691 | 90998995 | 1 |   |   | AL512381 | 91052673 | | 16086 | 0 | 0 | 16086 |
S/G/Y/R/B/O |
NT_004686 | AL355871 | 91052673 | 3 | chr1 | NT_004686 | AL714022 | 91205262 | 3 | 0 | 1899 | 0 | 1899 |
S/G/Y/R/B/O |
NT_004686 | AL355871 | 91052673 | 3 | chr1 | NT_004686 | AC013557 | 90926484 | 1 | 29713 | 0 | 0 | 29713 |
S/G/Y/R/B/O |
NT_004686 | AL355871 | 91052673 | 3 |   |   | AC019177 | 90926484 | | 53411 | 1825 | 1218 | 56454 |
S/G/Y/R/B/O |
NT_004686 | AL355871 | 91052673 | 3 |   |   | AC027623 | 90926484 | | 47152 | 2856 | 55822 | 105830 |
S/G/Y/R/B/O |
NT_004686 | AL355871 | 91052673 | 3 |   |   | AC034169 | 90926484 | | 56265 | 6355 | 3287 | 65907 |
S/G/Y/R/B/O |
NT_004686 | AL355871 | 91052673 | 3 |   |   | AL512381 | 90998995 | | 27792 | 0 | 0 | 27792 |
S/G/Y/R/B/O |
NT_004686 | AL714022 | 91205262 | 3 | chr1 | NT_004686 | AC099334 | 91268321 | 3 | 0 | 0 | 1709 | 1709 |
S/G/Y/R/B/O |
NT_004686 | AL714022 | 91205262 | 3 |   |   | AC021075 | 91205262 | | 46556 | 0 | 0 | 46556 |
S/G/Y/R/B/O |
NT_004686 | AL714022 | 91205262 | 3 |   |   | AC027623 | 91205262 | | 30978 | 3374 | 15189 | 49541 |
S/G/Y/R/B/O |
NT_004686 | AL714022 | 91205262 | 3 |   |   | AC034169 | 91205262 | | 29759 | 0 | 18659 | 48418 |
S/G/Y/R/B/O |
NT_004686 | AL714022 | 91205262 | 3 |   |   | AL512381 | 91052673 | | 63056 | 0 | 0 | 63056 |
S/G/Y/R/B/O |
NT_004686 | AC099334 | 91268321 | 3 | chr1 | NT_004686 | AL445992 | 91378887 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_004686 | AC099334 | 91268321 | 3 | chr1 | NT_004464 | AC105274 | 73894905 | 1 | 28963 | 7156 | 7160 | 43279 |
S/G/Y/R/B/O |
NT_004686 | AC099334 | 91268321 | 3 |   |   | AC024195 | 91052673 | | 15362 | 0 | 0 | 15362 |
S/G/Y/R/B/O |
NT_004686 | AL445992 | 91378887 | 3 | chr1 | NT_004686 | AL162263 | 91411216 | 3 | 0 | 1923 | 0 | 1923 |
S/G/Y/R/B/O |
NT_004686 | AL445992 | 91378887 | 3 |   |   | AC024195 | 91205262 | | 28959 | 0 | 4823 | 33782 |
S/G/Y/R/B/O |
NT_004686 | AL162263 | 91411216 | 3 | chr1 | NT_004686 | AL390780 | 91481171 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004686 | AL162263 | 91411216 | 3 |   |   | AC024195 | 91411216 | | 70343 | 0 | 0 | 70343 |
S/G/Y/R/B/O |
NT_004686 | AL162263 | 91411216 | 3 |   |   | AL590555 | 91378887 | | 48095 | 0 | 0 | 48095 |
S/G/Y/R/B/O |
NT_004686 | AL390780 | 91481171 | 3 | chr1 | NT_004686 | AC114486 | 91540266 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004686 | AL390780 | 91481171 | 3 |   |   | AC024195 | 91378887 | | 24166 | 0 | 0 | 24166 |
S/G/Y/R/B/O |
NT_004686 | AC114486 | 91540266 | 3 | chr1 | NT_004686 | AC104836 | 91717336 | 3 | 2549 | 0 | 0 | 2549 |
S/G/Y/R/B/O |
NT_004686 | AC104836 | 91717336 | 3 | chr1 | NT_004686 | AL663109 | 91857513 | 3 | 0 | 0 | 2537 | 2537 |
S/G/Y/R/B/O |
NT_004686 | AC104836 | 91717336 | 3 |   |   | AC023066 | 91481171 | | 103037 | 0 | 3794 | 106831 |
S/G/Y/R/B/O |
NT_004686 | AL663109 | 91857513 | 3 | chr1 | NT_004686 | AL451010 | 91872243 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004686 | AL451010 | 91872243 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_004686 | AL451010 | 91872243 | 3 | chr1 | NT_034385 | AC095037 | 82630354 | 1 | 76386 | 2420 | 1162 | 79968 |
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