Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004686

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004686	AL355818	88935945	3	chr1	NT_004686	AL691464	88994069	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL691464	88994069	3	chr1	NT_004686	AL596214	89077778	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL596214	89077778	3	chr1	NT_004686	AC099569	89150403	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL596214	89077778	3			AC021385	88730687		25300	0	0	25300
S/G/Y/R/B/O	NT_004686	AC099569	89150403	3	chr1	NT_004686	AC093423	89275183	3	37539	0	0	37539
S/G/Y/R/B/O	NT_004686	AC099569	89150403	3			AC021385	88730687		76328	1848	0	78176
S/G/Y/R/B/O	NT_004686	AC093423	89275183	3	chr1	NT_004686	AC099568	89422745	3	73024	0	0	73024
S/G/Y/R/B/O	NT_004686	AC099568	89422745	3	chr1	NT_004686	AL391497	89466089	3	2574	0	0	2574
S/G/Y/R/B/O	NT_004686	AL391497	89466089	3	chr1	NT_004686	AL161797	89653269	3	0	0	1730	1730
S/G/Y/R/B/O	NT_004686	AL391497	89466089	3			AC079091	89466089		69777	4452	1091	75320
S/G/Y/R/B/O	NT_004686	AL391497	89466089	3			AL512367	89653269		75333	3145	45498	123976
S/G/Y/R/B/O	NT_004686	AL161797	89653269	3	chr1	NT_004686	AC135468	89751840	1	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC135468	89751840	1	chr1	NT_004686	AC098656	89845503	3	15383	0	0	15383
S/G/Y/R/B/O	NT_004686	AC098656	89845503	3	chr1	NT_004686	AL627316	90017713	1	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL627316	90017713	1	chr1	NT_004686	AC092783	90071976	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC092783	90071976	3	chr1	NT_004686	AC092019	90183739	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC092783	90071976	3			AL356487	89751840		41796	0	8048	49844
S/G/Y/R/B/O	NT_004686	AC092019	90183739	3	chr1	NT_004686	AC124917	90224406	3	35406	0	0	35406
S/G/Y/R/B/O	NT_004686	AC092019	90183739	3			AL356487	90224406		69344	0	8054	77398
S/G/Y/R/B/O	NT_004686	AC092019	90183739	3			AP001778	90224406		36106	0	7736	43842
S/G/Y/R/B/O	NT_004686	AC124917	90224406	3	chr1	NT_004686	AC092805	90308231	3	66105	0	0	66105
S/G/Y/R/B/O	NT_004686	AC124917	90224406	3			AC016319	90224406		11684	1076	0	12760
S/G/Y/R/B/O	NT_004686	AC124917	90224406	3			AL355867	90308231		18245	0	11847	30092
S/G/Y/R/B/O	NT_004686	AC124917	90224406	3			AL356487	90308231		30204	0	0	30204
S/G/Y/R/B/O	NT_004686	AC124917	90224406	3			AP001778	90308231		46427	0	998	47425
S/G/Y/R/B/O	NT_004686	AC092805	90308231	3	chr1	NT_004686	AL590094	90441444	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004686	AC092805	90308231	3			AC016319	90308231		97248	0	0	97248
S/G/Y/R/B/O	NT_004686	AC092805	90308231	3			AC084151	90308231		60880	18833	15618	95331
S/G/Y/R/B/O	NT_004686	AC092805	90308231	3			AL355867	90224406		77613	10766	8015	96394
S/G/Y/R/B/O	NT_004686	AC092805	90308231	3			AP001778	90441444		10074	0	0	10074
S/G/Y/R/B/O	NT_004686	AL590094	90441444	3	chr1	NT_004686	AC091614	90472392	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004686	AL590094	90441444	3			AC016319	90441444		17841	0	0	17841
S/G/Y/R/B/O	NT_004686	AL590094	90441444	3			AC022219	90441444		14698	0	0	14698
S/G/Y/R/B/O	NT_004686	AL590094	90441444	3			AL355867	90308231		14682	0	6358	21040
S/G/Y/R/B/O	NT_004686	AC091614	90472392	3	chr1	NT_004686	AL136109	90578156	3	23736	0	0	23736
S/G/Y/R/B/O	NT_004686	AC091614	90472392	3			AC023147	90308231		22817	0	0	22817
S/G/Y/R/B/O	NT_004686	AL136109	90578156	3	chr1	NT_004686	AC119679	90680757	1	0	0	17713	17713
S/G/Y/R/B/O	NT_004686	AL136109	90578156	3			AC022219	90441444		100877	0	0	100877
S/G/Y/R/B/O	NT_004686	AL136109	90578156	3			AC023147	90441444		67802	0	36852	104654
S/G/Y/R/B/O	NT_004686	AL136109	90578156	3			AC027738	90441444		26113	0	7050	33163
S/G/Y/R/B/O	NT_004686	AC119679	90680757	1	chr1	NT_004686	AL049743	90691168	3	69668	0	0	69668
S/G/Y/R/B/O	NT_004686	AC119679	90680757	1			AC019187	90680757		62080	737	0	62817
S/G/Y/R/B/O	NT_004686	AC119679	90680757	1			AC023147	90680757		24862	2047	33574	60483
S/G/Y/R/B/O	NT_004686	AC119679	90680757	1			AC027738	90680757		57372	8760	3902	70034
S/G/Y/R/B/O	NT_004686	AL049743	90691168	3	chr1	NT_004686	AC093563	90727501	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL049743	90691168	3			AC019187	90578156		78166	0	0	78166
S/G/Y/R/B/O	NT_004686	AL049743	90691168	3			AC023147	90578156		12583	2047	9891	24521
S/G/Y/R/B/O	NT_004686	AL049743	90691168	3			AC027738	90578156		45132	6321	15157	66610
S/G/Y/R/B/O	NT_004686	AC093563	90727501	3	chr1	NT_004686	AC098690	90891101	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC093563	90727501	3			AC027738	90680757		37085	6968	19057	63110
S/G/Y/R/B/O	NT_004686	AC093563	90727501	3			AC073301	90680757		11441	0	9703	21144
S/G/Y/R/B/O	NT_004686	AC093563	90727501	3			AL356236	90680757		18721	0	0	18721
S/G/Y/R/B/O	NT_004686	AC098690	90891101	3	chr1	NT_004686	AC013557	90926484	1	21903	0	0	21903
S/G/Y/R/B/O	NT_004686	AC098690	90891101	3			AC027738	90926484		30872	1822	5307	38001
S/G/Y/R/B/O	NT_004686	AC098690	90891101	3			AC073301	90926484		33393	0	20550	53943
S/G/Y/R/B/O	NT_004686	AC013557	90926484	1	chr1	NT_004686	AC098691	90998995	1	83969	0	0	83969
S/G/Y/R/B/O	NT_004686	AC013557	90926484	1	chr1	NT_004686	AL355871	91052673	3	29713	0	0	29713
S/G/Y/R/B/O	NT_004686	AC013557	90926484	1			AC019177	90926484		110961	1778	9609	122348
S/G/Y/R/B/O	NT_004686	AC013557	90926484	1			AC073301	90926484		59883	0	6537	66420
S/G/Y/R/B/O	NT_004686	AC013557	90926484	1			AL356236	91052673		12256	2168	14946	29370
S/G/Y/R/B/O	NT_004686	AC098691	90998995	1	chr1	NT_004686	AL355871	91052673	3	90141	0	0	90141
S/G/Y/R/B/O	NT_004686	AC098691	90998995	1			AC019177	90926484		102244	986	5812	109042
S/G/Y/R/B/O	NT_004686	AC098691	90998995	1			AC027623	90926484		35646	2856	27530	66032
S/G/Y/R/B/O	NT_004686	AC098691	90998995	1			AC034169	90926484		22434	4725	2070	29229
S/G/Y/R/B/O	NT_004686	AC098691	90998995	1			AL512381	91052673		16086	0	0	16086
S/G/Y/R/B/O	NT_004686	AL355871	91052673	3	chr1	NT_004686	AL714022	91205262	3	0	1899	0	1899
S/G/Y/R/B/O	NT_004686	AL355871	91052673	3	chr1	NT_004686	AC013557	90926484	1	29713	0	0	29713
S/G/Y/R/B/O	NT_004686	AL355871	91052673	3			AC019177	90926484		53411	1825	1218	56454
S/G/Y/R/B/O	NT_004686	AL355871	91052673	3			AC027623	90926484		47152	2856	55822	105830
S/G/Y/R/B/O	NT_004686	AL355871	91052673	3			AC034169	90926484		56265	6355	3287	65907
S/G/Y/R/B/O	NT_004686	AL355871	91052673	3			AL512381	90998995		27792	0	0	27792
S/G/Y/R/B/O	NT_004686	AL714022	91205262	3	chr1	NT_004686	AC099334	91268321	3	0	0	1709	1709
S/G/Y/R/B/O	NT_004686	AL714022	91205262	3			AC021075	91205262		46556	0	0	46556
S/G/Y/R/B/O	NT_004686	AL714022	91205262	3			AC027623	91205262		30978	3374	15189	49541
S/G/Y/R/B/O	NT_004686	AL714022	91205262	3			AC034169	91205262		29759	0	18659	48418
S/G/Y/R/B/O	NT_004686	AL714022	91205262	3			AL512381	91052673		63056	0	0	63056
S/G/Y/R/B/O	NT_004686	AC099334	91268321	3	chr1	NT_004686	AL445992	91378887	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004686	AC099334	91268321	3	chr1	NT_004464	AC105274	73894905	1	28963	7156	7160	43279
S/G/Y/R/B/O	NT_004686	AC099334	91268321	3			AC024195	91052673		15362	0	0	15362
S/G/Y/R/B/O	NT_004686	AL445992	91378887	3	chr1	NT_004686	AL162263	91411216	3	0	1923	0	1923
S/G/Y/R/B/O	NT_004686	AL445992	91378887	3			AC024195	91205262		28959	0	4823	33782
S/G/Y/R/B/O	NT_004686	AL162263	91411216	3	chr1	NT_004686	AL390780	91481171	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004686	AL162263	91411216	3			AC024195	91411216		70343	0	0	70343
S/G/Y/R/B/O	NT_004686	AL162263	91411216	3			AL590555	91378887		48095	0	0	48095
S/G/Y/R/B/O	NT_004686	AL390780	91481171	3	chr1	NT_004686	AC114486	91540266	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004686	AL390780	91481171	3			AC024195	91378887		24166	0	0	24166
S/G/Y/R/B/O	NT_004686	AC114486	91540266	3	chr1	NT_004686	AC104836	91717336	3	2549	0	0	2549
S/G/Y/R/B/O	NT_004686	AC104836	91717336	3	chr1	NT_004686	AL663109	91857513	3	0	0	2537	2537
S/G/Y/R/B/O	NT_004686	AC104836	91717336	3			AC023066	91481171		103037	0	3794	106831
S/G/Y/R/B/O	NT_004686	AL663109	91857513	3	chr1	NT_004686	AL451010	91872243	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL451010	91872243	3
S/G/Y/R/B/O	NT_004686	AL451010	91872243	3	chr1	NT_034385	AC095037	82630354	1	76386	2420	1162	79968