Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - Clone Overlaps - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Overlap Page Whole Chromosome Single Contigs

Line color code:

  • White: overlap with immediately succeeding clone
  • Green: overlap with clone in same contig
  • Pink: overlap with clone in same chromosome, different contig
  • Red: overlap with clone on different chromosome
  • Yellow: overlap with clone not used in assembly

NT_034471 NT_037484 NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917
NT_028054 NT_032967 NT_021937 NT_004873 NT_030584 NT_029218 NT_004610 NT_004391
NT_004782 NT_037485 NT_028053 NT_004538 NT_034379 NT_037486 NT_034429 NT_004511
NT_037487 NT_004852 NT_032977 NT_029223 NT_029865 NT_004636 NT_032948 NT_004464
NT_034383 NT_004483 NT_037488 NT_004902 NT_034385 NT_026943 NT_034386 NT_029231
NT_004658 NT_004686 NT_037489 NT_021979 NT_034389 NT_037490 NT_034392 NT_028050
NT_030567 NT_021977 NT_029860 NT_037491 NT_019273 NT_004754 NT_022052 NT_022071
NT_004434 NT_037492 NT_037493 NT_037494 NT_034398 NT_034400 NT_034401 NT_034402
NT_034403 NT_037495 NT_032962 NT_037496 NT_021907 NT_037497 NT_004858 NT_037498
NT_004668 NT_037499 NT_029874 NT_004487 NT_037500 NT_021905 NT_004671 NT_029862
NT_034408 NT_034409 NT_037501 NT_034410 NT_034411 NT_021877 NT_034412 NT_004612
NT_037503 NT_021953 NT_004861 NT_004525 NT_004559 NT_031728 NT_021973 NT_004753
NT_004433 NT_030561 NT_004836 NT_004734 NT_004536 NT_032964 NT_037504 NT_037505
NT_031730 NT_029870 NT_032969 NT_032968


  NT_004511
 
LinksContig1Acc1Start1PhsChr2Contig2Acc2Start2PhsStrong OverlapMedium OverlapWeak OverlapTotal Overlap
S/G/Y/R/B/O NT_004511AL513327327236471chr1NT_004511AL138837329104513165670016567
S/G/Y/R/B/O NT_004511AL138837329104513chr1NT_004511AC115285330093243173660017366
S/G/Y/R/B/O NT_004511AC115285330093243chr1NT_004511AL355178331167443469030046903
S/G/Y/R/B/O NT_004511AC115285330093243  AC025303327236475275528401823573830
S/G/Y/R/B/O NT_004511AL355178331167443chr1NT_004511AL1616433317460530200002000
S/G/Y/R/B/O NT_004511AL355178331167443  AC01380033116744114260011426
S/G/Y/R/B/O NT_004511AL355178331167443  AC025303331167446350949331109979541
S/G/Y/R/B/O NT_004511AL161643331746053chr1NT_004511AL1391403326136732000002000
S/G/Y/R/B/O NT_004511AL161643331746053  AC01380033174605886180088618
S/G/Y/R/B/O NT_004511AL161643331746053  AC02530333174605238310125025081
S/G/Y/R/B/O NT_004511AL139140332613673chr1NT_004511AL1219803333759632000002000
S/G/Y/R/B/O NT_004511AL139140332613673  AC01380033116744537520053752
S/G/Y/R/B/O NT_004511AL121980333375963chr1NT_004511AC116993334662003307010030701
S/G/Y/R/B/O NT_004511AL121980333375963  AC01225033174605253470025347
S/G/Y/R/B/O NT_004511AL121980333375963  AL66292733261367253970025397
S/G/Y/R/B/O NT_004511AC116993334662003chr1NT_004511AL6071063353738430017871787
S/G/Y/R/B/O NT_004511AC116993334662003  AC01225033261367946420094642
S/G/Y/R/B/O NT_004511AC116993334662003  AL66292733537384963510096351
S/G/Y/R/B/O NT_004511AL607106335373843chr1NT_004511AL5962243357216130016861686
S/G/Y/R/B/O NT_004511AL596224335721613chr1NT_004511AC1152863368494530019621962
S/G/Y/R/B/O NT_004511AL596224335721613  AC01225033572161781950203580230
S/G/Y/R/B/O NT_004511AL596224335721613  AC022251335721615450215063595091958
S/G/Y/R/B/O NT_004511AL596224335721613  AL35949833684945309212323033244
S/G/Y/R/B/O NT_004511AL596224335721613  AL66292733537384803800080380
S/G/Y/R/B/O NT_004511AC115286336849453chr1NT_004511AL3600923380794230199901999
S/G/Y/R/B/O NT_004511AC115286336849453  AC02225133537384607870060787
S/G/Y/R/B/O NT_004511AC115286336849453  AL359498335373842566121651754845374
S/G/Y/R/B/O NT_004511AL360092338079423chr1NT_004511AL0086343389163130199701997
S/G/Y/R/B/O NT_004511AL008634338916313chr1NT_004511AL3651883404222332000002000
S/G/Y/R/B/O NT_004511AL365188340422233chr1NT_004511AC0995653410471430015091509
S/G/Y/R/B/O NT_004511AC099565341047143chr1NT_004511AL3562563421079230017211721
S/G/Y/R/B/O NT_004511AL356256342107923chr1NT_004511AL1219883422944530199701997
S/G/Y/R/B/O NT_004511AL121988342294453chr1NT_004511AL12201034354322300100100
S/G/Y/R/B/O NT_004511AL122010343543223chr1NT_004511AC1144903439982838046008046
S/G/Y/R/B/O NT_004511AC114490343998283chr1NT_004511AL6070893454420533811003811
S/G/Y/R/B/O NT_004511AL607089345442053chr1NT_004511AL5904343463801530199601996
S/G/Y/R/B/O NT_004511AL607089345442053  AC026026345442051084025171268126038
S/G/Y/R/B/O NT_004511AL590434346380153chr1NT_004511AL1600003481992830000
S/G/Y/R/B/O NT_004511AL590434346380153  AC026026346380153159896082259563801
S/G/Y/R/B/O NT_004511AL590434346380153  AC061970346380153466071761632858164
S/G/Y/R/B/O NT_004511AL160000348199283chr1NT_004511AL3563623486497430200002000
S/G/Y/R/B/O NT_004511AL160000348199283  AC061970345442051504312609425231904
S/G/Y/R/B/O NT_004511AL356362348649743chr1NT_004511AL4452113497993430200002000
S/G/Y/R/B/O NT_004511AL356362348649743  AL35773334819928441090668450793
S/G/Y/R/B/O NT_004511AL445211349799343chr1NT_004511AC0048653498283030190801908
S/G/Y/R/B/O NT_004511AC004865349828303chr1NT_004511AL1579513510091830000
S/G/Y/R/B/O NT_004511AC004865349828303  AL44526034979934344362441344240319
S/G/Y/R/B/O NT_004511AL157951351009183chr1NT_004511AL3570353513070730000
S/G/Y/R/B/O NT_004511AL357035351307073chr1NT_004511AL3548643514352132000002000
S/G/Y/R/B/O NT_004511AL354864351435213chr1NT_004511AL3591863533581730200002000
S/G/Y/R/B/O NT_004511AL354864351435213  AL139143351435213913027921996761889
S/G/Y/R/B/O NT_004511AL359186353358173chr1NT_004511AL1392863538343030200002000
S/G/Y/R/B/O NT_004511AL359186353358173  AL13914335335817259010942235323
S/G/Y/R/B/O NT_004511AL139286353834303chr1NT_004511AL13878735519606300105105
S/G/Y/R/B/O NT_004511AL139286353834303  AC01214135143521253420980735149
S/G/Y/R/B/O NT_004511AL139286353834303  AL13884335519606237780023778
S/G/Y/R/B/O NT_004511AL138787355196063chr1NT_004511AC114484356476343162340016234
S/G/Y/R/B/O NT_004511AL138787355196063  AC012141353358174979269183818294892
S/G/Y/R/B/O NT_004511AL138787355196063  AL138843356476345294801589768845
S/G/Y/R/B/O NT_004511AC114484356476343chr1NT_004511AL360074357501631007315473154
S/G/Y/R/B/O NT_004511AC114484356476343  AC01214135383430223470022347
S/G/Y/R/B/O NT_004511AL360074357501631chr1NT_004511AL5918453578431630000
S/G/Y/R/B/O NT_004511AL591845357843163chr1NT_004511AC1196753588862332000002000
S/G/Y/R/B/O NT_004511AC119675358886233chr1NT_004511AL4452453602556230000
S/G/Y/R/B/O NT_004511AL445245360255623chr1NT_004511AL0802863607467430000
S/G/Y/R/B/O NT_004511AL080286360746743chr1NT_004511AL5962573622795230199501995
S/G/Y/R/B/O NT_004511AL596257362279523chr1NT_004511AC1179453628612130016291629
S/G/Y/R/B/O NT_004511AL596257362279523  AL35641236074674207840329624080
S/G/Y/R/B/O NT_004511AC117945362861213chr1NT_004511AL5918833644467830199901999
S/G/Y/R/B/O NT_004511AC117945362861213  AC02654236074674856650085665
S/G/Y/R/B/O NT_004511AC117945362861213  AL356412360746743214603012362269
S/G/Y/R/B/O NT_004511AL591883364446783chr1NT_004511AL3553863645046530199701997
S/G/Y/R/B/O NT_004511AL355386364504653chr1NT_004511AL03143036581705300100100
S/G/Y/R/B/O NT_004511AL355386364504653  AC0265423645046586947256811981101496
S/G/Y/R/B/O NT_004511AL355386364504653  AL3596353658170555324144601124881032
S/G/Y/R/B/O NT_004511AL355386364504653  AL359966365817059419753083138102643
S/G/Y/R/B/O NT_004511AL355386364504653  AL360016365817051140517098028503
S/G/Y/R/B/O NT_004511AL031430365817053chr1NT_004511AL5901273674088630000
S/G/Y/R/B/O NT_004511AL031430365817053  AC02719136444678788771617520039115091
S/G/Y/R/B/O NT_004511AL031430365817053  AL359635364504652290716806546145174
S/G/Y/R/B/O NT_004511AL031430365817053  AL359966364504654009801611156209
S/G/Y/R/B/O NT_004511AL590127367408863chr1NT_004511AL3536043678035030199901999
S/G/Y/R/B/O NT_004511AL353604367803503chr1NT_004511AL03352436841747300100100
S/G/Y/R/B/O NT_004511AL033524368417473chr1NT_004511AL4492843694337530199101991
S/G/Y/R/B/O NT_004511AL449284369433753chr1NT_004511AL0343793699910432000002000
S/G/Y/R/B/O NT_004511AL449284369433753  AL35588036999104345960034596
S/G/Y/R/B/O NT_004511AL034379369991043chr1NT_004511AL5132203710932832000002000
S/G/Y/R/B/O NT_004511AL034379369991043  AL3558803699910411211000112110
S/G/Y/R/B/O NT_004511AL513220371093283chr1NT_004511AC1043363720196630017441744
S/G/Y/R/B/O NT_004511AL513220371093283  AC02322537109328156800015680
S/G/Y/R/B/O NT_004511AC104336372019663chr1NT_004511AL9294723733413210000
S/G/Y/R/B/O NT_004511AC104336372019663chr1NT_004511AC022557373388901151290117616305
S/G/Y/R/B/O NT_004511AC104336372019663  AC0232253733889073926229334063110282
S/G/Y/R/B/O NT_004511AL929472373341321chr1NT_004511AC022557373388901196650117720842
S/G/Y/R/B/O NT_004511AL929472373341321  AC023225373388906239623112870593412
S/G/Y/R/B/O NT_004511AL929472373341321  AC023225373388906239623112870593412
S/G/Y/R/B/O NT_004511AL929472373341321  AL5134731297438255592701919775124
S/G/Y/R/B/O NT_004511AL929472373341321  AL5134731297438255592701919775124
S/G/Y/R/B/O NT_004511AL929472373341321  AL603790129743825196650019665
S/G/Y/R/B/O NT_004511AL929472373341321  AL603790129743825196650019665
S/G/Y/R/B/O NT_004511AL929472373341321  AL603790129743825196650019665
S/G/Y/R/B/O NT_004511AL929472373341321  AL603790129743825196650019665
S/G/Y/R/B/O NT_004511AC022557373388901         
S/G/Y/R/B/O NT_004511AC022557373388901chr1NT_004511AC104336372019663151290117616305
S/G/Y/R/B/O NT_004511AC022557373388901  AC023225129743825453970102946426
S/G/Y/R/B/O NT_004511AC022557373388901  AL513473372019668232501647598800
S/G/Y/R/B/O NT_004511AC022557373388901  AL60379037201966629335407665574995
S/G/Y/R/B/O NT_004511AC022557373388901  AL60379037201966629335407665574995