Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004511

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004511	AL513327	32723647	1	chr1	NT_004511	AL138837	32910451	3	16567	0	0	16567
S/G/Y/R/B/O	NT_004511	AL138837	32910451	3	chr1	NT_004511	AC115285	33009324	3	17366	0	0	17366
S/G/Y/R/B/O	NT_004511	AC115285	33009324	3	chr1	NT_004511	AL355178	33116744	3	46903	0	0	46903
S/G/Y/R/B/O	NT_004511	AC115285	33009324	3			AC025303	32723647		52755	2840	18235	73830
S/G/Y/R/B/O	NT_004511	AL355178	33116744	3	chr1	NT_004511	AL161643	33174605	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004511	AL355178	33116744	3			AC013800	33116744		11426	0	0	11426
S/G/Y/R/B/O	NT_004511	AL355178	33116744	3			AC025303	33116744		63509	4933	11099	79541
S/G/Y/R/B/O	NT_004511	AL161643	33174605	3	chr1	NT_004511	AL139140	33261367	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AL161643	33174605	3			AC013800	33174605		88618	0	0	88618
S/G/Y/R/B/O	NT_004511	AL161643	33174605	3			AC025303	33174605		23831	0	1250	25081
S/G/Y/R/B/O	NT_004511	AL139140	33261367	3	chr1	NT_004511	AL121980	33337596	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AL139140	33261367	3			AC013800	33116744		53752	0	0	53752
S/G/Y/R/B/O	NT_004511	AL121980	33337596	3	chr1	NT_004511	AC116993	33466200	3	30701	0	0	30701
S/G/Y/R/B/O	NT_004511	AL121980	33337596	3			AC012250	33174605		25347	0	0	25347
S/G/Y/R/B/O	NT_004511	AL121980	33337596	3			AL662927	33261367		25397	0	0	25397
S/G/Y/R/B/O	NT_004511	AC116993	33466200	3	chr1	NT_004511	AL607106	33537384	3	0	0	1787	1787
S/G/Y/R/B/O	NT_004511	AC116993	33466200	3			AC012250	33261367		94642	0	0	94642
S/G/Y/R/B/O	NT_004511	AC116993	33466200	3			AL662927	33537384		96351	0	0	96351
S/G/Y/R/B/O	NT_004511	AL607106	33537384	3	chr1	NT_004511	AL596224	33572161	3	0	0	1686	1686
S/G/Y/R/B/O	NT_004511	AL596224	33572161	3	chr1	NT_004511	AC115286	33684945	3	0	0	1962	1962
S/G/Y/R/B/O	NT_004511	AL596224	33572161	3			AC012250	33572161		78195	0	2035	80230
S/G/Y/R/B/O	NT_004511	AL596224	33572161	3			AC022251	33572161		54502	1506	35950	91958
S/G/Y/R/B/O	NT_004511	AL596224	33572161	3			AL359498	33684945		30921	2323	0	33244
S/G/Y/R/B/O	NT_004511	AL596224	33572161	3			AL662927	33537384		80380	0	0	80380
S/G/Y/R/B/O	NT_004511	AC115286	33684945	3	chr1	NT_004511	AL360092	33807942	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004511	AC115286	33684945	3			AC022251	33537384		60787	0	0	60787
S/G/Y/R/B/O	NT_004511	AC115286	33684945	3			AL359498	33537384		25661	2165	17548	45374
S/G/Y/R/B/O	NT_004511	AL360092	33807942	3	chr1	NT_004511	AL008634	33891631	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004511	AL008634	33891631	3	chr1	NT_004511	AL365188	34042223	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AL365188	34042223	3	chr1	NT_004511	AC099565	34104714	3	0	0	1509	1509
S/G/Y/R/B/O	NT_004511	AC099565	34104714	3	chr1	NT_004511	AL356256	34210792	3	0	0	1721	1721
S/G/Y/R/B/O	NT_004511	AL356256	34210792	3	chr1	NT_004511	AL121988	34229445	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004511	AL121988	34229445	3	chr1	NT_004511	AL122010	34354322	3	0	0	100	100
S/G/Y/R/B/O	NT_004511	AL122010	34354322	3	chr1	NT_004511	AC114490	34399828	3	8046	0	0	8046
S/G/Y/R/B/O	NT_004511	AC114490	34399828	3	chr1	NT_004511	AL607089	34544205	3	3811	0	0	3811
S/G/Y/R/B/O	NT_004511	AL607089	34544205	3	chr1	NT_004511	AL590434	34638015	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004511	AL607089	34544205	3			AC026026	34544205		10840	2517	12681	26038
S/G/Y/R/B/O	NT_004511	AL590434	34638015	3	chr1	NT_004511	AL160000	34819928	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AL590434	34638015	3			AC026026	34638015		31598	9608	22595	63801
S/G/Y/R/B/O	NT_004511	AL590434	34638015	3			AC061970	34638015		34660	7176	16328	58164
S/G/Y/R/B/O	NT_004511	AL160000	34819928	3	chr1	NT_004511	AL356362	34864974	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004511	AL160000	34819928	3			AC061970	34544205		15043	12609	4252	31904
S/G/Y/R/B/O	NT_004511	AL356362	34864974	3	chr1	NT_004511	AL445211	34979934	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004511	AL356362	34864974	3			AL357733	34819928		44109	0	6684	50793
S/G/Y/R/B/O	NT_004511	AL445211	34979934	3	chr1	NT_004511	AC004865	34982830	3	0	1908	0	1908
S/G/Y/R/B/O	NT_004511	AC004865	34982830	3	chr1	NT_004511	AL157951	35100918	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AC004865	34982830	3			AL445260	34979934		34436	2441	3442	40319
S/G/Y/R/B/O	NT_004511	AL157951	35100918	3	chr1	NT_004511	AL357035	35130707	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AL357035	35130707	3	chr1	NT_004511	AL354864	35143521	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AL354864	35143521	3	chr1	NT_004511	AL359186	35335817	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004511	AL354864	35143521	3			AL139143	35143521		39130	2792	19967	61889
S/G/Y/R/B/O	NT_004511	AL359186	35335817	3	chr1	NT_004511	AL139286	35383430	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004511	AL359186	35335817	3			AL139143	35335817		25901	0	9422	35323
S/G/Y/R/B/O	NT_004511	AL139286	35383430	3	chr1	NT_004511	AL138787	35519606	3	0	0	105	105
S/G/Y/R/B/O	NT_004511	AL139286	35383430	3			AC012141	35143521		25342	0	9807	35149
S/G/Y/R/B/O	NT_004511	AL139286	35383430	3			AL138843	35519606		23778	0	0	23778
S/G/Y/R/B/O	NT_004511	AL138787	35519606	3	chr1	NT_004511	AC114484	35647634	3	16234	0	0	16234
S/G/Y/R/B/O	NT_004511	AL138787	35519606	3			AC012141	35335817		49792	6918	38182	94892
S/G/Y/R/B/O	NT_004511	AL138787	35519606	3			AL138843	35647634		52948	0	15897	68845
S/G/Y/R/B/O	NT_004511	AC114484	35647634	3	chr1	NT_004511	AL360074	35750163	1	0	0	73154	73154
S/G/Y/R/B/O	NT_004511	AC114484	35647634	3			AC012141	35383430		22347	0	0	22347
S/G/Y/R/B/O	NT_004511	AL360074	35750163	1	chr1	NT_004511	AL591845	35784316	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AL591845	35784316	3	chr1	NT_004511	AC119675	35888623	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AC119675	35888623	3	chr1	NT_004511	AL445245	36025562	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AL445245	36025562	3	chr1	NT_004511	AL080286	36074674	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AL080286	36074674	3	chr1	NT_004511	AL596257	36227952	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004511	AL596257	36227952	3	chr1	NT_004511	AC117945	36286121	3	0	0	1629	1629
S/G/Y/R/B/O	NT_004511	AL596257	36227952	3			AL356412	36074674		20784	0	3296	24080
S/G/Y/R/B/O	NT_004511	AC117945	36286121	3	chr1	NT_004511	AL591883	36444678	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004511	AC117945	36286121	3			AC026542	36074674		85665	0	0	85665
S/G/Y/R/B/O	NT_004511	AC117945	36286121	3			AL356412	36074674		32146	0	30123	62269
S/G/Y/R/B/O	NT_004511	AL591883	36444678	3	chr1	NT_004511	AL355386	36450465	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004511	AL355386	36450465	3	chr1	NT_004511	AL031430	36581705	3	0	0	100	100
S/G/Y/R/B/O	NT_004511	AL355386	36450465	3			AC026542	36450465		86947	2568	11981	101496
S/G/Y/R/B/O	NT_004511	AL355386	36450465	3			AL359635	36581705		55324	14460	11248	81032
S/G/Y/R/B/O	NT_004511	AL355386	36450465	3			AL359966	36581705		94197	5308	3138	102643
S/G/Y/R/B/O	NT_004511	AL355386	36450465	3			AL360016	36581705		11405	17098	0	28503
S/G/Y/R/B/O	NT_004511	AL031430	36581705	3	chr1	NT_004511	AL590127	36740886	3	0	0	0	0
S/G/Y/R/B/O	NT_004511	AL031430	36581705	3			AC027191	36444678		78877	16175	20039	115091
S/G/Y/R/B/O	NT_004511	AL031430	36581705	3			AL359635	36450465		22907	16806	5461	45174
S/G/Y/R/B/O	NT_004511	AL031430	36581705	3			AL359966	36450465		40098	0	16111	56209
S/G/Y/R/B/O	NT_004511	AL590127	36740886	3	chr1	NT_004511	AL353604	36780350	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004511	AL353604	36780350	3	chr1	NT_004511	AL033524	36841747	3	0	0	100	100
S/G/Y/R/B/O	NT_004511	AL033524	36841747	3	chr1	NT_004511	AL449284	36943375	3	0	1991	0	1991
S/G/Y/R/B/O	NT_004511	AL449284	36943375	3	chr1	NT_004511	AL034379	36999104	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AL449284	36943375	3			AL355880	36999104		34596	0	0	34596
S/G/Y/R/B/O	NT_004511	AL034379	36999104	3	chr1	NT_004511	AL513220	37109328	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004511	AL034379	36999104	3			AL355880	36999104		112110	0	0	112110
S/G/Y/R/B/O	NT_004511	AL513220	37109328	3	chr1	NT_004511	AC104336	37201966	3	0	0	1744	1744
S/G/Y/R/B/O	NT_004511	AL513220	37109328	3			AC023225	37109328		15680	0	0	15680
S/G/Y/R/B/O	NT_004511	AC104336	37201966	3	chr1	NT_004511	AL929472	37334132	1	0	0	0	0
S/G/Y/R/B/O	NT_004511	AC104336	37201966	3	chr1	NT_004511	AC022557	37338890	1	15129	0	1176	16305
S/G/Y/R/B/O	NT_004511	AC104336	37201966	3			AC023225	37338890		73926	2293	34063	110282
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1	chr1	NT_004511	AC022557	37338890	1	19665	0	1177	20842
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AC023225	37338890		62396	2311	28705	93412
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AC023225	37338890		62396	2311	28705	93412
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AL513473	129743825		55927	0	19197	75124
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AL513473	129743825		55927	0	19197	75124
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AL603790	129743825		19665	0	0	19665
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AL603790	129743825		19665	0	0	19665
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AL603790	129743825		19665	0	0	19665
S/G/Y/R/B/O	NT_004511	AL929472	37334132	1			AL603790	129743825		19665	0	0	19665
S/G/Y/R/B/O	NT_004511	AC022557	37338890	1
S/G/Y/R/B/O	NT_004511	AC022557	37338890	1	chr1	NT_004511	AC104336	37201966	3	15129	0	1176	16305
S/G/Y/R/B/O	NT_004511	AC022557	37338890	1			AC023225	129743825		45397	0	1029	46426
S/G/Y/R/B/O	NT_004511	AC022557	37338890	1			AL513473	37201966		82325	0	16475	98800
S/G/Y/R/B/O	NT_004511	AC022557	37338890	1			AL603790	37201966		62933	5407	6655	74995
S/G/Y/R/B/O	NT_004511	AC022557	37338890	1			AL603790	37201966		62933	5407	6655	74995