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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_004511 | AL513327 | 32723647 | 1 | chr1 | NT_004511 | AL138837 | 32910451 | 3 | 16567 | 0 | 0 | 16567 |
S/G/Y/R/B/O |
NT_004511 | AL138837 | 32910451 | 3 | chr1 | NT_004511 | AC115285 | 33009324 | 3 | 17366 | 0 | 0 | 17366 |
S/G/Y/R/B/O |
NT_004511 | AC115285 | 33009324 | 3 | chr1 | NT_004511 | AL355178 | 33116744 | 3 | 46903 | 0 | 0 | 46903 |
S/G/Y/R/B/O |
NT_004511 | AC115285 | 33009324 | 3 |   |   | AC025303 | 32723647 | | 52755 | 2840 | 18235 | 73830 |
S/G/Y/R/B/O |
NT_004511 | AL355178 | 33116744 | 3 | chr1 | NT_004511 | AL161643 | 33174605 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL355178 | 33116744 | 3 |   |   | AC013800 | 33116744 | | 11426 | 0 | 0 | 11426 |
S/G/Y/R/B/O |
NT_004511 | AL355178 | 33116744 | 3 |   |   | AC025303 | 33116744 | | 63509 | 4933 | 11099 | 79541 |
S/G/Y/R/B/O |
NT_004511 | AL161643 | 33174605 | 3 | chr1 | NT_004511 | AL139140 | 33261367 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL161643 | 33174605 | 3 |   |   | AC013800 | 33174605 | | 88618 | 0 | 0 | 88618 |
S/G/Y/R/B/O |
NT_004511 | AL161643 | 33174605 | 3 |   |   | AC025303 | 33174605 | | 23831 | 0 | 1250 | 25081 |
S/G/Y/R/B/O |
NT_004511 | AL139140 | 33261367 | 3 | chr1 | NT_004511 | AL121980 | 33337596 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL139140 | 33261367 | 3 |   |   | AC013800 | 33116744 | | 53752 | 0 | 0 | 53752 |
S/G/Y/R/B/O |
NT_004511 | AL121980 | 33337596 | 3 | chr1 | NT_004511 | AC116993 | 33466200 | 3 | 30701 | 0 | 0 | 30701 |
S/G/Y/R/B/O |
NT_004511 | AL121980 | 33337596 | 3 |   |   | AC012250 | 33174605 | | 25347 | 0 | 0 | 25347 |
S/G/Y/R/B/O |
NT_004511 | AL121980 | 33337596 | 3 |   |   | AL662927 | 33261367 | | 25397 | 0 | 0 | 25397 |
S/G/Y/R/B/O |
NT_004511 | AC116993 | 33466200 | 3 | chr1 | NT_004511 | AL607106 | 33537384 | 3 | 0 | 0 | 1787 | 1787 |
S/G/Y/R/B/O |
NT_004511 | AC116993 | 33466200 | 3 |   |   | AC012250 | 33261367 | | 94642 | 0 | 0 | 94642 |
S/G/Y/R/B/O |
NT_004511 | AC116993 | 33466200 | 3 |   |   | AL662927 | 33537384 | | 96351 | 0 | 0 | 96351 |
S/G/Y/R/B/O |
NT_004511 | AL607106 | 33537384 | 3 | chr1 | NT_004511 | AL596224 | 33572161 | 3 | 0 | 0 | 1686 | 1686 |
S/G/Y/R/B/O |
NT_004511 | AL596224 | 33572161 | 3 | chr1 | NT_004511 | AC115286 | 33684945 | 3 | 0 | 0 | 1962 | 1962 |
S/G/Y/R/B/O |
NT_004511 | AL596224 | 33572161 | 3 |   |   | AC012250 | 33572161 | | 78195 | 0 | 2035 | 80230 |
S/G/Y/R/B/O |
NT_004511 | AL596224 | 33572161 | 3 |   |   | AC022251 | 33572161 | | 54502 | 1506 | 35950 | 91958 |
S/G/Y/R/B/O |
NT_004511 | AL596224 | 33572161 | 3 |   |   | AL359498 | 33684945 | | 30921 | 2323 | 0 | 33244 |
S/G/Y/R/B/O |
NT_004511 | AL596224 | 33572161 | 3 |   |   | AL662927 | 33537384 | | 80380 | 0 | 0 | 80380 |
S/G/Y/R/B/O |
NT_004511 | AC115286 | 33684945 | 3 | chr1 | NT_004511 | AL360092 | 33807942 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004511 | AC115286 | 33684945 | 3 |   |   | AC022251 | 33537384 | | 60787 | 0 | 0 | 60787 |
S/G/Y/R/B/O |
NT_004511 | AC115286 | 33684945 | 3 |   |   | AL359498 | 33537384 | | 25661 | 2165 | 17548 | 45374 |
S/G/Y/R/B/O |
NT_004511 | AL360092 | 33807942 | 3 | chr1 | NT_004511 | AL008634 | 33891631 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_004511 | AL008634 | 33891631 | 3 | chr1 | NT_004511 | AL365188 | 34042223 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL365188 | 34042223 | 3 | chr1 | NT_004511 | AC099565 | 34104714 | 3 | 0 | 0 | 1509 | 1509 |
S/G/Y/R/B/O |
NT_004511 | AC099565 | 34104714 | 3 | chr1 | NT_004511 | AL356256 | 34210792 | 3 | 0 | 0 | 1721 | 1721 |
S/G/Y/R/B/O |
NT_004511 | AL356256 | 34210792 | 3 | chr1 | NT_004511 | AL121988 | 34229445 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_004511 | AL121988 | 34229445 | 3 | chr1 | NT_004511 | AL122010 | 34354322 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004511 | AL122010 | 34354322 | 3 | chr1 | NT_004511 | AC114490 | 34399828 | 3 | 8046 | 0 | 0 | 8046 |
S/G/Y/R/B/O |
NT_004511 | AC114490 | 34399828 | 3 | chr1 | NT_004511 | AL607089 | 34544205 | 3 | 3811 | 0 | 0 | 3811 |
S/G/Y/R/B/O |
NT_004511 | AL607089 | 34544205 | 3 | chr1 | NT_004511 | AL590434 | 34638015 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_004511 | AL607089 | 34544205 | 3 |   |   | AC026026 | 34544205 | | 10840 | 2517 | 12681 | 26038 |
S/G/Y/R/B/O |
NT_004511 | AL590434 | 34638015 | 3 | chr1 | NT_004511 | AL160000 | 34819928 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AL590434 | 34638015 | 3 |   |   | AC026026 | 34638015 | | 31598 | 9608 | 22595 | 63801 |
S/G/Y/R/B/O |
NT_004511 | AL590434 | 34638015 | 3 |   |   | AC061970 | 34638015 | | 34660 | 7176 | 16328 | 58164 |
S/G/Y/R/B/O |
NT_004511 | AL160000 | 34819928 | 3 | chr1 | NT_004511 | AL356362 | 34864974 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL160000 | 34819928 | 3 |   |   | AC061970 | 34544205 | | 15043 | 12609 | 4252 | 31904 |
S/G/Y/R/B/O |
NT_004511 | AL356362 | 34864974 | 3 | chr1 | NT_004511 | AL445211 | 34979934 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL356362 | 34864974 | 3 |   |   | AL357733 | 34819928 | | 44109 | 0 | 6684 | 50793 |
S/G/Y/R/B/O |
NT_004511 | AL445211 | 34979934 | 3 | chr1 | NT_004511 | AC004865 | 34982830 | 3 | 0 | 1908 | 0 | 1908 |
S/G/Y/R/B/O |
NT_004511 | AC004865 | 34982830 | 3 | chr1 | NT_004511 | AL157951 | 35100918 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AC004865 | 34982830 | 3 |   |   | AL445260 | 34979934 | | 34436 | 2441 | 3442 | 40319 |
S/G/Y/R/B/O |
NT_004511 | AL157951 | 35100918 | 3 | chr1 | NT_004511 | AL357035 | 35130707 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AL357035 | 35130707 | 3 | chr1 | NT_004511 | AL354864 | 35143521 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL354864 | 35143521 | 3 | chr1 | NT_004511 | AL359186 | 35335817 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL354864 | 35143521 | 3 |   |   | AL139143 | 35143521 | | 39130 | 2792 | 19967 | 61889 |
S/G/Y/R/B/O |
NT_004511 | AL359186 | 35335817 | 3 | chr1 | NT_004511 | AL139286 | 35383430 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL359186 | 35335817 | 3 |   |   | AL139143 | 35335817 | | 25901 | 0 | 9422 | 35323 |
S/G/Y/R/B/O |
NT_004511 | AL139286 | 35383430 | 3 | chr1 | NT_004511 | AL138787 | 35519606 | 3 | 0 | 0 | 105 | 105 |
S/G/Y/R/B/O |
NT_004511 | AL139286 | 35383430 | 3 |   |   | AC012141 | 35143521 | | 25342 | 0 | 9807 | 35149 |
S/G/Y/R/B/O |
NT_004511 | AL139286 | 35383430 | 3 |   |   | AL138843 | 35519606 | | 23778 | 0 | 0 | 23778 |
S/G/Y/R/B/O |
NT_004511 | AL138787 | 35519606 | 3 | chr1 | NT_004511 | AC114484 | 35647634 | 3 | 16234 | 0 | 0 | 16234 |
S/G/Y/R/B/O |
NT_004511 | AL138787 | 35519606 | 3 |   |   | AC012141 | 35335817 | | 49792 | 6918 | 38182 | 94892 |
S/G/Y/R/B/O |
NT_004511 | AL138787 | 35519606 | 3 |   |   | AL138843 | 35647634 | | 52948 | 0 | 15897 | 68845 |
S/G/Y/R/B/O |
NT_004511 | AC114484 | 35647634 | 3 | chr1 | NT_004511 | AL360074 | 35750163 | 1 | 0 | 0 | 73154 | 73154 |
S/G/Y/R/B/O |
NT_004511 | AC114484 | 35647634 | 3 |   |   | AC012141 | 35383430 | | 22347 | 0 | 0 | 22347 |
S/G/Y/R/B/O |
NT_004511 | AL360074 | 35750163 | 1 | chr1 | NT_004511 | AL591845 | 35784316 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AL591845 | 35784316 | 3 | chr1 | NT_004511 | AC119675 | 35888623 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AC119675 | 35888623 | 3 | chr1 | NT_004511 | AL445245 | 36025562 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AL445245 | 36025562 | 3 | chr1 | NT_004511 | AL080286 | 36074674 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AL080286 | 36074674 | 3 | chr1 | NT_004511 | AL596257 | 36227952 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_004511 | AL596257 | 36227952 | 3 | chr1 | NT_004511 | AC117945 | 36286121 | 3 | 0 | 0 | 1629 | 1629 |
S/G/Y/R/B/O |
NT_004511 | AL596257 | 36227952 | 3 |   |   | AL356412 | 36074674 | | 20784 | 0 | 3296 | 24080 |
S/G/Y/R/B/O |
NT_004511 | AC117945 | 36286121 | 3 | chr1 | NT_004511 | AL591883 | 36444678 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004511 | AC117945 | 36286121 | 3 |   |   | AC026542 | 36074674 | | 85665 | 0 | 0 | 85665 |
S/G/Y/R/B/O |
NT_004511 | AC117945 | 36286121 | 3 |   |   | AL356412 | 36074674 | | 32146 | 0 | 30123 | 62269 |
S/G/Y/R/B/O |
NT_004511 | AL591883 | 36444678 | 3 | chr1 | NT_004511 | AL355386 | 36450465 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_004511 | AL355386 | 36450465 | 3 | chr1 | NT_004511 | AL031430 | 36581705 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004511 | AL355386 | 36450465 | 3 |   |   | AC026542 | 36450465 | | 86947 | 2568 | 11981 | 101496 |
S/G/Y/R/B/O |
NT_004511 | AL355386 | 36450465 | 3 |   |   | AL359635 | 36581705 | | 55324 | 14460 | 11248 | 81032 |
S/G/Y/R/B/O |
NT_004511 | AL355386 | 36450465 | 3 |   |   | AL359966 | 36581705 | | 94197 | 5308 | 3138 | 102643 |
S/G/Y/R/B/O |
NT_004511 | AL355386 | 36450465 | 3 |   |   | AL360016 | 36581705 | | 11405 | 17098 | 0 | 28503 |
S/G/Y/R/B/O |
NT_004511 | AL031430 | 36581705 | 3 | chr1 | NT_004511 | AL590127 | 36740886 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AL031430 | 36581705 | 3 |   |   | AC027191 | 36444678 | | 78877 | 16175 | 20039 | 115091 |
S/G/Y/R/B/O |
NT_004511 | AL031430 | 36581705 | 3 |   |   | AL359635 | 36450465 | | 22907 | 16806 | 5461 | 45174 |
S/G/Y/R/B/O |
NT_004511 | AL031430 | 36581705 | 3 |   |   | AL359966 | 36450465 | | 40098 | 0 | 16111 | 56209 |
S/G/Y/R/B/O |
NT_004511 | AL590127 | 36740886 | 3 | chr1 | NT_004511 | AL353604 | 36780350 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004511 | AL353604 | 36780350 | 3 | chr1 | NT_004511 | AL033524 | 36841747 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_004511 | AL033524 | 36841747 | 3 | chr1 | NT_004511 | AL449284 | 36943375 | 3 | 0 | 1991 | 0 | 1991 |
S/G/Y/R/B/O |
NT_004511 | AL449284 | 36943375 | 3 | chr1 | NT_004511 | AL034379 | 36999104 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL449284 | 36943375 | 3 |   |   | AL355880 | 36999104 | | 34596 | 0 | 0 | 34596 |
S/G/Y/R/B/O |
NT_004511 | AL034379 | 36999104 | 3 | chr1 | NT_004511 | AL513220 | 37109328 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004511 | AL034379 | 36999104 | 3 |   |   | AL355880 | 36999104 | | 112110 | 0 | 0 | 112110 |
S/G/Y/R/B/O |
NT_004511 | AL513220 | 37109328 | 3 | chr1 | NT_004511 | AC104336 | 37201966 | 3 | 0 | 0 | 1744 | 1744 |
S/G/Y/R/B/O |
NT_004511 | AL513220 | 37109328 | 3 |   |   | AC023225 | 37109328 | | 15680 | 0 | 0 | 15680 |
S/G/Y/R/B/O |
NT_004511 | AC104336 | 37201966 | 3 | chr1 | NT_004511 | AL929472 | 37334132 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004511 | AC104336 | 37201966 | 3 | chr1 | NT_004511 | AC022557 | 37338890 | 1 | 15129 | 0 | 1176 | 16305 |
S/G/Y/R/B/O |
NT_004511 | AC104336 | 37201966 | 3 |   |   | AC023225 | 37338890 | | 73926 | 2293 | 34063 | 110282 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 | chr1 | NT_004511 | AC022557 | 37338890 | 1 | 19665 | 0 | 1177 | 20842 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AC023225 | 37338890 | | 62396 | 2311 | 28705 | 93412 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AC023225 | 37338890 | | 62396 | 2311 | 28705 | 93412 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AL513473 | 129743825 | | 55927 | 0 | 19197 | 75124 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AL513473 | 129743825 | | 55927 | 0 | 19197 | 75124 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AL603790 | 129743825 | | 19665 | 0 | 0 | 19665 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AL603790 | 129743825 | | 19665 | 0 | 0 | 19665 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AL603790 | 129743825 | | 19665 | 0 | 0 | 19665 |
S/G/Y/R/B/O |
NT_004511 | AL929472 | 37334132 | 1 |   |   | AL603790 | 129743825 | | 19665 | 0 | 0 | 19665 |
S/G/Y/R/B/O |
NT_004511 | AC022557 | 37338890 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_004511 | AC022557 | 37338890 | 1 | chr1 | NT_004511 | AC104336 | 37201966 | 3 | 15129 | 0 | 1176 | 16305 |
S/G/Y/R/B/O |
NT_004511 | AC022557 | 37338890 | 1 |   |   | AC023225 | 129743825 | | 45397 | 0 | 1029 | 46426 |
S/G/Y/R/B/O |
NT_004511 | AC022557 | 37338890 | 1 |   |   | AL513473 | 37201966 | | 82325 | 0 | 16475 | 98800 |
S/G/Y/R/B/O |
NT_004511 | AC022557 | 37338890 | 1 |   |   | AL603790 | 37201966 | | 62933 | 5407 | 6655 | 74995 |
S/G/Y/R/B/O |
NT_004511 | AC022557 | 37338890 | 1 |   |   | AL603790 | 37201966 | | 62933 | 5407 | 6655 | 74995 |
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