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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_021877 | AC069001 | 201800867 | 1 | chr1 | NT_021877 | AL592494 | 201806007 | 3 | 39514 | 0 | 11229 | 50743 |
S/G/Y/R/B/O |
NT_021877 | AL592494 | 201806007 | 3 | chr1 | NT_021877 | AL358175 | 201971915 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL358175 | 201971915 | 3 | chr1 | NT_021877 | AL078463 | 202065662 | 3 | 0 | 1964 | 0 | 1964 |
S/G/Y/R/B/O |
NT_021877 | AL358175 | 201971915 | 3 | chr1 | NT_021877 | AC013411 | 202238068 | 1 | 39517 | 0 | 10200 | 49717 |
S/G/Y/R/B/O |
NT_021877 | AL078463 | 202065662 | 3 | chr1 | NT_021877 | AC013411 | 202238068 | 1 | 16273 | 0 | 0 | 16273 |
S/G/Y/R/B/O |
NT_021877 | AL078463 | 202065662 | 3 |   |   | AL357493 | 202247114 | | 83825 | 4816 | 8949 | 97590 |
S/G/Y/R/B/O |
NT_021877 | AC013411 | 202238068 | 1 | chr1 | NT_021877 | AL161736 | 202247114 | 3 | 25896 | 0 | 13594 | 39490 |
S/G/Y/R/B/O |
NT_021877 | AC013411 | 202238068 | 1 | chr1 | NT_021877 | AC103539 | 206507738 | 1 | 39859 | 11636 | 10179 | 61674 |
S/G/Y/R/B/O |
NT_021877 | AC013411 | 202238068 | 1 | chr1 | NT_021877 | AL358175 | 201971915 | 3 | 39517 | 0 | 10200 | 49717 |
S/G/Y/R/B/O |
NT_021877 | AC013411 | 202238068 | 1 |   |   | AC010098 | 201971915 | | 16899 | 7760 | 30003 | 54662 |
S/G/Y/R/B/O |
NT_021877 | AL161736 | 202247114 | 3 | chr1 | NT_021877 | AL354681 | 202351916 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_021877 | AL354681 | 202351916 | 3 | chr1 | NT_021877 | AL591846 | 202457605 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_021877 | AL591846 | 202457605 | 3 | chr1 | NT_021877 | AL513315 | 202651090 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_021877 | AL591846 | 202457605 | 3 |   |   | AL445652 | 202351916 | | 91054 | 2934 | 0 | 93988 |
S/G/Y/R/B/O |
NT_021877 | AL591846 | 202457605 | 3 |   |   | AL445993 | 202351916 | | 24732 | 21882 | 5736 | 52350 |
S/G/Y/R/B/O |
NT_021877 | AL513315 | 202651090 | 3 | chr1 | NT_021877 | AC098935 | 202733537 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL513315 | 202651090 | 3 |   |   | AC068122 | 202651090 | | 29437 | 12269 | 27604 | 69310 |
S/G/Y/R/B/O |
NT_021877 | AL513315 | 202651090 | 3 |   |   | AL445652 | 202651090 | | 55971 | 7959 | 11456 | 75386 |
S/G/Y/R/B/O |
NT_021877 | AL513315 | 202651090 | 3 |   |   | AL445993 | 202651090 | | 17282 | 15110 | 4321 | 36713 |
S/G/Y/R/B/O |
NT_021877 | AC098935 | 202733537 | 3 | chr1 | NT_021877 | AL589672 | 202924102 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_021877 | AC098935 | 202733537 | 3 |   |   | AC023534 | 202457605 | | 115407 | 8456 | 22738 | 146601 |
S/G/Y/R/B/O |
NT_021877 | AC098935 | 202733537 | 3 |   |   | AC068122 | 202457605 | | 48978 | 4159 | 30033 | 83170 |
S/G/Y/R/B/O |
NT_021877 | AL589672 | 202924102 | 3 | chr1 | NT_021877 | AL445493 | 202926096 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_021877 | AL445493 | 202926096 | 3 | chr1 | NT_021877 | AL596218 | 203083035 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL445493 | 202926096 | 3 |   |   | AC023534 | 202926096 | | 26855 | 1627 | 20741 | 49223 |
S/G/Y/R/B/O |
NT_021877 | AL596218 | 203083035 | 3 | chr1 | NT_021877 | AL391597 | 203211970 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_021877 | AL596218 | 203083035 | 3 |   |   | AC031978 | 202924102 | | 22479 | 0 | 0 | 22479 |
S/G/Y/R/B/O |
NT_021877 | AL596218 | 203083035 | 3 |   |   | AL355527 | 202924102 | | 36067 | 4521 | 17582 | 58170 |
S/G/Y/R/B/O |
NT_021877 | AL596218 | 203083035 | 3 |   |   | AL928884 | 203211970 | | 114761 | 0 | 0 | 114761 |
S/G/Y/R/B/O |
NT_021877 | AL391597 | 203211970 | 3 | chr1 | NT_021877 | AL691452 | 203351094 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_021877 | AL391597 | 203211970 | 3 |   |   | AC031978 | 203211970 | | 106846 | 0 | 34050 | 140896 |
S/G/Y/R/B/O |
NT_021877 | AL391597 | 203211970 | 3 |   |   | AL160003 | 203211970 | | 60359 | 0 | 0 | 60359 |
S/G/Y/R/B/O |
NT_021877 | AL391597 | 203211970 | 3 |   |   | AL355527 | 203211970 | | 14599 | 2125 | 7740 | 24464 |
S/G/Y/R/B/O |
NT_021877 | AL691452 | 203351094 | 3 | chr1 | NT_021877 | AL137789 | 203457384 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL691452 | 203351094 | 3 |   |   | AL160003 | 203351094 | | 45193 | 2970 | 0 | 48163 |
S/G/Y/R/B/O |
NT_021877 | AL137789 | 203457384 | 3 | chr1 | NT_021877 | AL365178 | 203600709 | 3 | 0 | 1993 | 0 | 1993 |
S/G/Y/R/B/O |
NT_021877 | AL365178 | 203600709 | 3 | chr1 | NT_021877 | AL035209 | 203668560 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_021877 | AL035209 | 203668560 | 3 | chr1 | NT_021877 | AL356275 | 203746111 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_021877 | AL035209 | 203668560 | 3 |   |   | AC084393 | 203457384 | | 77504 | 0 | 0 | 77504 |
S/G/Y/R/B/O |
NT_021877 | AL356275 | 203746111 | 3 | chr1 | NT_021877 | AL590138 | 203943016 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_021877 | AL356275 | 203746111 | 3 |   |   | AC084393 | 203600709 | | 69355 | 0 | 0 | 69355 |
S/G/Y/R/B/O |
NT_021877 | AL356275 | 203746111 | 3 |   |   | AL158017 | 203668560 | | 73103 | 0 | 0 | 73103 |
S/G/Y/R/B/O |
NT_021877 | AL590138 | 203943016 | 3 | chr1 | NT_021877 | AL606753 | 204105073 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_021877 | AL590138 | 203943016 | 3 |   |   | AC016454 | 203943016 | | 95099 | 0 | 0 | 95099 |
S/G/Y/R/B/O |
NT_021877 | AL590138 | 203943016 | 3 |   |   | AL158017 | 203943016 | | 47061 | 0 | 0 | 47061 |
S/G/Y/R/B/O |
NT_021877 | AL590138 | 203943016 | 3 |   |   | AL391234 | 203746111 | | 88573 | 5170 | 0 | 93743 |
S/G/Y/R/B/O |
NT_021877 | AL606753 | 204105073 | 3 | chr1 | NT_021877 | AL662918 | 204170057 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_021877 | AL606753 | 204105073 | 3 |   |   | AC016454 | 204105073 | | 66974 | 0 | 0 | 66974 |
S/G/Y/R/B/O |
NT_021877 | AL606753 | 204105073 | 3 |   |   | AL355533 | 204105073 | | 17602 | 4998 | 2997 | 25597 |
S/G/Y/R/B/O |
NT_021877 | AL606753 | 204105073 | 3 |   |   | AL391234 | 204105073 | | 27122 | 2115 | 20437 | 49674 |
S/G/Y/R/B/O |
NT_021877 | AL662918 | 204170057 | 3 | chr1 | NT_021877 | AC096674 | 204258197 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_021877 | AL662918 | 204170057 | 3 |   |   | AC010734 | 204170057 | | 66453 | 0 | 0 | 66453 |
S/G/Y/R/B/O |
NT_021877 | AL662918 | 204170057 | 3 |   |   | AC026276 | 204170057 | | 66456 | 0 | 0 | 66456 |
S/G/Y/R/B/O |
NT_021877 | AL662918 | 204170057 | 3 |   |   | AL391234 | 204258197 | | 20115 | 0 | 0 | 20115 |
S/G/Y/R/B/O |
NT_021877 | AC096674 | 204258197 | 3 | chr1 | NT_021877 | AL451184 | 204432944 | 3 | 0 | 1929 | 0 | 1929 |
S/G/Y/R/B/O |
NT_021877 | AC096674 | 204258197 | 3 |   |   | AC010734 | 204105073 | | 83950 | 0 | 23514 | 107464 |
S/G/Y/R/B/O |
NT_021877 | AL451184 | 204432944 | 3 | chr1 | NT_021877 | AC099793 | 204468599 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_021877 | AC099793 | 204468599 | 3 | chr1 | NT_021877 | AC093421 | 204636434 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AC099793 | 204468599 | 3 |   |   | AC119750 | 204468599 | | 116789 | 0 | 0 | 116789 |
S/G/Y/R/B/O |
NT_021877 | AC093421 | 204636434 | 3 | chr1 | NT_021877 | AL445254 | 204820408 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_021877 | AC093421 | 204636434 | 3 |   |   | AC119750 | 204432944 | | 54683 | 0 | 0 | 54683 |
S/G/Y/R/B/O |
NT_021877 | AL445254 | 204820408 | 3 | chr1 | NT_021877 | AC104465 | 204826755 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_021877 | AC104465 | 204826755 | 3 | chr1 | NT_021877 | AC118560 | 204965231 | 3 | 6611 | 0 | 0 | 6611 |
S/G/Y/R/B/O |
NT_021877 | AC118560 | 204965231 | 3 | chr1 | NT_021877 | AC092810 | 204978868 | 3 | 0 | 937 | 0 | 937 |
S/G/Y/R/B/O |
NT_021877 | AC092810 | 204978868 | 3 | chr1 | NT_021877 | AL589741 | 205151846 | 3 | 54718 | 0 | 0 | 54718 |
S/G/Y/R/B/O |
NT_021877 | AC092810 | 204978868 | 3 |   |   | AC027737 | 204826755 | | 22560 | 4652 | 5252 | 32464 |
S/G/Y/R/B/O |
NT_021877 | AC092810 | 204978868 | 3 |   |   | AL391066 | 204965231 | | 80106 | 0 | 0 | 80106 |
S/G/Y/R/B/O |
NT_021877 | AL589741 | 205151846 | 3 | chr1 | NT_021877 | AL035408 | 205256459 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_021877 | AL589741 | 205151846 | 3 |   |   | AC027737 | 205151846 | | 104516 | 1553 | 7598 | 113667 |
S/G/Y/R/B/O |
NT_021877 | AL589741 | 205151846 | 3 |   |   | AL391066 | 205256459 | | 134644 | 0 | 0 | 134644 |
S/G/Y/R/B/O |
NT_021877 | AL035408 | 205256459 | 3 | chr1 | NT_021877 | AL023754 | 205344889 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL035408 | 205256459 | 3 |   |   | AC027737 | 205256459 | | 28988 | 2598 | 11216 | 42802 |
S/G/Y/R/B/O |
NT_021877 | AL023754 | 205344889 | 3 | chr1 | NT_021877 | AL031316 | 205502664 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_021877 | AL031316 | 205502664 | 3 | chr1 | NT_021877 | AL022398 | 205600264 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL022398 | 205600264 | 3 | chr1 | NT_021877 | AL022728 | 205736092 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_021877 | AL022728 | 205736092 | 3 | chr1 | NT_021877 | AL035046 | 205762516 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_021877 | AL035046 | 205762516 | 3 | chr1 | NT_021877 | AL022399 | 205782390 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL022399 | 205782390 | 3 | chr1 | NT_021877 | AL022397 | 205866754 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AL022397 | 205866754 | 3 | chr1 | NT_021877 | AL513263 | 205975954 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_021877 | AL022397 | 205866754 | 3 |   |   | AL355335 | 205736092 | | 50632 | 2607 | 22705 | 75944 |
S/G/Y/R/B/O |
NT_021877 | AL513263 | 205975954 | 3 | chr1 | NT_021877 | AL035414 | 206099506 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_021877 | AL513263 | 205975954 | 3 |   |   | AL355335 | 206099506 | | 32641 | 6505 | 0 | 39146 |
S/G/Y/R/B/O |
NT_021877 | AL513263 | 205975954 | 3 |   |   | AL356960 | 206099506 | | 15699 | 2429 | 12906 | 31034 |
S/G/Y/R/B/O |
NT_021877 | AL035414 | 206099506 | 3 | chr1 | NT_021877 | AL034351 | 206228747 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_021877 | AL035414 | 206099506 | 3 |   |   | AL356960 | 206228747 | | 37979 | 11163 | 54204 | 103346 |
S/G/Y/R/B/O |
NT_021877 | AL035414 | 206099506 | 3 |   |   | AL360077 | 206228747 | | 42773 | 0 | 14983 | 57756 |
S/G/Y/R/B/O |
NT_021877 | AL034351 | 206228747 | 3 | chr1 | NT_021877 | AL590653 | 206366325 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_021877 | AL590653 | 206366325 | 3 | chr1 | NT_021877 | AC103539 | 206507738 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_021877 | AC103539 | 206507738 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_021877 | AC103539 | 206507738 | 1 | chr1 | NT_021877 | AC013411 | 202238068 | 1 | 39859 | 11636 | 10179 | 61674 |
S/G/Y/R/B/O |
NT_021877 | AC103539 | 206507738 | 1 |   |   | AC010098 | 206228747 | | 29825 | 5301 | 8586 | 43712 |
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