Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_021877

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_021877	AC069001	201800867	1	chr1	NT_021877	AL592494	201806007	3	39514	0	11229	50743
S/G/Y/R/B/O	NT_021877	AL592494	201806007	3	chr1	NT_021877	AL358175	201971915	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL358175	201971915	3	chr1	NT_021877	AL078463	202065662	3	0	1964	0	1964
S/G/Y/R/B/O	NT_021877	AL358175	201971915	3	chr1	NT_021877	AC013411	202238068	1	39517	0	10200	49717
S/G/Y/R/B/O	NT_021877	AL078463	202065662	3	chr1	NT_021877	AC013411	202238068	1	16273	0	0	16273
S/G/Y/R/B/O	NT_021877	AL078463	202065662	3			AL357493	202247114		83825	4816	8949	97590
S/G/Y/R/B/O	NT_021877	AC013411	202238068	1	chr1	NT_021877	AL161736	202247114	3	25896	0	13594	39490
S/G/Y/R/B/O	NT_021877	AC013411	202238068	1	chr1	NT_021877	AC103539	206507738	1	39859	11636	10179	61674
S/G/Y/R/B/O	NT_021877	AC013411	202238068	1	chr1	NT_021877	AL358175	201971915	3	39517	0	10200	49717
S/G/Y/R/B/O	NT_021877	AC013411	202238068	1			AC010098	201971915		16899	7760	30003	54662
S/G/Y/R/B/O	NT_021877	AL161736	202247114	3	chr1	NT_021877	AL354681	202351916	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL354681	202351916	3	chr1	NT_021877	AL591846	202457605	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL591846	202457605	3	chr1	NT_021877	AL513315	202651090	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AL591846	202457605	3			AL445652	202351916		91054	2934	0	93988
S/G/Y/R/B/O	NT_021877	AL591846	202457605	3			AL445993	202351916		24732	21882	5736	52350
S/G/Y/R/B/O	NT_021877	AL513315	202651090	3	chr1	NT_021877	AC098935	202733537	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL513315	202651090	3			AC068122	202651090		29437	12269	27604	69310
S/G/Y/R/B/O	NT_021877	AL513315	202651090	3			AL445652	202651090		55971	7959	11456	75386
S/G/Y/R/B/O	NT_021877	AL513315	202651090	3			AL445993	202651090		17282	15110	4321	36713
S/G/Y/R/B/O	NT_021877	AC098935	202733537	3	chr1	NT_021877	AL589672	202924102	3	0	1998	0	1998
S/G/Y/R/B/O	NT_021877	AC098935	202733537	3			AC023534	202457605		115407	8456	22738	146601
S/G/Y/R/B/O	NT_021877	AC098935	202733537	3			AC068122	202457605		48978	4159	30033	83170
S/G/Y/R/B/O	NT_021877	AL589672	202924102	3	chr1	NT_021877	AL445493	202926096	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL445493	202926096	3	chr1	NT_021877	AL596218	203083035	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL445493	202926096	3			AC023534	202926096		26855	1627	20741	49223
S/G/Y/R/B/O	NT_021877	AL596218	203083035	3	chr1	NT_021877	AL391597	203211970	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL596218	203083035	3			AC031978	202924102		22479	0	0	22479
S/G/Y/R/B/O	NT_021877	AL596218	203083035	3			AL355527	202924102		36067	4521	17582	58170
S/G/Y/R/B/O	NT_021877	AL596218	203083035	3			AL928884	203211970		114761	0	0	114761
S/G/Y/R/B/O	NT_021877	AL391597	203211970	3	chr1	NT_021877	AL691452	203351094	3	0	1996	0	1996
S/G/Y/R/B/O	NT_021877	AL391597	203211970	3			AC031978	203211970		106846	0	34050	140896
S/G/Y/R/B/O	NT_021877	AL391597	203211970	3			AL160003	203211970		60359	0	0	60359
S/G/Y/R/B/O	NT_021877	AL391597	203211970	3			AL355527	203211970		14599	2125	7740	24464
S/G/Y/R/B/O	NT_021877	AL691452	203351094	3	chr1	NT_021877	AL137789	203457384	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL691452	203351094	3			AL160003	203351094		45193	2970	0	48163
S/G/Y/R/B/O	NT_021877	AL137789	203457384	3	chr1	NT_021877	AL365178	203600709	3	0	1993	0	1993
S/G/Y/R/B/O	NT_021877	AL365178	203600709	3	chr1	NT_021877	AL035209	203668560	3	0	1996	0	1996
S/G/Y/R/B/O	NT_021877	AL035209	203668560	3	chr1	NT_021877	AL356275	203746111	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL035209	203668560	3			AC084393	203457384		77504	0	0	77504
S/G/Y/R/B/O	NT_021877	AL356275	203746111	3	chr1	NT_021877	AL590138	203943016	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AL356275	203746111	3			AC084393	203600709		69355	0	0	69355
S/G/Y/R/B/O	NT_021877	AL356275	203746111	3			AL158017	203668560		73103	0	0	73103
S/G/Y/R/B/O	NT_021877	AL590138	203943016	3	chr1	NT_021877	AL606753	204105073	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AL590138	203943016	3			AC016454	203943016		95099	0	0	95099
S/G/Y/R/B/O	NT_021877	AL590138	203943016	3			AL158017	203943016		47061	0	0	47061
S/G/Y/R/B/O	NT_021877	AL590138	203943016	3			AL391234	203746111		88573	5170	0	93743
S/G/Y/R/B/O	NT_021877	AL606753	204105073	3	chr1	NT_021877	AL662918	204170057	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AL606753	204105073	3			AC016454	204105073		66974	0	0	66974
S/G/Y/R/B/O	NT_021877	AL606753	204105073	3			AL355533	204105073		17602	4998	2997	25597
S/G/Y/R/B/O	NT_021877	AL606753	204105073	3			AL391234	204105073		27122	2115	20437	49674
S/G/Y/R/B/O	NT_021877	AL662918	204170057	3	chr1	NT_021877	AC096674	204258197	3	0	1997	0	1997
S/G/Y/R/B/O	NT_021877	AL662918	204170057	3			AC010734	204170057		66453	0	0	66453
S/G/Y/R/B/O	NT_021877	AL662918	204170057	3			AC026276	204170057		66456	0	0	66456
S/G/Y/R/B/O	NT_021877	AL662918	204170057	3			AL391234	204258197		20115	0	0	20115
S/G/Y/R/B/O	NT_021877	AC096674	204258197	3	chr1	NT_021877	AL451184	204432944	3	0	1929	0	1929
S/G/Y/R/B/O	NT_021877	AC096674	204258197	3			AC010734	204105073		83950	0	23514	107464
S/G/Y/R/B/O	NT_021877	AL451184	204432944	3	chr1	NT_021877	AC099793	204468599	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AC099793	204468599	3	chr1	NT_021877	AC093421	204636434	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AC099793	204468599	3			AC119750	204468599		116789	0	0	116789
S/G/Y/R/B/O	NT_021877	AC093421	204636434	3	chr1	NT_021877	AL445254	204820408	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AC093421	204636434	3			AC119750	204432944		54683	0	0	54683
S/G/Y/R/B/O	NT_021877	AL445254	204820408	3	chr1	NT_021877	AC104465	204826755	3	0	1996	0	1996
S/G/Y/R/B/O	NT_021877	AC104465	204826755	3	chr1	NT_021877	AC118560	204965231	3	6611	0	0	6611
S/G/Y/R/B/O	NT_021877	AC118560	204965231	3	chr1	NT_021877	AC092810	204978868	3	0	937	0	937
S/G/Y/R/B/O	NT_021877	AC092810	204978868	3	chr1	NT_021877	AL589741	205151846	3	54718	0	0	54718
S/G/Y/R/B/O	NT_021877	AC092810	204978868	3			AC027737	204826755		22560	4652	5252	32464
S/G/Y/R/B/O	NT_021877	AC092810	204978868	3			AL391066	204965231		80106	0	0	80106
S/G/Y/R/B/O	NT_021877	AL589741	205151846	3	chr1	NT_021877	AL035408	205256459	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL589741	205151846	3			AC027737	205151846		104516	1553	7598	113667
S/G/Y/R/B/O	NT_021877	AL589741	205151846	3			AL391066	205256459		134644	0	0	134644
S/G/Y/R/B/O	NT_021877	AL035408	205256459	3	chr1	NT_021877	AL023754	205344889	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL035408	205256459	3			AC027737	205256459		28988	2598	11216	42802
S/G/Y/R/B/O	NT_021877	AL023754	205344889	3	chr1	NT_021877	AL031316	205502664	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL031316	205502664	3	chr1	NT_021877	AL022398	205600264	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL022398	205600264	3	chr1	NT_021877	AL022728	205736092	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL022728	205736092	3	chr1	NT_021877	AL035046	205762516	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL035046	205762516	3	chr1	NT_021877	AL022399	205782390	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL022399	205782390	3	chr1	NT_021877	AL022397	205866754	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL022397	205866754	3	chr1	NT_021877	AL513263	205975954	3	2001	0	0	2001
S/G/Y/R/B/O	NT_021877	AL022397	205866754	3			AL355335	205736092		50632	2607	22705	75944
S/G/Y/R/B/O	NT_021877	AL513263	205975954	3	chr1	NT_021877	AL035414	206099506	3	0	1997	0	1997
S/G/Y/R/B/O	NT_021877	AL513263	205975954	3			AL355335	206099506		32641	6505	0	39146
S/G/Y/R/B/O	NT_021877	AL513263	205975954	3			AL356960	206099506		15699	2429	12906	31034
S/G/Y/R/B/O	NT_021877	AL035414	206099506	3	chr1	NT_021877	AL034351	206228747	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL035414	206099506	3			AL356960	206228747		37979	11163	54204	103346
S/G/Y/R/B/O	NT_021877	AL035414	206099506	3			AL360077	206228747		42773	0	14983	57756
S/G/Y/R/B/O	NT_021877	AL034351	206228747	3	chr1	NT_021877	AL590653	206366325	3	0	1996	0	1996
S/G/Y/R/B/O	NT_021877	AL590653	206366325	3	chr1	NT_021877	AC103539	206507738	1	0	0	0	0
S/G/Y/R/B/O	NT_021877	AC103539	206507738	1
S/G/Y/R/B/O	NT_021877	AC103539	206507738	1	chr1	NT_021877	AC013411	202238068	1	39859	11636	10179	61674
S/G/Y/R/B/O	NT_021877	AC103539	206507738	1			AC010098	206228747		29825	5301	8586	43712