Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004464

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004464	AC031997	68251208	1	chr1	NT_004464	AL691520	68261577	3	13504	8909	4076	26489
S/G/Y/R/B/O	NT_004464	AC031997	68251208	1	chr1	NT_004464	AL356106	68477687	3	12358	4773	0	17131
S/G/Y/R/B/O	NT_004464	AC031997	68251208	1			AL583851	68477687		14158	11936	10821	36915
S/G/Y/R/B/O	NT_004464	AC031997	68251208	1			AL645475	68477687		15690	11481	2318	29489
S/G/Y/R/B/O	NT_004464	AL691520	68261577	3	chr1	NT_004464	AL356106	68477687	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL691520	68261577	3			AL583851	68251208		57090	0	0	57090
S/G/Y/R/B/O	NT_004464	AL356106	68477687	3	chr1	NT_004464	AL358854	68530166	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL356106	68477687	3	chr1	NT_004464	AC031997	68251208	1	12358	4773	0	17131
S/G/Y/R/B/O	NT_004464	AL356106	68477687	3			AL583851	68251208		37113	0	0	37113
S/G/Y/R/B/O	NT_004464	AL358854	68530166	3	chr1	NT_004464	AL512271	68613274	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004464	AL512271	68613274	3	chr1	NT_004464	AL157406	68744194	3	0	0	1730	1730
S/G/Y/R/B/O	NT_004464	AL512271	68613274	3			AC021495	68613274		67264	0	9682	76946
S/G/Y/R/B/O	NT_004464	AL157406	68744194	3	chr1	NT_004464	AL359894	68865267	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL359894	68865267	3	chr1	NT_004464	AL117353	69026207	3	0	0	100	100
S/G/Y/R/B/O	NT_004464	AL359894	68865267	3			AL139153	69026207		31064	2530	0	33594
S/G/Y/R/B/O	NT_004464	AL117353	69026207	3	chr1	NT_004464	AL359412	69139622	3	0	0	100	100
S/G/Y/R/B/O	NT_004464	AL117353	69026207	3			AC055743	69026207		15267	0	0	15267
S/G/Y/R/B/O	NT_004464	AL359412	69139622	3	chr1	NT_004464	AL391728	69202007	3	0	1913	0	1913
S/G/Y/R/B/O	NT_004464	AL359412	69139622	3			AC055743	68865267		33186	1180	0	34366
S/G/Y/R/B/O	NT_004464	AL391728	69202007	3	chr1	NT_004464	AL158840	69353757	3	0	1984	0	1984
S/G/Y/R/B/O	NT_004464	AL391728	69202007	3			AC055743	69202007		105128	0	0	105128
S/G/Y/R/B/O	NT_004464	AL158840	69353757	3	chr1	NT_004464	AL157948	69439422	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004464	AL158840	69353757	3			AC025738	69139622		87649	0	0	87649
S/G/Y/R/B/O	NT_004464	AL157948	69439422	3	chr1	NT_004464	AL353771	69532292	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004464	AL157948	69439422	3			AC019213	69202007		11464	0	0	11464
S/G/Y/R/B/O	NT_004464	AL157948	69439422	3			AC025738	69202007		53715	0	0	53715
S/G/Y/R/B/O	NT_004464	AL353771	69532292	3	chr1	NT_004464	AL354721	69661904	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004464	AL353771	69532292	3			AC019213	69532292		100955	5509	15053	121517
S/G/Y/R/B/O	NT_004464	AL354721	69661904	3	chr1	NT_004464	AL158839	69716974	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004464	AL354721	69661904	3			AC019213	69661904		12024	2984	9752	24760
S/G/Y/R/B/O	NT_004464	AL158839	69716974	3	chr1	NT_004464	AL354872	69785084	3	0	1991	0	1991
S/G/Y/R/B/O	NT_004464	AL354872	69785084	3	chr1	NT_004464	AL592104	69934862	3	0	1992	0	1992
S/G/Y/R/B/O	NT_004464	AL354872	69785084	3			AC026545	69785084		78957	0	20026	98983
S/G/Y/R/B/O	NT_004464	AL354872	69785084	3			AL445425	69716974		66576	0	0	66576
S/G/Y/R/B/O	NT_004464	AL592104	69934862	3	chr1	NT_004464	AL513285	70064351	3	0	0	1785	1785
S/G/Y/R/B/O	NT_004464	AL592104	69934862	3			AL355524	69785084		94824	0	0	94824
S/G/Y/R/B/O	NT_004464	AL513285	70064351	3	chr1	NT_004464	AL662898	70160329	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL513285	70064351	3			AL355524	70064351		41042	0	7277	48319
S/G/Y/R/B/O	NT_004464	AL662898	70160329	3	chr1	NT_004464	AL158087	70163622	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL158087	70163622	3	chr1	NT_004464	AL031429	70314311	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL158087	70163622	3			AL139422	69934862		20585	0	36377	56962
S/G/Y/R/B/O	NT_004464	AL031429	70314311	3	chr1	NT_004464	AL512443	70445532	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004464	AL031429	70314311	3			AL139422	69934862		30644	2905	9260	42809
S/G/Y/R/B/O	NT_004464	AL512443	70445532	3	chr1	NT_004464	AL360297	70499145	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL360297	70499145	3	chr1	NT_004464	AL358453	70667026	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004464	AL360297	70499145	3			AC011108	70314311		42516	0	2902	45418
S/G/Y/R/B/O	NT_004464	AL360297	70499145	3			AC024981	70314311		46136	10541	15276	71953
S/G/Y/R/B/O	NT_004464	AL360297	70499145	3			AC073627	70314311		44660	0	0	44660
S/G/Y/R/B/O	NT_004464	AL358453	70667026	3	chr1	NT_004464	AL627317	70773961	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL358453	70667026	3			AC024981	70667026		43520	1824	13670	59014
S/G/Y/R/B/O	NT_004464	AL358453	70667026	3			AC027532	70667026		45712	7107	6277	59096
S/G/Y/R/B/O	NT_004464	AL358453	70667026	3			AC073627	70667026		58332	0	4433	62765
S/G/Y/R/B/O	NT_004464	AL627317	70773961	3	chr1	NT_004464	AL354949	70865594	3	0	1940	0	1940
S/G/Y/R/B/O	NT_004464	AL627317	70773961	3			AC027532	70499145		32122	1636	501	34259
S/G/Y/R/B/O	NT_004464	AL627317	70773961	3			AC113411	70499145		89451	0	0	89451
S/G/Y/R/B/O	NT_004464	AL354949	70865594	3	chr1	NT_004464	AL355590	71044163	3	0	1992	0	1992
S/G/Y/R/B/O	NT_004464	AL355590	71044163	3	chr1	NT_004464	AL359821	71079933	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004464	AL359821	71079933	3	chr1	NT_004464	AL356600	71195886	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004464	AL359821	71079933	3			AC021416	71079933		69456	2362	26008	97826
S/G/Y/R/B/O	NT_004464	AL356600	71195886	3	chr1	NT_004464	AL391239	71325343	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004464	AL356600	71195886	3			AC009694	71195886		81631	0	0	81631
S/G/Y/R/B/O	NT_004464	AL356600	71195886	3			AC021416	71195886		25712	0	0	25712
S/G/Y/R/B/O	NT_004464	AL356600	71195886	3			AL158079	71195886		22978	4009	8836	35823
S/G/Y/R/B/O	NT_004464	AL391239	71325343	3	chr1	NT_004464	AL645767	71397711	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004464	AL391239	71325343	3			AC009694	71325343		25525	0	20669	46194
S/G/Y/R/B/O	NT_004464	AL391239	71325343	3			AC023656	71325343		17073	0	2038	19111
S/G/Y/R/B/O	NT_004464	AL391239	71325343	3			AL158079	71325343		14910	4480	2046	21436
S/G/Y/R/B/O	NT_004464	AL645767	71397711	3	chr1	NT_004464	AL513349	71429429	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004464	AL645767	71397711	3			AC023656	71397711		31657	0	2966	34623
S/G/Y/R/B/O	NT_004464	AL513349	71429429	3	chr1	NT_004464	AL365362	71577016	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004464	AL513349	71429429	3			AC023656	71429429		132315	0	3126	135441
S/G/Y/R/B/O	NT_004464	AL365362	71577016	3	chr1	NT_004464	AL645724	71667356	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004464	AL365362	71577016	3			AC021592	71397711		55874	3562	4131	63567
S/G/Y/R/B/O	NT_004464	AL645724	71667356	3	chr1	NT_004464	AL512292	71676377	3	0	1990	0	1990
S/G/Y/R/B/O	NT_004464	AL645724	71667356	3			AC021592	71667356		11106	0	0	11106
S/G/Y/R/B/O	NT_004464	AL512292	71676377	3	chr1	NT_004464	AL365254	71809774	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004464	AL512292	71676377	3			AC016509	71676377		17808	0	0	17808
S/G/Y/R/B/O	NT_004464	AL512292	71676377	3			AC021592	71676377		48544	2455	4753	55752
S/G/Y/R/B/O	NT_004464	AL365254	71809774	3	chr1	NT_004464	AL513166	71965483	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004464	AL365254	71809774	3			AC016509	71667356		142375	2225	0	144600
S/G/Y/R/B/O	NT_004464	AL513166	71965483	3	chr1	NT_004464	AL139149	72134300	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004464	AL139149	72134300	3	chr1	NT_004464	AL583808	72154258	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL583808	72154258	3	chr1	NT_004464	AL732618	72326900	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004464	AL583808	72154258	3			AC073380	71965483		97285	3405	4314	105004
S/G/Y/R/B/O	NT_004464	AL732618	72326900	3	chr1	NT_004464	AL606535	72420233	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004464	AL606535	72420233	3	chr1	NT_004464	AL606463	72538047	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004464	AL606463	72538047	3	chr1	NT_004464	AL391297	72695351	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004464	AL391297	72695351	3	chr1	NT_004464	AC105273	72806391	3	30074	0	0	30074
S/G/Y/R/B/O	NT_004464	AL391297	72695351	3			AL133285	72806391		66950	0	3633	70583
S/G/Y/R/B/O	NT_004464	AC105273	72806391	3	chr1	NT_004464	AL590092	72914694	3	0	0	1754	1754
S/G/Y/R/B/O	NT_004464	AC105273	72806391	3			AC026490	72538047		51704	4861	8615	65180
S/G/Y/R/B/O	NT_004464	AC105273	72806391	3			AL133285	72538047		26142	0	3633	29775
S/G/Y/R/B/O	NT_004464	AL590092	72914694	3	chr1	NT_004464	AC091615	73022134	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL590092	72914694	3			AC026490	72914694		41974	2789	1305	46068
S/G/Y/R/B/O	NT_004464	AC091615	73022134	3	chr1	NT_004464	AC105269	73034566	3	0	0	47862	47862
S/G/Y/R/B/O	NT_004464	AC091615	73022134	3			AC026490	72806391		24898	2768	0	27666
S/G/Y/R/B/O	NT_004464	AC105269	73034566	3	chr1	NT_004464	AL591463	73107127	3	69865	0	0	69865
S/G/Y/R/B/O	NT_004464	AL591463	73107127	3	chr1	NT_004464	AL359200	73223798	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004464	AL359200	73223798	3	chr1	NT_004464	AC090530	73285737	3	2059	0	0	2059
S/G/Y/R/B/O	NT_004464	AC090530	73285737	3	chr1	NT_004464	AL359205	73484256	3	96317	0	0	96317
S/G/Y/R/B/O	NT_004464	AC090530	73285737	3			AC023198	73107127		64456	0	1639	66095
S/G/Y/R/B/O	NT_004464	AC090530	73285737	3			AL357852	73107127		24836	2126	6436	33398
S/G/Y/R/B/O	NT_004464	AL359205	73484256	3	chr1	NT_004464	AC098692	73557364	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AL359205	73484256	3			AC023198	73484256		120583	0	19486	140069
S/G/Y/R/B/O	NT_004464	AC098692	73557364	3	chr1	NT_004464	AC119672	73631366	3	6079	0	0	6079
S/G/Y/R/B/O	NT_004464	AC098692	73557364	3			AC018404	73285737		42343	0	0	42343
S/G/Y/R/B/O	NT_004464	AC119672	73631366	3	chr1	NT_004464	AC093158	73653478	3	0	0	9808	9808
S/G/Y/R/B/O	NT_004464	AC119672	73631366	3			AC018404	73631366		28150	0	0	28150
S/G/Y/R/B/O	NT_004464	AC093158	73653478	3	chr1	NT_004464	AC105271	73822983	3	40476	0	0	40476
S/G/Y/R/B/O	NT_004464	AC093158	73653478	3	chr1	NT_004464	AC058795	73894802	1	17507	0	0	17507
S/G/Y/R/B/O	NT_004464	AC093158	73653478	3	chr1	NT_004464	AC105274	73894905	1	38086	0	0	38086
S/G/Y/R/B/O	NT_004464	AC093158	73653478	3			AC073887	73894802		32980	16910	14862	64752
S/G/Y/R/B/O	NT_004464	AC105271	73822983	3	chr1	NT_004464	AC058795	73894802	1	55652	1834	6517	64003
S/G/Y/R/B/O	NT_004464	AC105271	73822983	3	chr1	NT_004464	AC105274	73894905	1	25398	0	0	25398
S/G/Y/R/B/O	NT_004464	AC105271	73822983	3			AC073887	73894802		35677	3528	14575	53780
S/G/Y/R/B/O	NT_004464	AC058795	73894802	1	chr1	NT_004464	AC105274	73894905	1	6323	0	0	6323
S/G/Y/R/B/O	NT_004464	AC058795	73894802	1	chr1	NT_004464	AC093158	73653478	3	17507	0	0	17507
S/G/Y/R/B/O	NT_004464	AC058795	73894802	1	chr1	NT_004464	AC096950	74021961	3	30085	0	0	30085
S/G/Y/R/B/O	NT_004464	AC058795	73894802	1			AC015897	73894905		63068	4268	2742	70078
S/G/Y/R/B/O	NT_004464	AC058795	73894802	1			AC019284	73894905		62953	2477	4664	70094
S/G/Y/R/B/O	NT_004464	AC058795	73894802	1			AC073887	73894905		37673	3761	10200	51634
S/G/Y/R/B/O	NT_004464	AC105274	73894905	1	chr1	NT_004464	AC096950	74021961	3	0	0	0	0
S/G/Y/R/B/O	NT_004464	AC105274	73894905	1	chr1	NT_004464	AC093158	73653478	3	38086	0	0	38086
S/G/Y/R/B/O	NT_004464	AC105274	73894905	1	chr1	NT_004686	AC099334	91268321	3	28963	7156	7160	43279
S/G/Y/R/B/O	NT_004464	AC105274	73894905	1	chr1	NT_004464	AC105271	73822983	3	25398	0	0	25398
S/G/Y/R/B/O	NT_004464	AC096950	74021961	3	chr1	NT_004464	AC135803	74139825	1	0	1356	0	1356
S/G/Y/R/B/O	NT_004464	AC096950	74021961	3	chr1	NT_004464	AC058795	73894802	1	30085	0	0	30085
S/G/Y/R/B/O	NT_004464	AC096950	74021961	3			AC009418	91378887		49703	0	18908	68611
S/G/Y/R/B/O	NT_004464	AC096950	74021961	3			AC015897	91378887		118309	0	0	118309
S/G/Y/R/B/O	NT_004464	AC096950	74021961	3			AC019284	91378887		117536	0	0	117536
S/G/Y/R/B/O	NT_004464	AC135803	74139825	1	chr1	NT_004464	AL359969	74158428	3	32383	0	14913	47296
S/G/Y/R/B/O	NT_004464	AC135803	74139825	1			AC009418	74139825		54135	0	6913	61048
S/G/Y/R/B/O	NT_004464	AC135803	74139825	1			AC091611	74139825		27772	0	14911	42683
S/G/Y/R/B/O	NT_004464	AC135803	74139825	1			AC091611	74139825		27772	0	14911	42683
S/G/Y/R/B/O	NT_004464	AL359969	74158428	3
S/G/Y/R/B/O	NT_004464	AL359969	74158428	3			AC009418	74158428		56916	0	0	56916
S/G/Y/R/B/O	NT_004464	AL359969	74158428	3			AC091611	74158428		142771	0	0	142771
S/G/Y/R/B/O	NT_004464	AL359969	74158428	3			AC091611	74158428		142771	0	0	142771
S/G/Y/R/B/O	NT_004464	AL359969	74158428	3			AL390740	74139825		83936	0	5147	89083