Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_029862

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029862	AL139418	192337078	3	chr1	NT_029862	AL353809	192420244	3	0	0	0	0
S/G/Y/R/B/O	NT_029862	AL353809	192420244	3	chr1	NT_029862	AL627208	192574136	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AL627208	192574136	3	chr1	NT_029862	AL356315	192604429	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AL356315	192604429	3	chr1	NT_029862	AL513325	192636989	3	0	0	0	0
S/G/Y/R/B/O	NT_029862	AL513325	192636989	3	chr1	NT_029862	AL136322	192847877	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029862	AL513325	192636989	3			AL356381	192847877		49816	2747	72151	124714
S/G/Y/R/B/O	NT_029862	AL136322	192847877	3	chr1	NT_029862	AL139136	192901831	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AL136322	192847877	3			AC008110	192847877		18685	0	0	18685
S/G/Y/R/B/O	NT_029862	AL139136	192901831	3	chr1	NT_029862	AL365258	193081427	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029862	AL139136	192901831	3			AC008110	192636989		139957	5098	1823	146878
S/G/Y/R/B/O	NT_029862	AL139136	192901831	3			AL138777	192847877		50209	2120	0	52329
S/G/Y/R/B/O	NT_029862	AL365258	193081427	3	chr1	NT_029862	AL590115	193208770	3	0	0	1602	1602
S/G/Y/R/B/O	NT_029862	AL365258	193081427	3			AL138777	193081427		129146	0	0	129146
S/G/Y/R/B/O	NT_029862	AL590115	193208770	3	chr1	NT_029862	AL136136	193389297	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029862	AL136136	193389297	3	chr1	NT_029862	AC093561	193533455	3	43400	0	0	43400
S/G/Y/R/B/O	NT_029862	AC093561	193533455	3	chr1	NT_029862	AC093419	193674339	3	39895	0	0	39895
S/G/Y/R/B/O	NT_029862	AC093419	193674339	3	chr1	NT_029862	AL450352	193797653	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029862	AL450352	193797653	3	chr1	NT_029862	AL157402	193944407	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029862	AL157402	193944407	3	chr1	NT_029862	AC117946	194152745	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029862	AC117946	194152745	3	chr1	NT_029862	AL136321	194203619	3	3478	0	0	3478
S/G/Y/R/B/O	NT_029862	AL136321	194203619	3	chr1	NT_029862	AC096631	194370771	3	28135	0	0	28135
S/G/Y/R/B/O	NT_029862	AC096631	194370771	3	chr1	NT_029862	AC105941	194474794	3	0	0	0	0
S/G/Y/R/B/O	NT_029862	AC096631	194370771	3			AC011778	194152745		60519	0	21762	82281
S/G/Y/R/B/O	NT_029862	AC096631	194370771	3			AC026240	194152745		40443	2460	15555	58458
S/G/Y/R/B/O	NT_029862	AC105941	194474794	3	chr1	NT_029862	AC099673	194652537	3	40456	0	0	40456
S/G/Y/R/B/O	NT_029862	AC105941	194474794	3			AC011778	194203619		82441	0	3396	85837
S/G/Y/R/B/O	NT_029862	AC105941	194474794	3			AC022989	194203619		54568	0	63375	117943
S/G/Y/R/B/O	NT_029862	AC105941	194474794	3			AC026240	194203619		72454	0	0	72454
S/G/Y/R/B/O	NT_029862	AC099673	194652537	3	chr1	NT_029862	AC099335	194805830	3	48529	0	0	48529
S/G/Y/R/B/O	NT_029862	AC099673	194652537	3			AC012200	194652537		21370	0	0	21370
S/G/Y/R/B/O	NT_029862	AC099673	194652537	3			AC022989	194652537		12580	0	13413	25993
S/G/Y/R/B/O	NT_029862	AC099335	194805830	3	chr1	NT_029862	AC092018	194914916	3	0	0	0	0
S/G/Y/R/B/O	NT_029862	AC092018	194914916	3	chr1	NT_029862	AL450244	195022423	3	0	0	0	0
S/G/Y/R/B/O	NT_029862	AC092018	194914916	3			AC090800	194652537		36757	0	0	36757
S/G/Y/R/B/O	NT_029862	AC092018	194914916	3			AC090800	194652537		36757	0	0	36757
S/G/Y/R/B/O	NT_029862	AL450244	195022423	3	chr1	NT_029862	AL590674	195105524	3	0	2000	0	2000
S/G/Y/R/B/O	NT_029862	AL450244	195022423	3			AC090800	194652537		84701	0	0	84701
S/G/Y/R/B/O	NT_029862	AL450244	195022423	3			AC090800	194652537		84701	0	0	84701
S/G/Y/R/B/O	NT_029862	AL590674	195105524	3	chr1	NT_029862	AL596266	195217580	3	113169	0	0	113169
S/G/Y/R/B/O	NT_029862	AL590674	195105524	3			AC010801	195217580		82868	0	21955	104823
S/G/Y/R/B/O	NT_029862	AL590674	195105524	3			AC090800	195217580		62346	0	0	62346
S/G/Y/R/B/O	NT_029862	AL590674	195105524	3			AC090800	195217580		62346	0	0	62346
S/G/Y/R/B/O	NT_029862	AL596266	195217580	3	chr1	NT_029862	AL445687	195232723	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AL596266	195217580	3			AC010801	195217580		96986	2562	19498	119046
S/G/Y/R/B/O	NT_029862	AL596266	195217580	3			AC090800	195217580		61716	0	0	61716
S/G/Y/R/B/O	NT_029862	AL596266	195217580	3			AC090800	195217580		61716	0	0	61716
S/G/Y/R/B/O	NT_029862	AL445687	195232723	3	chr1	NT_029862	AL591670	195398831	3	0	2000	0	2000
S/G/Y/R/B/O	NT_029862	AL445687	195232723	3			AC009633	195105524		138705	7399	4790	150894
S/G/Y/R/B/O	NT_029862	AL445687	195232723	3			AC010801	195105524		13704	0	1162	14866
S/G/Y/R/B/O	NT_029862	AL591670	195398831	3	chr1	NT_029862	AC096633	195436997	3	0	0	0	0
S/G/Y/R/B/O	NT_029862	AL591670	195398831	3			AL513362	195232723		17851	0	0	17851
S/G/Y/R/B/O	NT_029862	AC096633	195436997	3	chr1	NT_029862	AL590126	195613150	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AC096633	195436997	3			AF190464	195232723		158115	0	0	158115
S/G/Y/R/B/O	NT_029862	AC096633	195436997	3			AL513362	195232723		52382	7206	78038	137626
S/G/Y/R/B/O	NT_029862	AL590126	195613150	3	chr1	NT_029862	AC097065	195655330	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AL590126	195613150	3			AF190464	195655330		44154	0	0	44154
S/G/Y/R/B/O	NT_029862	AC097065	195655330	3	chr1	NT_029862	AC104461	195830191	3	89204	0	0	89204
S/G/Y/R/B/O	NT_029862	AC097065	195655330	3			AF190464	195830191		10666	0	0	10666
S/G/Y/R/B/O	NT_029862	AC104461	195830191	3	chr1	NT_029862	AL359834	195906240	3	2001	0	0	2001
S/G/Y/R/B/O	NT_029862	AL359834	195906240	3	chr1	NT_029862	AL445483	195974487	3	0	1991	0	1991
S/G/Y/R/B/O	NT_029862	AL445483	195974487	3	chr1	NT_029862	AL450104	196136487	3	0	0	100	100
S/G/Y/R/B/O	NT_029862	AL445483	195974487	3			AL445653	195906240		120926	0	0	120926
S/G/Y/R/B/O	NT_029862	AL450104	196136487	3	chr1	NT_029862	AC099756	196291266	3	45836	0	0	45836
S/G/Y/R/B/O	NT_029862	AL450104	196136487	3			AC025349	196136487		98837	5453	13138	117428
S/G/Y/R/B/O	NT_029862	AL450104	196136487	3			AC027113	196136487		24663	2518	13000	40181
S/G/Y/R/B/O	NT_029862	AL450104	196136487	3			AL445653	195974487		39217	0	0	39217
S/G/Y/R/B/O	NT_029862	AC099756	196291266	3	chr1	NT_029862	AL358473	196412732	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029862	AC099756	196291266	3			AC025349	195974487		49203	0	0	49203
S/G/Y/R/B/O	NT_029862	AC099756	196291266	3			AC027113	195974487		73003	7374	59309	139686
S/G/Y/R/B/O	NT_029862	AL358473	196412732	3	chr1	NT_029862	AL139159	196488766	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AL139159	196488766	3	chr1	NT_029862	AC103925	196618897	3	18975	0	0	18975
S/G/Y/R/B/O	NT_029862	AL139159	196488766	3			AC073202	196488766		19770	0	15933	35703
S/G/Y/R/B/O	NT_029862	AC103925	196618897	3	chr1	NT_029862	AC119427	196775135	1	82222	0	0	82222
S/G/Y/R/B/O	NT_029862	AC103925	196618897	3			AC073202	196412732		62672	2413	37449	102534
S/G/Y/R/B/O	NT_029862	AC119427	196775135	1	chr1	NT_029862	AC096677	196808002	3	0	925	25501	26426
S/G/Y/R/B/O	NT_029862	AC119427	196775135	1			AC073202	196488766		43646	2900	10135	56681
S/G/Y/R/B/O	NT_029862	AC119427	196775135	1			AC083954	196488766		47026	1579	3359	51964
S/G/Y/R/B/O	NT_029862	AC096677	196808002	3	chr1	NT_029862	AL512788	197031737	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029862	AC096677	196808002	3			AC083954	196618897		118327	0	3103	121430
S/G/Y/R/B/O	NT_029862	AC096677	196808002	3			AL355503	196775135		72896	10285	12631	95812
S/G/Y/R/B/O	NT_029862	AL512788	197031737	3