Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004836

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004836	AL732292	230710116	3	chr1	NT_004836	AL133418	230761131	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL133418	230761131	3	chr1	NT_004836	AL391994	230836716	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL133418	230761131	3			AL356781	230445578		70578	0	0	70578
S/G/Y/R/B/O	NT_004836	AL391994	230836716	3	chr1	NT_004836	AL357556	230976989	3	0	0	1877	1877
S/G/Y/R/B/O	NT_004836	AL391994	230836716	3			AL356781	230761131		46610	0	19264	65874
S/G/Y/R/B/O	NT_004836	AL357556	230976989	3	chr1	NT_004836	AL672237	231026396	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL672237	231026396	3	chr1	NT_004836	AL135928	231066776	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004836	AL135928	231066776	3	chr1	NT_004836	AL672238	231147715	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004836	AL135928	231066776	3			AL162611	230976989		46276	1899	4741	52916
S/G/Y/R/B/O	NT_004836	AL672238	231147715	3	chr1	NT_004836	AL583844	231185388	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004836	AL672238	231147715	3			AL162611	231066776		27552	0	1629	29181
S/G/Y/R/B/O	NT_004836	AL583844	231185388	3	chr1	NT_004836	AL390765	231260627	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL390765	231260627	3	chr1	NT_004836	AL121997	231338728	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL390765	231260627	3			AC009334	231147715		77640	0	0	77640
S/G/Y/R/B/O	NT_004836	AL121997	231338728	3	chr1	NT_004836	AL133286	231451254	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL133286	231451254	3	chr1	NT_004836	AL139161	231544508	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL139161	231544508	3	chr1	NT_004836	AL122018	231646116	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004836	AL122018	231646116	3	chr1	NT_004836	AL139162	231772927	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL139162	231772927	3	chr1	NT_004836	AL450309	231845246	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004836	AL450309	231845246	3	chr1	NT_004836	AL354693	232009893	3	0	0	1710	1710
S/G/Y/R/B/O	NT_004836	AL450309	231845246	3			AC016438	231845246		14872	0	9308	24180
S/G/Y/R/B/O	NT_004836	AL450309	231845246	3			AC073638	231845246		82503	4269	15742	102514
S/G/Y/R/B/O	NT_004836	AL354693	232009893	3	chr1	NT_004836	AL136105	232086879	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004836	AL354693	232009893	3			AC016438	232009893		22071	1927	13201	37199
S/G/Y/R/B/O	NT_004836	AL136105	232086879	3	chr1	NT_004836	AL359921	232181095	3	41389	0	0	41389
S/G/Y/R/B/O	NT_004836	AL136105	232086879	3			AL135843	231845246		24910	0	0	24910
S/G/Y/R/B/O	NT_004836	AL136105	232086879	3			AL390764	232181095		81864	0	14395	96259
S/G/Y/R/B/O	NT_004836	AL359921	232181095	3	chr1	NT_004836	AL359185	232353421	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004836	AL359921	232181095	3			AC010807	232181095		146407	2531	5137	154075
S/G/Y/R/B/O	NT_004836	AL359921	232181095	3			AL135843	232181095		73565	2854	14628	91047
S/G/Y/R/B/O	NT_004836	AL359921	232181095	3			AL357554	232086879		41201	0	16782	57983
S/G/Y/R/B/O	NT_004836	AL359921	232181095	3			AL390764	232353421		65490	0	0	65490
S/G/Y/R/B/O	NT_004836	AL359185	232353421	3	chr1	NT_004836	AL359259	232460262	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL359185	232353421	3			AL357554	232353421		50189	0	29622	79811
S/G/Y/R/B/O	NT_004836	AL359259	232460262	3	chr1	NT_004836	AL596133	232631015	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL359259	232460262	3			AC074231	232181095		76333	0	31347	107680
S/G/Y/R/B/O	NT_004836	AL359259	232460262	3			AC079975	232181095		83700	19042	8803	111545
S/G/Y/R/B/O	NT_004836	AL359259	232460262	3			AC080149	232181095		84702	3015	579	88296
S/G/Y/R/B/O	NT_004836	AL359259	232460262	3			AL357554	232181095		10529	3823	0	14352
S/G/Y/R/B/O	NT_004836	AL596133	232631015	3	chr1	NT_004836	AL391809	232658866	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004836	AL391809	232658866	3	chr1	NT_004836	AL356773	232824414	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL391809	232658866	3			AC007990	232658866		19973	2673	0	22646
S/G/Y/R/B/O	NT_004836	AL391809	232658866	3			AL356582	232658866		30630	0	50048	80678
S/G/Y/R/B/O	NT_004836	AL356773	232824414	3	chr1	NT_004836	AL445473	232931039	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004836	AL356773	232824414	3			AC007990	232631015		71711	4218	14224	90153
S/G/Y/R/B/O	NT_004836	AL356773	232824414	3			AL356582	232631015		44832	0	0	44832
S/G/Y/R/B/O	NT_004836	AL445473	232931039	3	chr1	NT_004836	AL442065	233112586	3	0	1994	0	1994
S/G/Y/R/B/O	NT_004836	AL445473	232931039	3			AC007990	232931039		35997	1342	0	37339
S/G/Y/R/B/O	NT_004836	AL445473	232931039	3			AC022248	232931039		56412	0	0	56412
S/G/Y/R/B/O	NT_004836	AL442065	233112586	3	chr1	NT_004836	AL365332	233215148	3	0	0	1583	1583
S/G/Y/R/B/O	NT_004836	AL442065	233112586	3			AC022248	233112586		56314	2211	38149	96674
S/G/Y/R/B/O	NT_004836	AL365332	233215148	3	chr1	NT_004836	AL513130	233379455	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004836	AL365332	233215148	3			AC069110	232931039		144575	2249	0	146824
S/G/Y/R/B/O	NT_004836	AL365332	233215148	3			AL354663	232931039		67710	0	1744	69454
S/G/Y/R/B/O	NT_004836	AL513130	233379455	3	chr1	NT_004836	AL359924	233397254	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL513130	233379455	3			AC069110	233379455		18072	652	0	18724
S/G/Y/R/B/O	NT_004836	AL513130	233379455	3			AL358212	233379455		11171	0	4632	15803
S/G/Y/R/B/O	NT_004836	AL359924	233397254	3	chr1	NT_004836	AL590396	233517054	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004836	AL359924	233397254	3			AC024498	233215148		10076	2349	107	12532
S/G/Y/R/B/O	NT_004836	AL359924	233397254	3			AL358212	233215148		41384	0	16197	57581
S/G/Y/R/B/O	NT_004836	AL590396	233517054	3	chr1	NT_004836	AL359203	233637162	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004836	AL590396	233517054	3			AC024498	233517054		95222	6581	14040	115843
S/G/Y/R/B/O	NT_004836	AL590396	233517054	3			AL358212	233517054		39146	0	1215	40361
S/G/Y/R/B/O	NT_004836	AL359203	233637162	3	chr1	NT_004836	AL357501	233756524	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004836	AL359203	233637162	3			AC024498	233397254		11907	0	0	11907
S/G/Y/R/B/O	NT_004836	AL357501	233756524	3	chr1	NT_004836	AL596178	233801046	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL596178	233801046	3	chr1	NT_004836	AL356010	233878969	3	0	0	1608	1608
S/G/Y/R/B/O	NT_004836	AL596178	233801046	3			AC022753	233637162		32363	0	0	32363
S/G/Y/R/B/O	NT_004836	AL356010	233878969	3	chr1	NT_004836	AL360010	234028151	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL356010	233878969	3			AC022753	233878969		32143	0	34688	66831
S/G/Y/R/B/O	NT_004836	AL356010	233878969	3			AC024487	233878969		106526	17621	9920	134067
S/G/Y/R/B/O	NT_004836	AL360010	234028151	3	chr1	NT_004836	AL359551	234051452	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL359551	234051452	3	chr1	NT_004836	AL513209	234148838	3	0	1994	0	1994
S/G/Y/R/B/O	NT_004836	AL359551	234051452	3			AL158845	233878969		24823	0	0	24823
S/G/Y/R/B/O	NT_004836	AL513209	234148838	3	chr1	NT_004836	AL583825	234289007	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004836	AL513209	234148838	3			AL158845	234148838		41600	0	0	41600
S/G/Y/R/B/O	NT_004836	AL513209	234148838	3			AL158845	234148838		41600	0	0	41600
S/G/Y/R/B/O	NT_004836	AL583825	234289007	3	chr1	NT_004836	AL596107	234485801	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004836	AL583825	234289007	3			AC069591	234289007		55927	18523	1276	75726
S/G/Y/R/B/O	NT_004836	AL596107	234485801	3	chr1	NT_004836	AL671985	234515777	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004836	AL596107	234485801	3			AC069591	234485801		25294	0	0	25294
S/G/Y/R/B/O	NT_004836	AL671985	234515777	3	chr1	NT_004836	AL606503	234521670	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL606503	234521670	3	chr1	NT_004836	AL590135	234662774	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL606503	234521670	3			AC068750	234485801		40177	5411	7021	52609
S/G/Y/R/B/O	NT_004836	AL590135	234662774	3	chr1	NT_004836	AC093426	234738201	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL590135	234662774	3			AC068750	234662774		13080	0	394	13474
S/G/Y/R/B/O	NT_004836	AC093426	234738201	3	chr1	NT_004836	AL513189	234905301	3	0	1994	0	1994
S/G/Y/R/B/O	NT_004836	AL513189	234905301	3	chr1	NT_004836	AL627388	234962823	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL627388	234962823	3	chr1	NT_004836	AC099564	234980237	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AC099564	234980237	3	chr1	NT_004836	AL357499	235167746	3	56981	0	0	56981
S/G/Y/R/B/O	NT_004836	AC099564	234980237	3			AC015901	234905301		25151	0	0	25151
S/G/Y/R/B/O	NT_004836	AL357499	235167746	3	chr1	NT_004836	AL513543	235261327	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL357499	235167746	3			AC015901	234962823		117350	0	283	117633
S/G/Y/R/B/O	NT_004836	AL513543	235261327	3	chr1	NT_004836	AC104460	235350234	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004836	AL513543	235261327	3			AC011141	234980237		37387	0	0	37387
S/G/Y/R/B/O	NT_004836	AL513543	235261327	3			AC015901	234980237		60865	0	0	60865
S/G/Y/R/B/O	NT_004836	AC104460	235350234	3	chr1	NT_004836	AL356361	235510669	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AC104460	235350234	3			AC011141	235350234		120642	9635	0	130277
S/G/Y/R/B/O	NT_004836	AC104460	235350234	3			AC013517	235350234		144547	1849	5410	151806
S/G/Y/R/B/O	NT_004836	AL356361	235510669	3	chr1	NT_004836	AL359918	235636501	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL356361	235510669	3			AC021792	235261327		46844	0	16989	63833
S/G/Y/R/B/O	NT_004836	AL359918	235636501	3	chr1	NT_004836	AL513342	235842884	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL359918	235636501	3			AC020726	235350234		49091	0	23324	72415
S/G/Y/R/B/O	NT_004836	AL359918	235636501	3			AC021792	235350234		41647	6892	25066	73605
S/G/Y/R/B/O	NT_004836	AL513342	235842884	3	chr1	NT_004836	AL590490	235969992	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL513342	235842884	3			AC020726	235350234		67564	0	7032	74596
S/G/Y/R/B/O	NT_004836	AL590490	235969992	3	chr1	NT_004836	AL646016	236019762	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL590490	235969992	3			AL356105	235969992		44635	2857	0	47492
S/G/Y/R/B/O	NT_004836	AL646016	236019762	3	chr1	NT_004836	AL358176	236094575	3	0	0	1534	1534
S/G/Y/R/B/O	NT_004836	AL646016	236019762	3			AL356105	236019762		71612	0	3339	74951
S/G/Y/R/B/O	NT_004836	AL358176	236094575	3	chr1	NT_004836	AL590965	236276886	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL358176	236094575	3			AL356105	235969992		32640	0	0	32640
S/G/Y/R/B/O	NT_004836	AL358176	236094575	3			AL596206	236276886		85927	0	0	85927
S/G/Y/R/B/O	NT_004836	AL590965	236276886	3	chr1	NT_004836	AL365184	236346268	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL590965	236276886	3			AL596206	236346268		69762	0	0	69762
S/G/Y/R/B/O	NT_004836	AL365184	236346268	3	chr1	NT_004836	AL596082	236517902	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL365184	236346268	3			AC021359	236346268		31004	4485	6058	41547
S/G/Y/R/B/O	NT_004836	AL365184	236346268	3			AL596206	236276886		28498	0	0	28498
S/G/Y/R/B/O	NT_004836	AL596082	236517902	3	chr1	NT_004836	AL590682	236535821	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL590682	236535821	3	chr1	NT_004836	AL512307	236688977	3	0	1994	0	1994
S/G/Y/R/B/O	NT_004836	AL590682	236535821	3			AC021359	236276886		46298	0	3956	50254
S/G/Y/R/B/O	NT_004836	AL590682	236535821	3			AC022067	236276886		36878	0	11797	48675
S/G/Y/R/B/O	NT_004836	AL590682	236535821	3			AC068178	236276886		62141	0	0	62141
S/G/Y/R/B/O	NT_004836	AL590682	236535821	3			AL590437	236688977		39231	0	0	39231
S/G/Y/R/B/O	NT_004836	AL512307	236688977	3	chr1	NT_004836	AL592076	236869304	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004836	AL512307	236688977	3			AC068178	236688977		17998	0	15921	33919
S/G/Y/R/B/O	NT_004836	AL512307	236688977	3			AC069187	236688977		50300	0	5979	56279
S/G/Y/R/B/O	NT_004836	AL512307	236688977	3			AL590437	236688977		62153	0	49937	112090
S/G/Y/R/B/O	NT_004836	AL592076	236869304	3	chr1	NT_004836	AL359764	236967896	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004836	AL592076	236869304	3			AC069187	236869304		83055	0	3139	86194
S/G/Y/R/B/O	NT_004836	AL359764	236967896	3	chr1	NT_004836	AL606476	237122603	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004836	AL606476	237122603	3	chr1	NT_004836	AL591898	237124597	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004836	AL591898	237124597	3	chr1	NT_004836	AL133390	237192608	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL133390	237192608	3	chr1	NT_004836	AL591897	237264380	3	0	0	0	0
S/G/Y/R/B/O	NT_004836	AL591897	237264380	3