Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_029223

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029223	AL591592	55687829	3	chr1	NT_029223	AC119674	55740349	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029223	AL591592	55687829	3			AL359432	55740349		15652	4782	9181	29615
S/G/Y/R/B/O	NT_029223	AC119674	55740349	3	chr1	NT_029223	AC099562	55796521	3	69982	0	0	69982
S/G/Y/R/B/O	NT_029223	AC099562	55796521	3	chr1	NT_029223	AC099789	55965288	3	33244	0	0	33244
S/G/Y/R/B/O	NT_029223	AC099562	55796521	3			AL390015	55740349		15149	12295	2823	30267
S/G/Y/R/B/O	NT_029223	AC099789	55965288	3	chr1	NT_029223	AL035705	56106205	3	70950	0	0	70950
S/G/Y/R/B/O	NT_029223	AL035705	56106205	3	chr1	NT_029223	AL360295	56164706	3	0	0	0	0
S/G/Y/R/B/O	NT_029223	AL360295	56164706	3	chr1	NT_029223	AL121998	56215779	3	0	0	100	100
S/G/Y/R/B/O	NT_029223	AL121998	56215779	3	chr1	NT_029223	AL161740	56346867	3	0	0	100	100
S/G/Y/R/B/O	NT_029223	AL121998	56215779	3			AL365177	56164706		68776	8170	19851	96797
S/G/Y/R/B/O	NT_029223	AL161740	56346867	3	chr1	NT_029223	AL354883	56405623	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL161740	56346867	3			AL365177	56405623		40945	8052	0	48997
S/G/Y/R/B/O	NT_029223	AL354883	56405623	3	chr1	NT_029223	AL080278	56539634	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL354883	56405623	3			AL138779	56539634		63883	5801	22134	91818
S/G/Y/R/B/O	NT_029223	AL354883	56405623	3			AL157907	56539634		69704	0	4900	74604
S/G/Y/R/B/O	NT_029223	AL080278	56539634	3	chr1	NT_029223	AL139219	56642147	3	0	0	0	0
S/G/Y/R/B/O	NT_029223	AL080278	56539634	3			AC009278	56346867		11976	0	0	11976
S/G/Y/R/B/O	NT_029223	AL080278	56539634	3			AC027234	56346867		52392	6115	31457	89964
S/G/Y/R/B/O	NT_029223	AL080278	56539634	3			AL157907	56346867		41389	2612	13075	57076
S/G/Y/R/B/O	NT_029223	AL139219	56642147	3	chr1	NT_029223	AL390243	56706902	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029223	AL139219	56642147	3			AC009278	56405623		61366	0	2402	63768
S/G/Y/R/B/O	NT_029223	AL139219	56642147	3			AC027234	56405623		55063	2116	2468	59647
S/G/Y/R/B/O	NT_029223	AL390243	56706902	3	chr1	NT_029223	AL355004	56789497	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029223	AL390243	56706902	3			AC009278	56706902		84437	0	0	84437
S/G/Y/R/B/O	NT_029223	AL390243	56706902	3			AC027234	56706902		18344	919	7120	26383
S/G/Y/R/B/O	NT_029223	AL355004	56789497	3	chr1	NT_029223	AL442223	56804106	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL355004	56789497	3			AC009278	56789497		14569	0	0	14569
S/G/Y/R/B/O	NT_029223	AL442223	56804106	3	chr1	NT_029223	AL359739	56856789	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029223	AL359739	56856789	3	chr1	NT_029223	AL663085	57025073	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL663085	57025073	3	chr1	NT_029223	AL627090	57054214	3	0	1998	0	1998
S/G/Y/R/B/O	NT_029223	AL627090	57054214	3	chr1	NT_029223	AL137855	57089651	3	0	0	0	0
S/G/Y/R/B/O	NT_029223	AL137855	57089651	3	chr1	NT_029223	AL109944	57194621	3	0	0	100	100
S/G/Y/R/B/O	NT_029223	AL109944	57194621	3	chr1	NT_029223	AL391826	57334894	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029223	AL109944	57194621	3			AL390761	57089651		70012	0	5018	75030
S/G/Y/R/B/O	NT_029223	AL391826	57334894	3	chr1	NT_029223	AL445193	57401118	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL391826	57334894	3			AL139221	57194621		14910	9096	18184	42190
S/G/Y/R/B/O	NT_029223	AL391826	57334894	3			AL390761	57194621		59417	0	0	59417
S/G/Y/R/B/O	NT_029223	AL445193	57401118	3	chr1	NT_029223	AL365367	57467820	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL445193	57401118	3			AL139221	57401118		53832	0	2229	56061
S/G/Y/R/B/O	NT_029223	AL365367	57467820	3	chr1	NT_029223	AL357373	57556494	3	0	0	0	0
S/G/Y/R/B/O	NT_029223	AL365367	57467820	3			AC015639	57334894		36163	0	13168	49331
S/G/Y/R/B/O	NT_029223	AL357373	57556494	3	chr1	NT_029223	AC104464	57641834	3	0	1997	0	1997
S/G/Y/R/B/O	NT_029223	AL357373	57556494	3			AC015639	57401118		66925	0	13192	80117
S/G/Y/R/B/O	NT_029223	AC104464	57641834	3	chr1	NT_029223	AL109845	57793606	3	34119	0	0	34119
S/G/Y/R/B/O	NT_029223	AC104464	57641834	3			AC015639	57641834		18265	0	0	18265
S/G/Y/R/B/O	NT_029223	AC104464	57641834	3			AL359879	57556494		70054	2533	8706	81293
S/G/Y/R/B/O	NT_029223	AL109845	57793606	3	chr1	NT_029223	AL365187	57884837	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL109845	57793606	3			AC027052	57556494		37141	2346	4469	43956
S/G/Y/R/B/O	NT_029223	AL109845	57793606	3			AL359879	57641834		65419	0	19451	84870
S/G/Y/R/B/O	NT_029223	AL365187	57884837	3	chr1	NT_029223	AL035411	57933367	3	0	1982	0	1982
S/G/Y/R/B/O	NT_029223	AL365187	57884837	3			AC025008	57884837		30436	1853	6555	38844
S/G/Y/R/B/O	NT_029223	AL365187	57884837	3			AC027052	57884837		19291	5784	0	25075
S/G/Y/R/B/O	NT_029223	AL035411	57933367	3	chr1	NT_029223	AL450024	58077216	3	0	1987	0	1987
S/G/Y/R/B/O	NT_029223	AL035411	57933367	3			AC025008	57793606		126864	0	564	127428
S/G/Y/R/B/O	NT_029223	AL035411	57933367	3			AC027052	57793606		57942	0	6706	64648
S/G/Y/R/B/O	NT_029223	AL450024	58077216	3	chr1	NT_029223	AL136985	58095768	3	0	0	1762	1762
S/G/Y/R/B/O	NT_029223	AL136985	58095768	3	chr1	NT_029223	AL606762	58236432	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029223	AL606762	58236432	3	chr1	NT_029223	AC105277	58257379	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AC105277	58257379	3	chr1	NT_029223	AL592431	58415120	3	0	1995	0	1995
S/G/Y/R/B/O	NT_029223	AC105277	58257379	3			AC080177	58095768		59601	22801	18412	100814
S/G/Y/R/B/O	NT_029223	AL592431	58415120	3	chr1	NT_029223	AC093425	58463778	3	2022	0	0	2022
S/G/Y/R/B/O	NT_029223	AC093425	58463778	3	chr1	NT_029223	AL596322	58641255	3	110559	0	0	110559
S/G/Y/R/B/O	NT_029223	AC093425	58463778	3			AC016336	58257379		62087	2507	22552	87146
S/G/Y/R/B/O	NT_029223	AC093425	58463778	3			AL138903	58257379		85521	0	6465	91986
S/G/Y/R/B/O	NT_029223	AL596322	58641255	3	chr1	NT_029223	AC093424	58659740	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029223	AL596322	58641255	3			AC016336	58641255		72971	2507	8352	83830
S/G/Y/R/B/O	NT_029223	AL596322	58641255	3			AC025793	58641255		14482	0	0	14482
S/G/Y/R/B/O	NT_029223	AL596322	58641255	3			AL138903	58463778		61163	0	0	61163
S/G/Y/R/B/O	NT_029223	AC093424	58659740	3	chr1	NT_029223	AC069129	58811593	1	21182	3444	4525	29151
S/G/Y/R/B/O	NT_029223	AC093424	58659740	3			AC025793	58463778		89226	0	2149	91375
S/G/Y/R/B/O	NT_029223	AC069129	58811593	1	chr1	NT_029223	AL390234	58849941	3	38084	3237	29207	70528
S/G/Y/R/B/O	NT_029223	AC069129	58811593	1			AC013610	58641255		24833	16090	31848	72771
S/G/Y/R/B/O	NT_029223	AL390234	58849941	3	chr1	NT_029223	AL713859	58976411	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029223	AL390234	58849941	3			AC013610	58849941		51623	14653	9771	76047
S/G/Y/R/B/O	NT_029223	AL713859	58976411	3