|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_029223 | AL591592 | 55687829 | 3 | chr1 | NT_029223 | AC119674 | 55740349 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_029223 | AL591592 | 55687829 | 3 |   |   | AL359432 | 55740349 | | 15652 | 4782 | 9181 | 29615 |
S/G/Y/R/B/O |
NT_029223 | AC119674 | 55740349 | 3 | chr1 | NT_029223 | AC099562 | 55796521 | 3 | 69982 | 0 | 0 | 69982 |
S/G/Y/R/B/O |
NT_029223 | AC099562 | 55796521 | 3 | chr1 | NT_029223 | AC099789 | 55965288 | 3 | 33244 | 0 | 0 | 33244 |
S/G/Y/R/B/O |
NT_029223 | AC099562 | 55796521 | 3 |   |   | AL390015 | 55740349 | | 15149 | 12295 | 2823 | 30267 |
S/G/Y/R/B/O |
NT_029223 | AC099789 | 55965288 | 3 | chr1 | NT_029223 | AL035705 | 56106205 | 3 | 70950 | 0 | 0 | 70950 |
S/G/Y/R/B/O |
NT_029223 | AL035705 | 56106205 | 3 | chr1 | NT_029223 | AL360295 | 56164706 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_029223 | AL360295 | 56164706 | 3 | chr1 | NT_029223 | AL121998 | 56215779 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_029223 | AL121998 | 56215779 | 3 | chr1 | NT_029223 | AL161740 | 56346867 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_029223 | AL121998 | 56215779 | 3 |   |   | AL365177 | 56164706 | | 68776 | 8170 | 19851 | 96797 |
S/G/Y/R/B/O |
NT_029223 | AL161740 | 56346867 | 3 | chr1 | NT_029223 | AL354883 | 56405623 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL161740 | 56346867 | 3 |   |   | AL365177 | 56405623 | | 40945 | 8052 | 0 | 48997 |
S/G/Y/R/B/O |
NT_029223 | AL354883 | 56405623 | 3 | chr1 | NT_029223 | AL080278 | 56539634 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL354883 | 56405623 | 3 |   |   | AL138779 | 56539634 | | 63883 | 5801 | 22134 | 91818 |
S/G/Y/R/B/O |
NT_029223 | AL354883 | 56405623 | 3 |   |   | AL157907 | 56539634 | | 69704 | 0 | 4900 | 74604 |
S/G/Y/R/B/O |
NT_029223 | AL080278 | 56539634 | 3 | chr1 | NT_029223 | AL139219 | 56642147 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_029223 | AL080278 | 56539634 | 3 |   |   | AC009278 | 56346867 | | 11976 | 0 | 0 | 11976 |
S/G/Y/R/B/O |
NT_029223 | AL080278 | 56539634 | 3 |   |   | AC027234 | 56346867 | | 52392 | 6115 | 31457 | 89964 |
S/G/Y/R/B/O |
NT_029223 | AL080278 | 56539634 | 3 |   |   | AL157907 | 56346867 | | 41389 | 2612 | 13075 | 57076 |
S/G/Y/R/B/O |
NT_029223 | AL139219 | 56642147 | 3 | chr1 | NT_029223 | AL390243 | 56706902 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_029223 | AL139219 | 56642147 | 3 |   |   | AC009278 | 56405623 | | 61366 | 0 | 2402 | 63768 |
S/G/Y/R/B/O |
NT_029223 | AL139219 | 56642147 | 3 |   |   | AC027234 | 56405623 | | 55063 | 2116 | 2468 | 59647 |
S/G/Y/R/B/O |
NT_029223 | AL390243 | 56706902 | 3 | chr1 | NT_029223 | AL355004 | 56789497 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_029223 | AL390243 | 56706902 | 3 |   |   | AC009278 | 56706902 | | 84437 | 0 | 0 | 84437 |
S/G/Y/R/B/O |
NT_029223 | AL390243 | 56706902 | 3 |   |   | AC027234 | 56706902 | | 18344 | 919 | 7120 | 26383 |
S/G/Y/R/B/O |
NT_029223 | AL355004 | 56789497 | 3 | chr1 | NT_029223 | AL442223 | 56804106 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL355004 | 56789497 | 3 |   |   | AC009278 | 56789497 | | 14569 | 0 | 0 | 14569 |
S/G/Y/R/B/O |
NT_029223 | AL442223 | 56804106 | 3 | chr1 | NT_029223 | AL359739 | 56856789 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_029223 | AL359739 | 56856789 | 3 | chr1 | NT_029223 | AL663085 | 57025073 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL663085 | 57025073 | 3 | chr1 | NT_029223 | AL627090 | 57054214 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_029223 | AL627090 | 57054214 | 3 | chr1 | NT_029223 | AL137855 | 57089651 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_029223 | AL137855 | 57089651 | 3 | chr1 | NT_029223 | AL109944 | 57194621 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_029223 | AL109944 | 57194621 | 3 | chr1 | NT_029223 | AL391826 | 57334894 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_029223 | AL109944 | 57194621 | 3 |   |   | AL390761 | 57089651 | | 70012 | 0 | 5018 | 75030 |
S/G/Y/R/B/O |
NT_029223 | AL391826 | 57334894 | 3 | chr1 | NT_029223 | AL445193 | 57401118 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL391826 | 57334894 | 3 |   |   | AL139221 | 57194621 | | 14910 | 9096 | 18184 | 42190 |
S/G/Y/R/B/O |
NT_029223 | AL391826 | 57334894 | 3 |   |   | AL390761 | 57194621 | | 59417 | 0 | 0 | 59417 |
S/G/Y/R/B/O |
NT_029223 | AL445193 | 57401118 | 3 | chr1 | NT_029223 | AL365367 | 57467820 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL445193 | 57401118 | 3 |   |   | AL139221 | 57401118 | | 53832 | 0 | 2229 | 56061 |
S/G/Y/R/B/O |
NT_029223 | AL365367 | 57467820 | 3 | chr1 | NT_029223 | AL357373 | 57556494 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_029223 | AL365367 | 57467820 | 3 |   |   | AC015639 | 57334894 | | 36163 | 0 | 13168 | 49331 |
S/G/Y/R/B/O |
NT_029223 | AL357373 | 57556494 | 3 | chr1 | NT_029223 | AC104464 | 57641834 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_029223 | AL357373 | 57556494 | 3 |   |   | AC015639 | 57401118 | | 66925 | 0 | 13192 | 80117 |
S/G/Y/R/B/O |
NT_029223 | AC104464 | 57641834 | 3 | chr1 | NT_029223 | AL109845 | 57793606 | 3 | 34119 | 0 | 0 | 34119 |
S/G/Y/R/B/O |
NT_029223 | AC104464 | 57641834 | 3 |   |   | AC015639 | 57641834 | | 18265 | 0 | 0 | 18265 |
S/G/Y/R/B/O |
NT_029223 | AC104464 | 57641834 | 3 |   |   | AL359879 | 57556494 | | 70054 | 2533 | 8706 | 81293 |
S/G/Y/R/B/O |
NT_029223 | AL109845 | 57793606 | 3 | chr1 | NT_029223 | AL365187 | 57884837 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL109845 | 57793606 | 3 |   |   | AC027052 | 57556494 | | 37141 | 2346 | 4469 | 43956 |
S/G/Y/R/B/O |
NT_029223 | AL109845 | 57793606 | 3 |   |   | AL359879 | 57641834 | | 65419 | 0 | 19451 | 84870 |
S/G/Y/R/B/O |
NT_029223 | AL365187 | 57884837 | 3 | chr1 | NT_029223 | AL035411 | 57933367 | 3 | 0 | 1982 | 0 | 1982 |
S/G/Y/R/B/O |
NT_029223 | AL365187 | 57884837 | 3 |   |   | AC025008 | 57884837 | | 30436 | 1853 | 6555 | 38844 |
S/G/Y/R/B/O |
NT_029223 | AL365187 | 57884837 | 3 |   |   | AC027052 | 57884837 | | 19291 | 5784 | 0 | 25075 |
S/G/Y/R/B/O |
NT_029223 | AL035411 | 57933367 | 3 | chr1 | NT_029223 | AL450024 | 58077216 | 3 | 0 | 1987 | 0 | 1987 |
S/G/Y/R/B/O |
NT_029223 | AL035411 | 57933367 | 3 |   |   | AC025008 | 57793606 | | 126864 | 0 | 564 | 127428 |
S/G/Y/R/B/O |
NT_029223 | AL035411 | 57933367 | 3 |   |   | AC027052 | 57793606 | | 57942 | 0 | 6706 | 64648 |
S/G/Y/R/B/O |
NT_029223 | AL450024 | 58077216 | 3 | chr1 | NT_029223 | AL136985 | 58095768 | 3 | 0 | 0 | 1762 | 1762 |
S/G/Y/R/B/O |
NT_029223 | AL136985 | 58095768 | 3 | chr1 | NT_029223 | AL606762 | 58236432 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_029223 | AL606762 | 58236432 | 3 | chr1 | NT_029223 | AC105277 | 58257379 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AC105277 | 58257379 | 3 | chr1 | NT_029223 | AL592431 | 58415120 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_029223 | AC105277 | 58257379 | 3 |   |   | AC080177 | 58095768 | | 59601 | 22801 | 18412 | 100814 |
S/G/Y/R/B/O |
NT_029223 | AL592431 | 58415120 | 3 | chr1 | NT_029223 | AC093425 | 58463778 | 3 | 2022 | 0 | 0 | 2022 |
S/G/Y/R/B/O |
NT_029223 | AC093425 | 58463778 | 3 | chr1 | NT_029223 | AL596322 | 58641255 | 3 | 110559 | 0 | 0 | 110559 |
S/G/Y/R/B/O |
NT_029223 | AC093425 | 58463778 | 3 |   |   | AC016336 | 58257379 | | 62087 | 2507 | 22552 | 87146 |
S/G/Y/R/B/O |
NT_029223 | AC093425 | 58463778 | 3 |   |   | AL138903 | 58257379 | | 85521 | 0 | 6465 | 91986 |
S/G/Y/R/B/O |
NT_029223 | AL596322 | 58641255 | 3 | chr1 | NT_029223 | AC093424 | 58659740 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_029223 | AL596322 | 58641255 | 3 |   |   | AC016336 | 58641255 | | 72971 | 2507 | 8352 | 83830 |
S/G/Y/R/B/O |
NT_029223 | AL596322 | 58641255 | 3 |   |   | AC025793 | 58641255 | | 14482 | 0 | 0 | 14482 |
S/G/Y/R/B/O |
NT_029223 | AL596322 | 58641255 | 3 |   |   | AL138903 | 58463778 | | 61163 | 0 | 0 | 61163 |
S/G/Y/R/B/O |
NT_029223 | AC093424 | 58659740 | 3 | chr1 | NT_029223 | AC069129 | 58811593 | 1 | 21182 | 3444 | 4525 | 29151 |
S/G/Y/R/B/O |
NT_029223 | AC093424 | 58659740 | 3 |   |   | AC025793 | 58463778 | | 89226 | 0 | 2149 | 91375 |
S/G/Y/R/B/O |
NT_029223 | AC069129 | 58811593 | 1 | chr1 | NT_029223 | AL390234 | 58849941 | 3 | 38084 | 3237 | 29207 | 70528 |
S/G/Y/R/B/O |
NT_029223 | AC069129 | 58811593 | 1 |   |   | AC013610 | 58641255 | | 24833 | 16090 | 31848 | 72771 |
S/G/Y/R/B/O |
NT_029223 | AL390234 | 58849941 | 3 | chr1 | NT_029223 | AL713859 | 58976411 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_029223 | AL390234 | 58849941 | 3 |   |   | AC013610 | 58849941 | | 51623 | 14653 | 9771 | 76047 |
S/G/Y/R/B/O |
NT_029223 | AL713859 | 58976411 | 3 |   |   |   |   |   |   |   |   |   |
| |
|
|
|