Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_004525

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004525	AC024998	219638762	1	chr1	NT_004525	AL365438	219641785	1	34820	17075	18411	70306
S/G/Y/R/B/O	NT_004525	AC024998	219638762	1			AC068290	219358638		27151	8445	12890	48486
S/G/Y/R/B/O	NT_004525	AL365438	219641785	1	chr1	NT_004525	AC096542	219772887	3	39294	0	0	39294
S/G/Y/R/B/O	NT_004525	AL365438	219641785	1	chr1	NT_034471	AL732372	1	3	18198	0	16864	35062
S/G/Y/R/B/O	NT_004525	AL365438	219641785	1	chr1	NT_034471	AL732372	1	3	18198	0	16864	35062
S/G/Y/R/B/O	NT_004525	AL365438	219641785	1			AC021798	126728376		17801	0	0	17801
S/G/Y/R/B/O	NT_004525	AC096542	219772887	3	chr1	NT_004525	AC099065	219892348	3	69658	0	0	69658
S/G/Y/R/B/O	NT_004525	AC096542	219772887	3			AC021798	23084		117655	5750	39620	163025
S/G/Y/R/B/O	NT_004525	AC099065	219892348	3	chr1	NT_004525	AL390122	220085080	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC099065	219892348	3			AC021798	219641785		61166	1544	18627	81337
S/G/Y/R/B/O	NT_004525	AL390122	220085080	3	chr1	NT_004525	AC092809	220180547	3	2623	0	0	2623
S/G/Y/R/B/O	NT_004525	AL390122	220085080	3			AC068290	219638762		46038	5036	9473	60547
S/G/Y/R/B/O	NT_004525	AC092809	220180547	3	chr1	NT_004525	AC099790	220375544	1	3676	0	0	3676
S/G/Y/R/B/O	NT_004525	AC092809	220180547	3			AC068290	219638762		52745	2775	0	55520
S/G/Y/R/B/O	NT_004525	AC099790	220375544	1	chr1	NT_004525	AC096537	220556998	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AC096537	220556998	3	chr1	NT_004525	AL596330	220674737	3	2342	0	0	2342
S/G/Y/R/B/O	NT_004525	AC096537	220556998	3			AC026235	220180547		153111	0	0	153111
S/G/Y/R/B/O	NT_004525	AC096537	220556998	3			AC026235	220180547		153111	0	0	153111
S/G/Y/R/B/O	NT_004525	AL596330	220674737	3	chr1	NT_004525	AL391811	220754394	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004525	AL596330	220674737	3			AC012126	220674737		68264	2120	7009	77393
S/G/Y/R/B/O	NT_004525	AL596330	220674737	3			AC034298	220674737		50860	4678	0	55538
S/G/Y/R/B/O	NT_004525	AL391811	220754394	3	chr1	NT_004525	AC093560	220902819	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL391811	220754394	3			AC012126	220754394		27224	839	7745	35808
S/G/Y/R/B/O	NT_004525	AL391811	220754394	3			AC034298	220754394		86343	13368	18397	118108
S/G/Y/R/B/O	NT_004525	AC093560	220902819	3	chr1	NT_004525	AL590547	221011367	3	0	0	1750	1750
S/G/Y/R/B/O	NT_004525	AC093560	220902819	3			AC034298	220674737		33632	6885	20677	61194
S/G/Y/R/B/O	NT_004525	AL590547	221011367	3	chr1	NT_004525	AL645769	221070486	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL590547	221011367	3			AC022922	221011367		30490	2933	0	33423
S/G/Y/R/B/O	NT_004525	AL590547	221011367	3			AC027498	221011367		20606	0	0	20606
S/G/Y/R/B/O	NT_004525	AL645769	221070486	3	chr1	NT_004525	AL357912	221094205	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL357912	221094205	3	chr1	NT_004525	AL162738	221222262	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL357912	221094205	3			AC027498	220902819		10438	0	0	10438
S/G/Y/R/B/O	NT_004525	AL162738	221222262	3	chr1	NT_004525	AL596134	221341990	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AL162738	221222262	3			AC027073	220902819		32331	2379	20395	55105
S/G/Y/R/B/O	NT_004525	AL596134	221341990	3	chr1	NT_004525	AC092811	221345912	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AC092811	221345912	3	chr1	NT_004525	AL356216	221536530	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AC092811	221345912	3			AC027073	221222262		30061	0	1058	31119
S/G/Y/R/B/O	NT_004525	AL356216	221536530	3	chr1	NT_004525	AL591380	221606087	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL591380	221606087	3	chr1	NT_004525	AC099066	221674289	3	0	1941	0	1941
S/G/Y/R/B/O	NT_004525	AL591380	221606087	3			AC021778	221345912		30516	3512	6085	40113
S/G/Y/R/B/O	NT_004525	AL591380	221606087	3			AC025060	221345912		35985	6782	2885	45652
S/G/Y/R/B/O	NT_004525	AL591380	221606087	3			AL160005	221674289		41374	2675	5590	49639
S/G/Y/R/B/O	NT_004525	AL591380	221606087	3			AL513528	221674289		42336	0	0	42336
S/G/Y/R/B/O	NT_004525	AC099066	221674289	3	chr1	NT_004525	AL591895	221821837	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AC099066	221674289	3			AC021778	221674289		62704	0	17589	80293
S/G/Y/R/B/O	NT_004525	AC099066	221674289	3			AC025060	221674289		21126	9834	13959	44919
S/G/Y/R/B/O	NT_004525	AC099066	221674289	3			AC058782	221674289		16430	0	0	16430
S/G/Y/R/B/O	NT_004525	AL591895	221821837	3	chr1	NT_004525	AL117348	221854344	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004525	AL591895	221821837	3			AC058782	221821837		35077	0	0	35077
S/G/Y/R/B/O	NT_004525	AL117348	221854344	3	chr1	NT_004525	AL133288	221980080	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL117348	221854344	3			AC058782	221854344		80436	0	4587	85023
S/G/Y/R/B/O	NT_004525	AL133288	221980080	3	chr1	NT_004525	AL512343	222031657	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL512343	222031657	3	chr1	NT_004525	AL592045	222134744	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL512343	222031657	3			AC044825	221821837		13989	7923	22781	44693
S/G/Y/R/B/O	NT_004525	AL592045	222134744	1	chr1	NT_004525	AL359742	222231438	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL359742	222231438	3	chr1	NT_004525	AL359704	222317634	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004525	AL359742	222231438	3			AL671974	222317634		74974	0	0	74974
S/G/Y/R/B/O	NT_004525	AL359704	222317634	3	chr1	NT_004525	AL357122	222487135	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AL359704	222317634	3			AC021762	222317634		33432	0	0	33432
S/G/Y/R/B/O	NT_004525	AL359704	222317634	3			AC026277	222317634		34768	0	0	34768
S/G/Y/R/B/O	NT_004525	AL359704	222317634	3			AC073830	222317634		63608	9521	42711	115840
S/G/Y/R/B/O	NT_004525	AL359704	222317634	3			AL359982	222231438		33454	4861	0	38315
S/G/Y/R/B/O	NT_004525	AL359704	222317634	3			AL671974	222231438		84635	0	0	84635
S/G/Y/R/B/O	NT_004525	AL357122	222487135	3	chr1	NT_004525	AL365444	222540792	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AL357122	222487135	3			AC021762	222231438		55106	0	0	55106
S/G/Y/R/B/O	NT_004525	AL357122	222487135	3			AC026277	222231438		55561	0	0	55561
S/G/Y/R/B/O	NT_004525	AL357122	222487135	3			AL359982	222317634		28899	0	4219	33118
S/G/Y/R/B/O	NT_004525	AL365444	222540792	3	chr1	NT_004525	AL359732	222719936	3	0	1990	0	1990
S/G/Y/R/B/O	NT_004525	AL365444	222540792	3			AC026277	222540792		61554	0	0	61554
S/G/Y/R/B/O	NT_004525	AL365444	222540792	3			AC073252	222540792		108836	11051	37022	156909
S/G/Y/R/B/O	NT_004525	AL365444	222540792	3			AL359982	222719936		52752	9994	16079	78825
S/G/Y/R/B/O	NT_004525	AL359732	222719936	3	chr1	NT_004525	AL391628	222811362	3	2006	0	0	2006
S/G/Y/R/B/O	NT_004525	AL391628	222811362	3	chr1	NT_004525	AL353689	222872262	3	2001	0	0	2001
S/G/Y/R/B/O	NT_004525	AL353689	222872262	3	chr1	NT_004525	AL451047	223066090	1	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL451047	223066090	1	chr1	NT_004525	AL627308	223133002	3	65984	0	0	65984
S/G/Y/R/B/O	NT_004525	AL627308	223133002	3	chr1	NT_004525	AL606462	223257158	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004525	AL606462	223257158	3	chr1	NT_004525	AL451054	223367559	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004525	AL451054	223367559	3	chr1	NT_004525	AL592310	223511126	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004525	AL451054	223367559	3			AL512842	223133002		73142	0	0	73142
S/G/Y/R/B/O	NT_004525	AL592310	223511126	3	chr1	NT_004525	AL136378	223622266	3	0	0	1862	1862
S/G/Y/R/B/O	NT_004525	AL136378	223622266	3	chr1	NT_004525	AL731702	223704923	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004525	AL136378	223622266	3			AL714029	223511126		36981	0	0	36981
S/G/Y/R/B/O	NT_004525	AL731702	223704923	3	chr1	NT_004525	AL356323	223747710	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL731702	223704923	3			AL714029	223622266		37627	2423	0	40050
S/G/Y/R/B/O	NT_004525	AL356323	223747710	3	chr1	NT_004525	AL360269	223781713	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004525	AL360269	223781713	3	chr1	NT_004525	AL136379	223921416	3	0	0	1887	1887
S/G/Y/R/B/O	NT_004525	AL360269	223781713	3			AC004916	223781713		67898	0	0	67898
S/G/Y/R/B/O	NT_004525	AL136379	223921416	3	chr1	NT_004525	AL359510	224047232	3	0	0	0	0
S/G/Y/R/B/O	NT_004525	AL136379	223921416	3			AC004916	219641785		62930	0	0	62930
S/G/Y/R/B/O	NT_004525	AL359510	224047232	3	chr1	NT_004525	AL353593	224140977	3	0	1991	0	1991
S/G/Y/R/B/O	NT_004525	AL353593	224140977	3	chr1	NT_004525	AL670729	224272932	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004525	AL353593	224140977	3			AC023889	224140977		73442	0	2439	75881
S/G/Y/R/B/O	NT_004525	AL670729	224272932	3	chr1	NT_004525	AL139288	224335096	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004525	AL670729	224272932	3			AC023889	224272932		20771	0	10938	31709
S/G/Y/R/B/O	NT_004525	AL139288	224335096	3
S/G/Y/R/B/O	NT_004525	AL139288	224335096	3			AC023889	224140977		27017	0	0	27017