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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_004525 | AC024998 | 219638762 | 1 | chr1 | NT_004525 | AL365438 | 219641785 | 1 | 34820 | 17075 | 18411 | 70306 |
S/G/Y/R/B/O |
NT_004525 | AC024998 | 219638762 | 1 |   |   | AC068290 | 219358638 | | 27151 | 8445 | 12890 | 48486 |
S/G/Y/R/B/O |
NT_004525 | AL365438 | 219641785 | 1 | chr1 | NT_004525 | AC096542 | 219772887 | 3 | 39294 | 0 | 0 | 39294 |
S/G/Y/R/B/O |
NT_004525 | AL365438 | 219641785 | 1 | chr1 | NT_034471 | AL732372 | 1 | 3 | 18198 | 0 | 16864 | 35062 |
S/G/Y/R/B/O |
NT_004525 | AL365438 | 219641785 | 1 | chr1 | NT_034471 | AL732372 | 1 | 3 | 18198 | 0 | 16864 | 35062 |
S/G/Y/R/B/O |
NT_004525 | AL365438 | 219641785 | 1 |   |   | AC021798 | 126728376 | | 17801 | 0 | 0 | 17801 |
S/G/Y/R/B/O |
NT_004525 | AC096542 | 219772887 | 3 | chr1 | NT_004525 | AC099065 | 219892348 | 3 | 69658 | 0 | 0 | 69658 |
S/G/Y/R/B/O |
NT_004525 | AC096542 | 219772887 | 3 |   |   | AC021798 | 23084 | | 117655 | 5750 | 39620 | 163025 |
S/G/Y/R/B/O |
NT_004525 | AC099065 | 219892348 | 3 | chr1 | NT_004525 | AL390122 | 220085080 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AC099065 | 219892348 | 3 |   |   | AC021798 | 219641785 | | 61166 | 1544 | 18627 | 81337 |
S/G/Y/R/B/O |
NT_004525 | AL390122 | 220085080 | 3 | chr1 | NT_004525 | AC092809 | 220180547 | 3 | 2623 | 0 | 0 | 2623 |
S/G/Y/R/B/O |
NT_004525 | AL390122 | 220085080 | 3 |   |   | AC068290 | 219638762 | | 46038 | 5036 | 9473 | 60547 |
S/G/Y/R/B/O |
NT_004525 | AC092809 | 220180547 | 3 | chr1 | NT_004525 | AC099790 | 220375544 | 1 | 3676 | 0 | 0 | 3676 |
S/G/Y/R/B/O |
NT_004525 | AC092809 | 220180547 | 3 |   |   | AC068290 | 219638762 | | 52745 | 2775 | 0 | 55520 |
S/G/Y/R/B/O |
NT_004525 | AC099790 | 220375544 | 1 | chr1 | NT_004525 | AC096537 | 220556998 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AC096537 | 220556998 | 3 | chr1 | NT_004525 | AL596330 | 220674737 | 3 | 2342 | 0 | 0 | 2342 |
S/G/Y/R/B/O |
NT_004525 | AC096537 | 220556998 | 3 |   |   | AC026235 | 220180547 | | 153111 | 0 | 0 | 153111 |
S/G/Y/R/B/O |
NT_004525 | AC096537 | 220556998 | 3 |   |   | AC026235 | 220180547 | | 153111 | 0 | 0 | 153111 |
S/G/Y/R/B/O |
NT_004525 | AL596330 | 220674737 | 3 | chr1 | NT_004525 | AL391811 | 220754394 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004525 | AL596330 | 220674737 | 3 |   |   | AC012126 | 220674737 | | 68264 | 2120 | 7009 | 77393 |
S/G/Y/R/B/O |
NT_004525 | AL596330 | 220674737 | 3 |   |   | AC034298 | 220674737 | | 50860 | 4678 | 0 | 55538 |
S/G/Y/R/B/O |
NT_004525 | AL391811 | 220754394 | 3 | chr1 | NT_004525 | AC093560 | 220902819 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL391811 | 220754394 | 3 |   |   | AC012126 | 220754394 | | 27224 | 839 | 7745 | 35808 |
S/G/Y/R/B/O |
NT_004525 | AL391811 | 220754394 | 3 |   |   | AC034298 | 220754394 | | 86343 | 13368 | 18397 | 118108 |
S/G/Y/R/B/O |
NT_004525 | AC093560 | 220902819 | 3 | chr1 | NT_004525 | AL590547 | 221011367 | 3 | 0 | 0 | 1750 | 1750 |
S/G/Y/R/B/O |
NT_004525 | AC093560 | 220902819 | 3 |   |   | AC034298 | 220674737 | | 33632 | 6885 | 20677 | 61194 |
S/G/Y/R/B/O |
NT_004525 | AL590547 | 221011367 | 3 | chr1 | NT_004525 | AL645769 | 221070486 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL590547 | 221011367 | 3 |   |   | AC022922 | 221011367 | | 30490 | 2933 | 0 | 33423 |
S/G/Y/R/B/O |
NT_004525 | AL590547 | 221011367 | 3 |   |   | AC027498 | 221011367 | | 20606 | 0 | 0 | 20606 |
S/G/Y/R/B/O |
NT_004525 | AL645769 | 221070486 | 3 | chr1 | NT_004525 | AL357912 | 221094205 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL357912 | 221094205 | 3 | chr1 | NT_004525 | AL162738 | 221222262 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL357912 | 221094205 | 3 |   |   | AC027498 | 220902819 | | 10438 | 0 | 0 | 10438 |
S/G/Y/R/B/O |
NT_004525 | AL162738 | 221222262 | 3 | chr1 | NT_004525 | AL596134 | 221341990 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AL162738 | 221222262 | 3 |   |   | AC027073 | 220902819 | | 32331 | 2379 | 20395 | 55105 |
S/G/Y/R/B/O |
NT_004525 | AL596134 | 221341990 | 3 | chr1 | NT_004525 | AC092811 | 221345912 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AC092811 | 221345912 | 3 | chr1 | NT_004525 | AL356216 | 221536530 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AC092811 | 221345912 | 3 |   |   | AC027073 | 221222262 | | 30061 | 0 | 1058 | 31119 |
S/G/Y/R/B/O |
NT_004525 | AL356216 | 221536530 | 3 | chr1 | NT_004525 | AL591380 | 221606087 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL591380 | 221606087 | 3 | chr1 | NT_004525 | AC099066 | 221674289 | 3 | 0 | 1941 | 0 | 1941 |
S/G/Y/R/B/O |
NT_004525 | AL591380 | 221606087 | 3 |   |   | AC021778 | 221345912 | | 30516 | 3512 | 6085 | 40113 |
S/G/Y/R/B/O |
NT_004525 | AL591380 | 221606087 | 3 |   |   | AC025060 | 221345912 | | 35985 | 6782 | 2885 | 45652 |
S/G/Y/R/B/O |
NT_004525 | AL591380 | 221606087 | 3 |   |   | AL160005 | 221674289 | | 41374 | 2675 | 5590 | 49639 |
S/G/Y/R/B/O |
NT_004525 | AL591380 | 221606087 | 3 |   |   | AL513528 | 221674289 | | 42336 | 0 | 0 | 42336 |
S/G/Y/R/B/O |
NT_004525 | AC099066 | 221674289 | 3 | chr1 | NT_004525 | AL591895 | 221821837 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AC099066 | 221674289 | 3 |   |   | AC021778 | 221674289 | | 62704 | 0 | 17589 | 80293 |
S/G/Y/R/B/O |
NT_004525 | AC099066 | 221674289 | 3 |   |   | AC025060 | 221674289 | | 21126 | 9834 | 13959 | 44919 |
S/G/Y/R/B/O |
NT_004525 | AC099066 | 221674289 | 3 |   |   | AC058782 | 221674289 | | 16430 | 0 | 0 | 16430 |
S/G/Y/R/B/O |
NT_004525 | AL591895 | 221821837 | 3 | chr1 | NT_004525 | AL117348 | 221854344 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004525 | AL591895 | 221821837 | 3 |   |   | AC058782 | 221821837 | | 35077 | 0 | 0 | 35077 |
S/G/Y/R/B/O |
NT_004525 | AL117348 | 221854344 | 3 | chr1 | NT_004525 | AL133288 | 221980080 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL117348 | 221854344 | 3 |   |   | AC058782 | 221854344 | | 80436 | 0 | 4587 | 85023 |
S/G/Y/R/B/O |
NT_004525 | AL133288 | 221980080 | 3 | chr1 | NT_004525 | AL512343 | 222031657 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL512343 | 222031657 | 3 | chr1 | NT_004525 | AL592045 | 222134744 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL512343 | 222031657 | 3 |   |   | AC044825 | 221821837 | | 13989 | 7923 | 22781 | 44693 |
S/G/Y/R/B/O |
NT_004525 | AL592045 | 222134744 | 1 | chr1 | NT_004525 | AL359742 | 222231438 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL359742 | 222231438 | 3 | chr1 | NT_004525 | AL359704 | 222317634 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004525 | AL359742 | 222231438 | 3 |   |   | AL671974 | 222317634 | | 74974 | 0 | 0 | 74974 |
S/G/Y/R/B/O |
NT_004525 | AL359704 | 222317634 | 3 | chr1 | NT_004525 | AL357122 | 222487135 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AL359704 | 222317634 | 3 |   |   | AC021762 | 222317634 | | 33432 | 0 | 0 | 33432 |
S/G/Y/R/B/O |
NT_004525 | AL359704 | 222317634 | 3 |   |   | AC026277 | 222317634 | | 34768 | 0 | 0 | 34768 |
S/G/Y/R/B/O |
NT_004525 | AL359704 | 222317634 | 3 |   |   | AC073830 | 222317634 | | 63608 | 9521 | 42711 | 115840 |
S/G/Y/R/B/O |
NT_004525 | AL359704 | 222317634 | 3 |   |   | AL359982 | 222231438 | | 33454 | 4861 | 0 | 38315 |
S/G/Y/R/B/O |
NT_004525 | AL359704 | 222317634 | 3 |   |   | AL671974 | 222231438 | | 84635 | 0 | 0 | 84635 |
S/G/Y/R/B/O |
NT_004525 | AL357122 | 222487135 | 3 | chr1 | NT_004525 | AL365444 | 222540792 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AL357122 | 222487135 | 3 |   |   | AC021762 | 222231438 | | 55106 | 0 | 0 | 55106 |
S/G/Y/R/B/O |
NT_004525 | AL357122 | 222487135 | 3 |   |   | AC026277 | 222231438 | | 55561 | 0 | 0 | 55561 |
S/G/Y/R/B/O |
NT_004525 | AL357122 | 222487135 | 3 |   |   | AL359982 | 222317634 | | 28899 | 0 | 4219 | 33118 |
S/G/Y/R/B/O |
NT_004525 | AL365444 | 222540792 | 3 | chr1 | NT_004525 | AL359732 | 222719936 | 3 | 0 | 1990 | 0 | 1990 |
S/G/Y/R/B/O |
NT_004525 | AL365444 | 222540792 | 3 |   |   | AC026277 | 222540792 | | 61554 | 0 | 0 | 61554 |
S/G/Y/R/B/O |
NT_004525 | AL365444 | 222540792 | 3 |   |   | AC073252 | 222540792 | | 108836 | 11051 | 37022 | 156909 |
S/G/Y/R/B/O |
NT_004525 | AL365444 | 222540792 | 3 |   |   | AL359982 | 222719936 | | 52752 | 9994 | 16079 | 78825 |
S/G/Y/R/B/O |
NT_004525 | AL359732 | 222719936 | 3 | chr1 | NT_004525 | AL391628 | 222811362 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_004525 | AL391628 | 222811362 | 3 | chr1 | NT_004525 | AL353689 | 222872262 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_004525 | AL353689 | 222872262 | 3 | chr1 | NT_004525 | AL451047 | 223066090 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL451047 | 223066090 | 1 | chr1 | NT_004525 | AL627308 | 223133002 | 3 | 65984 | 0 | 0 | 65984 |
S/G/Y/R/B/O |
NT_004525 | AL627308 | 223133002 | 3 | chr1 | NT_004525 | AL606462 | 223257158 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004525 | AL606462 | 223257158 | 3 | chr1 | NT_004525 | AL451054 | 223367559 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004525 | AL451054 | 223367559 | 3 | chr1 | NT_004525 | AL592310 | 223511126 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004525 | AL451054 | 223367559 | 3 |   |   | AL512842 | 223133002 | | 73142 | 0 | 0 | 73142 |
S/G/Y/R/B/O |
NT_004525 | AL592310 | 223511126 | 3 | chr1 | NT_004525 | AL136378 | 223622266 | 3 | 0 | 0 | 1862 | 1862 |
S/G/Y/R/B/O |
NT_004525 | AL136378 | 223622266 | 3 | chr1 | NT_004525 | AL731702 | 223704923 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004525 | AL136378 | 223622266 | 3 |   |   | AL714029 | 223511126 | | 36981 | 0 | 0 | 36981 |
S/G/Y/R/B/O |
NT_004525 | AL731702 | 223704923 | 3 | chr1 | NT_004525 | AL356323 | 223747710 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL731702 | 223704923 | 3 |   |   | AL714029 | 223622266 | | 37627 | 2423 | 0 | 40050 |
S/G/Y/R/B/O |
NT_004525 | AL356323 | 223747710 | 3 | chr1 | NT_004525 | AL360269 | 223781713 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_004525 | AL360269 | 223781713 | 3 | chr1 | NT_004525 | AL136379 | 223921416 | 3 | 0 | 0 | 1887 | 1887 |
S/G/Y/R/B/O |
NT_004525 | AL360269 | 223781713 | 3 |   |   | AC004916 | 223781713 | | 67898 | 0 | 0 | 67898 |
S/G/Y/R/B/O |
NT_004525 | AL136379 | 223921416 | 3 | chr1 | NT_004525 | AL359510 | 224047232 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_004525 | AL136379 | 223921416 | 3 |   |   | AC004916 | 219641785 | | 62930 | 0 | 0 | 62930 |
S/G/Y/R/B/O |
NT_004525 | AL359510 | 224047232 | 3 | chr1 | NT_004525 | AL353593 | 224140977 | 3 | 0 | 1991 | 0 | 1991 |
S/G/Y/R/B/O |
NT_004525 | AL353593 | 224140977 | 3 | chr1 | NT_004525 | AL670729 | 224272932 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_004525 | AL353593 | 224140977 | 3 |   |   | AC023889 | 224140977 | | 73442 | 0 | 2439 | 75881 |
S/G/Y/R/B/O |
NT_004525 | AL670729 | 224272932 | 3 | chr1 | NT_004525 | AL139288 | 224335096 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_004525 | AL670729 | 224272932 | 3 |   |   | AC023889 | 224272932 | | 20771 | 0 | 10938 | 31709 |
S/G/Y/R/B/O |
NT_004525 | AL139288 | 224335096 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_004525 | AL139288 | 224335096 | 3 |   |   | AC023889 | 224140977 | | 27017 | 0 | 0 | 27017 |
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