Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034471	NT_037484	NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917
NT_028054	NT_032967	NT_021937	NT_004873	NT_030584	NT_029218	NT_004610	NT_004391
NT_004782	NT_037485	NT_028053	NT_004538	NT_034379	NT_037486	NT_034429	NT_004511
NT_037487	NT_004852	NT_032977	NT_029223	NT_029865	NT_004636	NT_032948	NT_004464
NT_034383	NT_004483	NT_037488	NT_004902	NT_034385	NT_026943	NT_034386	NT_029231
NT_004658	NT_004686	NT_037489	NT_021979	NT_034389	NT_037490	NT_034392	NT_028050
NT_030567	NT_021977	NT_029860	NT_037491	NT_019273	NT_004754	NT_022052	NT_022071
NT_004434	NT_037492	NT_037493	NT_037494	NT_034398	NT_034400	NT_034401	NT_034402
NT_034403	NT_037495	NT_032962	NT_037496	NT_021907	NT_037497	NT_004858	NT_037498
NT_004668	NT_037499	NT_029874	NT_004487	NT_037500	NT_021905	NT_004671	NT_029862
NT_034408	NT_034409	NT_037501	NT_034410	NT_034411	NT_021877	NT_034412	NT_004612
NT_037503	NT_021953	NT_004861	NT_004525	NT_004559	NT_031728	NT_021973	NT_004753
NT_004433	NT_030561	NT_004836	NT_004734	NT_004536	NT_032964	NT_037504	NT_037505
NT_031730	NT_029870	NT_032969	NT_032968

NT_021953

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_021953	AL358858	212286420	3	chr1	NT_021953	AL445650	212380276	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AL445650	212380276	3	chr1	NT_021953	AL512650	212533881	3	0	1989	0	1989
S/G/Y/R/B/O	NT_021953	AL445650	212380276	3			AL356008	212095994		12903	0	0	12903
S/G/Y/R/B/O	NT_021953	AL445650	212380276	3			AL390775	212095994		12808	0	0	12808
S/G/Y/R/B/O	NT_021953	AL512650	212533881	3	chr1	NT_021953	AL513312	212589198	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL512650	212533881	3			AC019015	212533881		41123	5482	6687	53292
S/G/Y/R/B/O	NT_021953	AL512650	212533881	3			AL356008	212533881		57317	0	0	57317
S/G/Y/R/B/O	NT_021953	AL512650	212533881	3			AL390775	212533881		46399	2036	2823	51258
S/G/Y/R/B/O	NT_021953	AL513312	212589198	3	chr1	NT_021953	AC096635	212666875	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL513312	212589198	3			AC019015	212589198		69376	0	1230	70606
S/G/Y/R/B/O	NT_021953	AL513312	212589198	3			AL356008	212666875		79676	0	0	79676
S/G/Y/R/B/O	NT_021953	AL513312	212589198	3			AL390775	212666875		49658	2854	0	52512
S/G/Y/R/B/O	NT_021953	AC096635	212666875	3	chr1	NT_021953	AL603752	212838131	3	0	1998	0	1998
S/G/Y/R/B/O	NT_021953	AC096635	212666875	3			AC012268	212533881		12158	0	0	12158
S/G/Y/R/B/O	NT_021953	AC096635	212666875	3			AL356008	212533881		26646	0	0	26646
S/G/Y/R/B/O	NT_021953	AC096635	212666875	3			AL450429	212533881		126979	0	0	126979
S/G/Y/R/B/O	NT_021953	AL603752	212838131	3	chr1	NT_021953	AL512626	212884999	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL603752	212838131	3			AC012268	212838131		45403	0	995	46398
S/G/Y/R/B/O	NT_021953	AL603752	212838131	3			AL450429	212666875		22292	0	26526	48818
S/G/Y/R/B/O	NT_021953	AL512626	212884999	3	chr1	NT_021953	AC096634	212989857	3	0	1998	0	1998
S/G/Y/R/B/O	NT_021953	AL512626	212884999	3			AC012268	212884999		40518	0	49488	90006
S/G/Y/R/B/O	NT_021953	AC096634	212989857	3	chr1	NT_021953	AL391216	213151783	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021953	AC096634	212989857	3			AC012268	212838131		11829	0	0	11829
S/G/Y/R/B/O	NT_021953	AL391216	213151783	3	chr1	NT_021953	AL499609	213251325	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL499609	213251325	3	chr1	NT_021953	AC096641	213385840	3	0	1989	0	1989
S/G/Y/R/B/O	NT_021953	AL499609	213251325	3			AC025988	213251325		71063	2379	0	73442
S/G/Y/R/B/O	NT_021953	AC096641	213385840	3	chr1	NT_021953	AL354659	213568991	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AC096641	213385840	3			AC009420	213151783		148051	0	0	148051
S/G/Y/R/B/O	NT_021953	AC096641	213385840	3			AC025988	213151783		91709	0	0	91709
S/G/Y/R/B/O	NT_021953	AL354659	213568991	3	chr1	NT_021953	AC097061	213702051	3	30310	0	0	30310
S/G/Y/R/B/O	NT_021953	AL354659	213568991	3			AC009420	213251325		27467	0	0	27467
S/G/Y/R/B/O	NT_021953	AL354659	213568991	3			AL513172	213702051		81689	2514	7915	92118
S/G/Y/R/B/O	NT_021953	AC097061	213702051	3	chr1	NT_021953	AL445428	213837052	3	0	0	1628	1628
S/G/Y/R/B/O	NT_021953	AC097061	213702051	3			AL513172	213837052		44154	2090	0	46244
S/G/Y/R/B/O	NT_021953	AL445428	213837052	3	chr1	NT_021953	AL591414	213926293	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL591414	213926293	3	chr1	NT_021953	AL357975	213937557	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL357975	213937557	3	chr1	NT_021953	AL355526	213994755	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL355526	213994755	3	chr1	NT_021953	AC099337	214136934	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AL355526	213994755	3			AC024505	213926293		71133	8550	9207	88890
S/G/Y/R/B/O	NT_021953	AC099337	214136934	3	chr1	NT_021953	AC096638	214314259	3	3768	0	0	3768
S/G/Y/R/B/O	NT_021953	AC099337	214136934	3			AC024505	213937557		32810	0	1004	33814
S/G/Y/R/B/O	NT_021953	AC099337	214136934	3			AL390724	214314259		21338	0	20699	42037
S/G/Y/R/B/O	NT_021953	AC096638	214314259	3	chr1	NT_021953	AC092015	214496275	3	13335	0	0	13335
S/G/Y/R/B/O	NT_021953	AC096638	214314259	3			AC025404	214314259		19740	0	16607	36347
S/G/Y/R/B/O	NT_021953	AC096638	214314259	3			AL359456	214136934		137301	0	25535	162836
S/G/Y/R/B/O	NT_021953	AC096638	214314259	3			AL390724	214136934		104883	0	12913	117796
S/G/Y/R/B/O	NT_021953	AC096638	214314259	3			AL592288	214136934		13340	0	0	13340
S/G/Y/R/B/O	NT_021953	AC092015	214496275	3	chr1	NT_021953	AC022800	214644743	1	29362	0	18294	47656
S/G/Y/R/B/O	NT_021953	AC092015	214496275	3			AC025404	214644743		117019	1606	4365	122990
S/G/Y/R/B/O	NT_021953	AC092015	214496275	3			AL359456	214314259		27577	0	0	27577
S/G/Y/R/B/O	NT_021953	AC092015	214496275	3			AL592288	214314259		161136	0	0	161136
S/G/Y/R/B/O	NT_021953	AC022800	214644743	1	chr1	NT_021953	AL831720	214750353	3	0	0	3457	3457
S/G/Y/R/B/O	NT_021953	AC022800	214644743	1			AC025404	214314259		20816	0	0	20816
S/G/Y/R/B/O	NT_021953	AC022800	214644743	1			AL592288	214496275		28861	0	18274	47135
S/G/Y/R/B/O	NT_021953	AL831720	214750353	3	chr1	NT_021953	AC097060	214857571	3	0	1955	0	1955
S/G/Y/R/B/O	NT_021953	AL831720	214750353	3			AL392004	214857571		54952	0	0	54952
S/G/Y/R/B/O	NT_021953	AC097060	214857571	3	chr1	NT_021953	AC092808	214996748	3	29410	0	0	29410
S/G/Y/R/B/O	NT_021953	AC097060	214857571	3			AC026014	214857571		125721	4723	3279	133723
S/G/Y/R/B/O	NT_021953	AC097060	214857571	3			AC084714	214857571		13614	8241	4770	26625
S/G/Y/R/B/O	NT_021953	AC097060	214857571	3			AL392004	214996748		38772	0	0	38772
S/G/Y/R/B/O	NT_021953	AC092808	214996748	3	chr1	NT_021953	AL360093	215118729	3	0	0	1720	1720
S/G/Y/R/B/O	NT_021953	AC092808	214996748	3			AC026014	214750353		28493	0	642	29135
S/G/Y/R/B/O	NT_021953	AC092808	214996748	3			AC027383	214750353		49148	0	2428	51576
S/G/Y/R/B/O	NT_021953	AC092808	214996748	3			AC084714	214750353		37041	20576	21169	78786
S/G/Y/R/B/O	NT_021953	AL360093	215118729	3	chr1	NT_021953	AC096642	215255885	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL360093	215118729	3			AC027383	215118729		63740	0	0	63740
S/G/Y/R/B/O	NT_021953	AL360093	215118729	3			AC027383	215118729		63740	0	0	63740
S/G/Y/R/B/O	NT_021953	AC096642	215255885	3	chr1	NT_021953	AL513283	215434933	3	0	1994	0	1994
S/G/Y/R/B/O	NT_021953	AC096642	215255885	3			AL358973	215255885		115096	0	0	115096
S/G/Y/R/B/O	NT_021953	AL513283	215434933	3	chr1	NT_021953	AL356364	215532524	3	0	1995	0	1995
S/G/Y/R/B/O	NT_021953	AL513283	215434933	3			AL358973	215532524		87169	0	0	87169
S/G/Y/R/B/O	NT_021953	AL356364	215532524	3	chr1	NT_021953	AC096643	215633158	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AC096643	215633158	3	chr1	NT_021953	AC093562	215795120	3	36157	0	0	36157
S/G/Y/R/B/O	NT_021953	AC093562	215795120	3	chr1	NT_021953	AL360008	215963823	3	0	0	1711	1711
S/G/Y/R/B/O	NT_021953	AL360008	215963823	3	chr1	NT_021953	AC103590	215965817	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AC103590	215965817	3	chr1	NT_021953	AL445435	216176873	3	55927	0	0	55927
S/G/Y/R/B/O	NT_021953	AC103590	215965817	3			AC012440	215795120		59447	5543	27530	92520
S/G/Y/R/B/O	NT_021953	AC103590	215965817	3			AC026071	215795120		96084	5881	53005	154970
S/G/Y/R/B/O	NT_021953	AL445435	216176873	3	chr1	NT_021953	AL451081	216310899	3	0	0	1547	1547
S/G/Y/R/B/O	NT_021953	AL445435	216176873	3			AC012440	216176873		46206	0	5243	51449
S/G/Y/R/B/O	NT_021953	AL445435	216176873	3			AC026071	216176873		17609	1898	0	19507
S/G/Y/R/B/O	NT_021953	AL451081	216310899	3	chr1	NT_021953	AC096644	216385092	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AC096644	216385092	3	chr1	NT_021953	AC096640	216534992	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AC096640	216534992	3	chr1	NT_021953	AL592406	216642842	3	0	1942	0	1942
S/G/Y/R/B/O	NT_021953	AC096640	216534992	3			AC016314	216310899		61378	0	6080	67458
S/G/Y/R/B/O	NT_021953	AL592406	216642842	3	chr1	NT_021953	AL359353	216762437	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL592406	216642842	3			AC016314	216642842		49153	0	0	49153
S/G/Y/R/B/O	NT_021953	AL592406	216642842	3			AC025710	216642842		29625	20861	28037	78523
S/G/Y/R/B/O	NT_021953	AL592406	216642842	3			AC091566	216642842		60278	0	2290	62568
S/G/Y/R/B/O	NT_021953	AL359353	216762437	3	chr1	NT_021953	AL606726	216794352	3	0	0	1734	1734
S/G/Y/R/B/O	NT_021953	AL359353	216762437	3			AC025710	216762437		12606	6367	10606	29579
S/G/Y/R/B/O	NT_021953	AL359353	216762437	3			AC091566	216762437		23114	0	0	23114
S/G/Y/R/B/O	NT_021953	AL606726	216794352	3	chr1	NT_021953	AL445423	216806889	3	0	0	1743	1743
S/G/Y/R/B/O	NT_021953	AL445423	216806889	3	chr1	NT_021953	AC118468	216982830	3	2562	0	0	2562
S/G/Y/R/B/O	NT_021953	AL445423	216806889	3			AL603862	216982830		10783	4411	0	15194
S/G/Y/R/B/O	NT_021953	AC118468	216982830	3	chr1	NT_021953	AL445466	216995805	3	0	1276	0	1276
S/G/Y/R/B/O	NT_021953	AC118468	216982830	3			AL603862	216995805		15520	0	0	15520
S/G/Y/R/B/O	NT_021953	AL445466	216995805	3	chr1	NT_021953	AL359833	217158568	3	0	0	120	120
S/G/Y/R/B/O	NT_021953	AL445466	216995805	3			AC015608	216995805		23755	0	0	23755
S/G/Y/R/B/O	NT_021953	AL445466	216995805	3			AL603862	217158568		164037	0	0	164037
S/G/Y/R/B/O	NT_021953	AL359833	217158568	3	chr1	NT_021953	AL445470	217280462	3	0	0	100	100
S/G/Y/R/B/O	NT_021953	AL359833	217158568	3			AC015608	217158568		35606	0	6430	42036
S/G/Y/R/B/O	NT_021953	AL359833	217158568	3			AL603862	217280462		122014	0	0	122014
S/G/Y/R/B/O	NT_021953	AL445470	217280462	3	chr1	NT_021953	AL662928	217366694	3	0	2000	0	2000
S/G/Y/R/B/O	NT_021953	AL662928	217366694	3	chr1	NT_021953	AL591179	217453262	1	61958	0	0	61958
S/G/Y/R/B/O	NT_021953	AL591179	217453262	1	chr1	NT_021953	AL360013	217590258	3	44340	0	0	44340
S/G/Y/R/B/O	NT_021953	AL591179	217453262	1	chr20	NT_011387	AL109618	6135096	3	14436	5442	9866	29744
S/G/Y/R/B/O	NT_021953	AL591179	217453262	1			AL390727	217590258		15472	10313	19561	45346
S/G/Y/R/B/O	NT_021953	AL591179	217453262	1			AL390737	217590258		18479	5443	18418	42340
S/G/Y/R/B/O	NT_021953	AL360013	217590258	3	chr1	NT_021953	AL356788	217745415	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL356788	217745415	3	chr1	NT_021953	AL590966	217768657	3	0	0	1894	1894
S/G/Y/R/B/O	NT_021953	AL590966	217768657	3	chr1	NT_021953	AL592483	217932245	3	0	1997	0	1997
S/G/Y/R/B/O	NT_021953	AL592483	217932245	3	chr1	NT_021953	AC092765	218018822	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AL592483	217932245	3			AL391061	217932245		40013	2075	10284	52372
S/G/Y/R/B/O	NT_021953	AC092765	218018822	3	chr1	NT_021953	AL606493	218207083	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AC092765	218018822	3			AC015595	217768657		58626	19615	3233	81474
S/G/Y/R/B/O	NT_021953	AC092765	218018822	3			AL391061	217768657		52486	0	8294	60780
S/G/Y/R/B/O	NT_021953	AL606493	218207083	3	chr1	NT_021953	AL356108	218213692	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL356108	218213692	3	chr1	NT_021953	AL158171	218374039	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021953	AL356108	218213692	3			AC015595	218213692		36926	14262	2807	53995
S/G/Y/R/B/O	NT_021953	AL356108	218213692	3			AC025642	218213692		64527	0	25431	89958
S/G/Y/R/B/O	NT_021953	AL158171	218374039	3	chr1	NT_021953	AL513363	218423039	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021953	AL513363	218423039	3	chr1	NT_021953	AL513314	218530512	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL513363	218423039	3			AL356431	218374039		11641	0	0	11641
S/G/Y/R/B/O	NT_021953	AL513314	218530512	3	chr1	NT_021953	AL592148	218586717	3	0	2000	0	2000
S/G/Y/R/B/O	NT_021953	AL513314	218530512	3			AL356431	181483764		21949	0	0	21949
S/G/Y/R/B/O	NT_021953	AL592148	218586717	3	chr1	NT_021953	AL392172	218778751	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AL592148	218586717	3			AC026068	146318		93565	0	14062	107627
S/G/Y/R/B/O	NT_021953	AL592148	218586717	3			AL590088	218530512		53661	0	70898	124559
S/G/Y/R/B/O	NT_021953	AL392172	218778751	3	chr1	NT_021953	AL513544	218972586	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021953	AL392172	218778751	3			AL590088	218972586		21705	0	1347	23052
S/G/Y/R/B/O	NT_021953	AL513544	218972586	3	chr1	NT_021953	AC093152	218985956	3	0	0	0	0
S/G/Y/R/B/O	NT_021953	AC093152	218985956	3	chr1	NT_021953	AC021194	219135403	1	36077	2003	41718	79798
S/G/Y/R/B/O	NT_021953	AC021194	219135403	1