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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_037887 | AC010552 | 12001 | 3 | chr16 | NT_037887 | Z84721 | 214890 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AC010552 | 12001 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 17351 | 0 | 1105 | 18456 |
S/G/Y/R/B/O |
NT_037887 | Z84721 | 214890 | 3 | chr16 | NT_037887 | Z69706 | 253479 | 3 | 0 | 0 | 103 | 103 |
S/G/Y/R/B/O |
NT_037887 | Z69706 | 253479 | 3 | chr16 | NT_037887 | Z69890 | 276541 | 3 | 0 | 0 | 101 | 101 |
S/G/Y/R/B/O |
NT_037887 | Z69890 | 276541 | 3 | chr16 | NT_037887 | AC004754 | 304705 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AC004754 | 304705 | 3 | chr16 | NT_037887 | Z69667 | 343798 | 3 | 10112 | 0 | 0 | 10112 |
S/G/Y/R/B/O |
NT_037887 | Z69667 | 343798 | 3 | chr16 | NT_037887 | Z99754 | 365243 | 3 | 0 | 0 | 104 | 104 |
S/G/Y/R/B/O |
NT_037887 | Z69667 | 343798 | 3 |   |   | AC069076 | 304705 | | 11648 | 5268 | 4603 | 21519 |
S/G/Y/R/B/O |
NT_037887 | Z99754 | 365243 | 3 | chr16 | NT_037887 | AC004652 | 387168 | 3 | 13138 | 0 | 0 | 13138 |
S/G/Y/R/B/O |
NT_037887 | Z99754 | 365243 | 3 |   |   | AC026836 | 387168 | | 15382 | 0 | 1979 | 17361 |
S/G/Y/R/B/O |
NT_037887 | Z99754 | 365243 | 3 |   |   | AC069076 | 387168 | | 10361 | 0 | 1381 | 11742 |
S/G/Y/R/B/O |
NT_037887 | AC004652 | 387168 | 3 | chr16 | NT_037887 | AC005202 | 410441 | 3 | 10935 | 0 | 0 | 10935 |
S/G/Y/R/B/O |
NT_037887 | AC004652 | 387168 | 3 |   |   | AC026836 | 410441 | | 31750 | 0 | 0 | 31750 |
S/G/Y/R/B/O |
NT_037887 | AC004652 | 387168 | 3 |   |   | AC069076 | 410441 | | 25497 | 0 | 3019 | 28516 |
S/G/Y/R/B/O |
NT_037887 | AC005202 | 410441 | 3 | chr16 | NT_037887 | Z97634 | 438627 | 3 | 0 | 1458 | 0 | 1458 |
S/G/Y/R/B/O |
NT_037887 | AC005202 | 410441 | 3 |   |   | AC026836 | 387168 | | 19904 | 3251 | 0 | 23155 |
S/G/Y/R/B/O |
NT_037887 | AC005202 | 410441 | 3 |   |   | AC069076 | 387168 | | 16942 | 0 | 1647 | 18589 |
S/G/Y/R/B/O |
NT_037887 | Z97634 | 438627 | 3 | chr16 | NT_037887 | AL023881 | 472140 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | Z97634 | 438627 | 3 |   |   | AC026836 | 410441 | | 10387 | 9650 | 1452 | 21489 |
S/G/Y/R/B/O |
NT_037887 | AL023881 | 472140 | 3 | chr16 | NT_037887 | AL049542 | 507619 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AL023881 | 472140 | 3 |   |   | AC026836 | 472140 | | 11404 | 5773 | 5307 | 22484 |
S/G/Y/R/B/O |
NT_037887 | AL049542 | 507619 | 3 | chr16 | NT_037887 | Z98882 | 566404 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | Z98882 | 566404 | 3 | chr16 | NT_037887 | Z97986 | 602811 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | Z97986 | 602811 | 3 | chr16 | NT_037887 | Z98883 | 639018 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | Z98883 | 639018 | 3 | chr16 | NT_037887 | Z98881 | 672722 | 3 | 0 | 0 | 104 | 104 |
S/G/Y/R/B/O |
NT_037887 | Z98881 | 672722 | 3 | chr16 | NT_037887 | Z84479 | 676051 | 3 | 0 | 0 | 104 | 104 |
S/G/Y/R/B/O |
NT_037887 | Z84479 | 676051 | 3 | chr16 | NT_037887 | AL022341 | 707644 | 3 | 0 | 0 | 105 | 105 |
S/G/Y/R/B/O |
NT_037887 | Z84479 | 676051 | 3 |   |   | AC109444 | 639018 | | 30396 | 0 | 0 | 30396 |
S/G/Y/R/B/O |
NT_037887 | AL022341 | 707644 | 3 | chr16 | NT_037887 | Z92544 | 728078 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL022341 | 707644 | 3 |   |   | AC109444 | 672722 | | 20524 | 0 | 0 | 20524 |
S/G/Y/R/B/O |
NT_037887 | AL022341 | 707644 | 3 |   |   | AC133915 | 672722 | | 11320 | 0 | 0 | 11320 |
S/G/Y/R/B/O |
NT_037887 | Z92544 | 728078 | 3 | chr16 | NT_037887 | Z97653 | 764778 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | Z92544 | 728078 | 3 |   |   | AC109444 | 728078 | | 36626 | 0 | 0 | 36626 |
S/G/Y/R/B/O |
NT_037887 | Z97653 | 764778 | 3 | chr16 | NT_037887 | Z98258 | 789720 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | Z97653 | 764778 | 3 |   |   | AC109444 | 764778 | | 24463 | 514 | 0 | 24977 |
S/G/Y/R/B/O |
NT_037887 | Z98258 | 789720 | 3 | chr16 | NT_037887 | AL031258 | 818455 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AL031258 | 818455 | 3 | chr16 | NT_037887 | AL031033 | 855658 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AL031258 | 818455 | 3 |   |   | AC067772 | 764778 | | 13782 | 5654 | 0 | 19436 |
S/G/Y/R/B/O |
NT_037887 | AL031033 | 855658 | 3 | chr16 | NT_037887 | AL023882 | 881373 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AL031033 | 855658 | 3 |   |   | AC067772 | 764778 | | 11427 | 0 | 13688 | 25115 |
S/G/Y/R/B/O |
NT_037887 | AL031033 | 855658 | 3 |   |   | AC092381 | 764778 | | 25760 | 0 | 0 | 25760 |
S/G/Y/R/B/O |
NT_037887 | AL023882 | 881373 | 3 | chr16 | NT_037887 | AL031008 | 916749 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL023882 | 881373 | 3 |   |   | AC067772 | 764778 | | 27701 | 4658 | 1482 | 33841 |
S/G/Y/R/B/O |
NT_037887 | AL023882 | 881373 | 3 |   |   | AC092381 | 764778 | | 18599 | 0 | 7357 | 25956 |
S/G/Y/R/B/O |
NT_037887 | AL031008 | 916749 | 3 | chr16 | NT_037887 | AL031716 | 932692 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AL031716 | 932692 | 3 | chr16 | NT_037887 | AL008727 | 955980 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL008727 | 955980 | 3 | chr16 | NT_037887 | Z93041 | 988326 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL008727 | 955980 | 3 |   |   | AC067772 | 955980 | | 26882 | 0 | 0 | 26882 |
S/G/Y/R/B/O |
NT_037887 | AL008727 | 955980 | 3 |   |   | Z97651 | 988326 | | 29424 | 0 | 2951 | 32375 |
S/G/Y/R/B/O |
NT_037887 | Z93041 | 988326 | 3 | chr16 | NT_037887 | AC009041 | 1012393 | 2 | 11346 | 0 | 0 | 11346 |
S/G/Y/R/B/O |
NT_037887 | Z93041 | 988326 | 3 |   |   | AC012004 | 1012393 | | 23300 | 0 | 0 | 23300 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 | chr16 | NT_037887 | AL031713 | 1145720 | 3 | 23806 | 2805 | 0 | 26611 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 |   |   | AC012004 | 955980 | | 54695 | 7208 | 69939 | 131842 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 |   |   | AC087563 | 955980 | | 136413 | 4594 | 27109 | 168116 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 |   |   | AL024496 | 955980 | | 22610 | 0 | 0 | 22610 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 |   |   | AL031706 | 955980 | | 12415 | 0 | 0 | 12415 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 |   |   | AL031707 | 955980 | | 28061 | 0 | 0 | 28061 |
S/G/Y/R/B/O |
NT_037887 | AC009041 | 1012393 | 2 |   |   | Z99757 | 988326 | | 30897 | 574 | 0 | 31471 |
S/G/Y/R/B/O |
NT_037887 | AL031713 | 1145720 | 3 | chr16 | NT_037887 | AL031598 | 1178722 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL031713 | 1145720 | 3 |   |   | AC087563 | 1012393 | | 32827 | 0 | 1054 | 33881 |
S/G/Y/R/B/O |
NT_037887 | AL031598 | 1178722 | 3 | chr16 | NT_037887 | AC120498 | 1199852 | 3 | 11778 | 0 | 0 | 11778 |
S/G/Y/R/B/O |
NT_037887 | AC120498 | 1199852 | 3 | chr16 | NT_037887 | AL031714 | 1378279 | 3 | 5454 | 0 | 0 | 5454 |
S/G/Y/R/B/O |
NT_037887 | AC120498 | 1199852 | 3 |   |   | AL031703 | 1178722 | | 34603 | 0 | 0 | 34603 |
S/G/Y/R/B/O |
NT_037887 | AC120498 | 1199852 | 3 |   |   | AL031711 | 1178722 | | 39831 | 0 | 0 | 39831 |
S/G/Y/R/B/O |
NT_037887 | AC120498 | 1199852 | 3 |   |   | AL031712 | 1178722 | | 37267 | 0 | 0 | 37267 |
S/G/Y/R/B/O |
NT_037887 | AL031714 | 1378279 | 3 | chr16 | NT_037887 | AL031709 | 1399012 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL031709 | 1399012 | 3 | chr16 | NT_037887 | AL031721 | 1436388 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037887 | AL031721 | 1436388 | 3 | chr16 | NT_037887 | AL032819 | 1472943 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_037887 | AL032819 | 1472943 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_037887 | AL032819 | 1472943 | 3 |   |   | AC096995 | 1472943 | | 33603 | 0 | 0 | 33603 |
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