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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010478 | AC132186 | 66740029 | 2 | chr16 | NT_010478 | AC010289 | 66874261 | 3 | 23170 | 0 | 0 | 23170 |
S/G/Y/R/B/O |
NT_010478 | AC132186 | 66740029 | 2 | chr16 | NT_010546 | AC012325 | 66537819 | 3 | 110430 | 0 | 0 | 110430 |
S/G/Y/R/B/O |
NT_010478 | AC132186 | 66740029 | 2 |   |   | AC004787 | 66740029 | | 29165 | 0 | 0 | 29165 |
S/G/Y/R/B/O |
NT_010478 | AC010289 | 66874261 | 3 | chr16 | NT_010478 | AC010542 | 66971344 | 3 | 81294 | 0 | 0 | 81294 |
S/G/Y/R/B/O |
NT_010478 | AC010542 | 66971344 | 3 | chr16 | NT_010478 | AC018557 | 67004328 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010478 | AC010542 | 66971344 | 3 |   |   | AC018589 | 66874261 | | 77211 | 0 | 0 | 77211 |
S/G/Y/R/B/O |
NT_010478 | AC018557 | 67004328 | 3 | chr16 | NT_010478 | AC044802 | 67154067 | 3 | 11395 | 0 | 0 | 11395 |
S/G/Y/R/B/O |
NT_010478 | AC018557 | 67004328 | 3 |   |   | AC018589 | 66740029 | | 91245 | 2087 | 12222 | 105554 |
S/G/Y/R/B/O |
NT_010478 | AC044802 | 67154067 | 3 | chr16 | NT_010478 | AC027131 | 67313004 | 3 | 99754 | 0 | 0 | 99754 |
S/G/Y/R/B/O |
NT_010478 | AC044802 | 67154067 | 3 | chr16 | NT_010478 | AC009084 | 67419147 | 3 | 16196 | 0 | 0 | 16196 |
S/G/Y/R/B/O |
NT_010478 | AC044802 | 67154067 | 3 |   |   | AC004638 | 67154067 | | 124629 | 0 | 0 | 124629 |
S/G/Y/R/B/O |
NT_010478 | AC044802 | 67154067 | 3 |   |   | AC026397 | 67004328 | | 124630 | 0 | 0 | 124630 |
S/G/Y/R/B/O |
NT_010478 | AC044802 | 67154067 | 3 |   |   | AC026399 | 67004328 | | 67193 | 0 | 0 | 67193 |
S/G/Y/R/B/O |
NT_010478 | AC027131 | 67313004 | 3 | chr16 | NT_010478 | AC009084 | 67419147 | 3 | 122343 | 0 | 0 | 122343 |
S/G/Y/R/B/O |
NT_010478 | AC027131 | 67313004 | 3 |   |   | AC004638 | 67313004 | | 80072 | 0 | 0 | 80072 |
S/G/Y/R/B/O |
NT_010478 | AC027131 | 67313004 | 3 |   |   | AC026397 | 67419147 | | 80074 | 0 | 0 | 80074 |
S/G/Y/R/B/O |
NT_010478 | AC027131 | 67313004 | 3 |   |   | AC026399 | 67419147 | | 82229 | 0 | 0 | 82229 |
S/G/Y/R/B/O |
NT_010478 | AC009084 | 67419147 | 3 | chr16 | NT_010478 | AC074143 | 67480669 | 3 | 0 | 0 | 37322 | 37322 |
S/G/Y/R/B/O |
NT_010478 | AC009084 | 67419147 | 3 | chr16 | NT_010478 | AC044802 | 67154067 | 3 | 16196 | 0 | 0 | 16196 |
S/G/Y/R/B/O |
NT_010478 | AC074143 | 67480669 | 3 | chr16 | NT_010478 | AC040160 | 67595974 | 3 | 55058 | 0 | 0 | 55058 |
S/G/Y/R/B/O |
NT_010478 | AC074143 | 67480669 | 3 |   |   | AC008594 | 67480669 | | 18555 | 0 | 0 | 18555 |
S/G/Y/R/B/O |
NT_010478 | AC040160 | 67595974 | 3 | chr16 | NT_010478 | AC009061 | 67750481 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010478 | AC040160 | 67595974 | 3 |   |   | AC008594 | 67595974 | | 39460 | 5298 | 48849 | 93607 |
S/G/Y/R/B/O |
NT_010478 | AC040160 | 67595974 | 3 |   |   | AC021091 | 67595974 | | 16243 | 2395 | 38075 | 56713 |
S/G/Y/R/B/O |
NT_010478 | AC009061 | 67750481 | 3 | chr16 | NT_010478 | AC027682 | 67820222 | 3 | 95642 | 0 | 0 | 95642 |
S/G/Y/R/B/O |
NT_010478 | AC009061 | 67750481 | 3 |   |   | AC021091 | 67480669 | | 170172 | 2395 | 0 | 172567 |
S/G/Y/R/B/O |
NT_010478 | AC027682 | 67820222 | 3 | chr16 | NT_010478 | AC009095 | 67983218 | 3 | 8295 | 0 | 0 | 8295 |
S/G/Y/R/B/O |
NT_010478 | AC027682 | 67820222 | 3 |   |   | AC021091 | 67983218 | | 68119 | 1376 | 0 | 69495 |
S/G/Y/R/B/O |
NT_010478 | AC009095 | 67983218 | 3 | chr16 | NT_010478 | AC010530 | 68020035 | 3 | 39054 | 0 | 0 | 39054 |
S/G/Y/R/B/O |
NT_010478 | AC010530 | 68020035 | 3 | chr16 | NT_010478 | AC040162 | 68213549 | 3 | 3486 | 0 | 0 | 3486 |
S/G/Y/R/B/O |
NT_010478 | AC040162 | 68213549 | 3 | chr16 | NT_010478 | AC130462 | 68427523 | 3 | 0 | 0 | 7249 | 7249 |
S/G/Y/R/B/O |
NT_010478 | AC040162 | 68213549 | 3 |   |   | AC009077 | 36431537 | | 96454 | 0 | 0 | 96454 |
S/G/Y/R/B/O |
NT_010478 | AC130462 | 68427523 | 3 | chr16 | NT_010478 | AC020978 | 68611766 | 3 | 23350 | 0 | 0 | 23350 |
S/G/Y/R/B/O |
NT_010478 | AC130462 | 68427523 | 3 |   |   | AC004531 | 68427523 | | 191327 | 0 | 0 | 191327 |
S/G/Y/R/B/O |
NT_010478 | AC020978 | 68611766 | 3 | chr16 | NT_010478 | AC099521 | 68752704 | 3 | 21215 | 0 | 0 | 21215 |
S/G/Y/R/B/O |
NT_010478 | AC020978 | 68611766 | 3 |   |   | AC004531 | 68213549 | | 23350 | 0 | 0 | 23350 |
S/G/Y/R/B/O |
NT_010478 | AC020978 | 68611766 | 3 |   |   | AC016927 | 68213549 | | 17913 | 2748 | 0 | 20661 |
S/G/Y/R/B/O |
NT_010478 | AC020978 | 68611766 | 3 |   |   | AC024903 | 68213549 | | 21214 | 0 | 0 | 21214 |
S/G/Y/R/B/O |
NT_010478 | AC099521 | 68752704 | 3 | chr16 | NT_010478 | AC009162 | 68898734 | 3 | 125791 | 0 | 0 | 125791 |
S/G/Y/R/B/O |
NT_010478 | AC099521 | 68752704 | 3 |   |   | AC009092 | 68427523 | | 33862 | 0 | 6178 | 40040 |
S/G/Y/R/B/O |
NT_010478 | AC099521 | 68752704 | 3 |   |   | AC016927 | 68898734 | | 56869 | 2748 | 104427 | 164044 |
S/G/Y/R/B/O |
NT_010478 | AC099521 | 68752704 | 3 |   |   | AC024903 | 68611766 | | 167238 | 0 | 0 | 167238 |
S/G/Y/R/B/O |
NT_010478 | AC009162 | 68898734 | 3 | chr16 | NT_010478 | AC126773 | 68954588 | 3 | 36617 | 0 | 0 | 36617 |
S/G/Y/R/B/O |
NT_010478 | AC009162 | 68898734 | 3 |   |   | AC009092 | 68611766 | | 62311 | 2053 | 15373 | 79737 |
S/G/Y/R/B/O |
NT_010478 | AC009162 | 68898734 | 3 |   |   | AC016927 | 68611766 | | 38397 | 0 | 85097 | 123494 |
S/G/Y/R/B/O |
NT_010478 | AC009162 | 68898734 | 3 |   |   | AC024903 | 68611766 | | 125791 | 0 | 0 | 125791 |
S/G/Y/R/B/O |
NT_010478 | AC009162 | 68898734 | 3 |   |   | AL139227 | 68954588 | | 36523 | 0 | 0 | 36523 |
S/G/Y/R/B/O |
NT_010478 | AC126773 | 68954588 | 3 | chr16 | NT_010478 | AC099314 | 69068082 | 3 | 46708 | 0 | 0 | 46708 |
S/G/Y/R/B/O |
NT_010478 | AC126773 | 68954588 | 3 |   |   | AC009092 | 68954588 | | 25698 | 5014 | 17340 | 48052 |
S/G/Y/R/B/O |
NT_010478 | AC126773 | 68954588 | 3 |   |   | AC074049 | 68898734 | | 11525 | 2020 | 54801 | 68346 |
S/G/Y/R/B/O |
NT_010478 | AC126773 | 68954588 | 3 |   |   | AL139227 | 11893658 | | 102441 | 0 | 2818 | 105259 |
S/G/Y/R/B/O |
NT_010478 | AC126773 | 68954588 | 3 |   |   | AP002024 | 11893658 | | 15122 | 911 | 0 | 16033 |
S/G/Y/R/B/O |
NT_010478 | AC099314 | 69068082 | 3 | chr16 | NT_010478 | AC009082 | 69253027 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010478 | AC099314 | 69068082 | 3 |   |   | AL139227 | 68954588 | | 46571 | 0 | 0 | 46571 |
S/G/Y/R/B/O |
NT_010478 | AC099314 | 69068082 | 3 |   |   | AP002024 | 68954588 | | 24588 | 0 | 28322 | 52910 |
S/G/Y/R/B/O |
NT_010478 | AC099314 | 69068082 | 3 |   |   | AP002025 | 68954588 | | 48385 | 0 | 0 | 48385 |
S/G/Y/R/B/O |
NT_010478 | AC009082 | 69253027 | 3 | chr16 | NT_010478 | AC009137 | 69299004 | 3 | 24489 | 0 | 0 | 24489 |
S/G/Y/R/B/O |
NT_010478 | AC009137 | 69299004 | 3 | chr16 | NT_010478 | AC009027 | 69449266 | 3 | 75694 | 0 | 0 | 75694 |
S/G/Y/R/B/O |
NT_010478 | AC009027 | 69449266 | 3 | chr16 | NT_010478 | AC009131 | 69551787 | 3 | 96295 | 0 | 0 | 96295 |
S/G/Y/R/B/O |
NT_010478 | AC009131 | 69551787 | 3 | chr16 | NT_010478 | AC026474 | 69636327 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010478 | AC009131 | 69551787 | 3 |   |   | AC108079 | 69449266 | | 23629 | 3176 | 28512 | 55317 |
S/G/Y/R/B/O |
NT_010478 | AC026474 | 69636327 | 3 | chr16 | NT_010478 | AC026464 | 69686517 | 3 | 143656 | 0 | 0 | 143656 |
S/G/Y/R/B/O |
NT_010478 | AC026474 | 69636327 | 3 |   |   | AC012040 | 69449266 | | 39459 | 0 | 32845 | 72304 |
S/G/Y/R/B/O |
NT_010478 | AC026464 | 69686517 | 3 | chr16 | NT_010478 | AC009032 | 69876702 | 3 | 16081 | 0 | 0 | 16081 |
S/G/Y/R/B/O |
NT_010478 | AC026464 | 69686517 | 3 |   |   | AC012040 | 69876702 | | 35137 | 0 | 32843 | 67980 |
S/G/Y/R/B/O |
NT_010478 | AC009032 | 69876702 | 3 | chr16 | NT_010478 | AC012321 | 70045132 | 3 | 59966 | 0 | 0 | 59966 |
S/G/Y/R/B/O |
NT_010478 | AC012321 | 70045132 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010478 | AC012321 | 70045132 | 3 | chr16 | NT_037896 | AC092115 | 70157437 | 3 | 32170 | 0 | 0 | 32170 |
S/G/Y/R/B/O |
NT_010478 | AC012321 | 70045132 | 3 | chr16 | NT_037896 | AC092115 | 70157437 | 3 | 32170 | 0 | 0 | 32170 |
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