|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010422 | AC024590 | 83214151 | 3 | chr16 | NT_010422 | AC098803 | 83394851 | 3 | 0 | 897 | 0 | 897 |
S/G/Y/R/B/O |
NT_010422 | AC024590 | 83214151 | 3 |   |   | AC005199 | 82938180 | | 37903 | 0 | 0 | 37903 |
S/G/Y/R/B/O |
NT_010422 | AC098803 | 83394851 | 3 | chr16 | NT_010422 | AC009117 | 83398465 | 3 | 0 | 1065 | 0 | 1065 |
S/G/Y/R/B/O |
NT_010422 | AC009117 | 83398465 | 3 | chr16 | NT_010422 | AC092351 | 83570266 | 3 | 0 | 0 | 40828 | 40828 |
S/G/Y/R/B/O |
NT_010422 | AC009117 | 83398465 | 3 |   |   | AC011656 | 90027890 | | 70823 | 1307 | 79051 | 151181 |
S/G/Y/R/B/O |
NT_010422 | AC092351 | 83570266 | 3 | chr16 | NT_010422 | AC099506 | 83687158 | 3 | 15793 | 0 | 0 | 15793 |
S/G/Y/R/B/O |
NT_010422 | AC092351 | 83570266 | 3 |   |   | AC011656 | 83398465 | | 11826 | 2088 | 11956 | 25870 |
S/G/Y/R/B/O |
NT_010422 | AC092351 | 83570266 | 3 |   |   | AC012424 | 83398465 | | 24611 | 38180 | 20125 | 82916 |
S/G/Y/R/B/O |
NT_010422 | AC092351 | 83570266 | 3 |   |   | AC021787 | 83398465 | | 15793 | 0 | 0 | 15793 |
S/G/Y/R/B/O |
NT_010422 | AC099506 | 83687158 | 3 | chr16 | NT_010422 | AC009028 | 83820089 | 3 | 37447 | 0 | 0 | 37447 |
S/G/Y/R/B/O |
NT_010422 | AC099506 | 83687158 | 3 |   |   | AC021787 | 83820089 | | 158981 | 0 | 3231 | 162212 |
S/G/Y/R/B/O |
NT_010422 | AC009028 | 83820089 | 3 | chr16 | NT_010422 | AC125793 | 83986360 | 3 | 68931 | 0 | 0 | 68931 |
S/G/Y/R/B/O |
NT_010422 | AC009028 | 83820089 | 3 |   |   | AC021787 | 83570266 | | 36718 | 0 | 0 | 36718 |
S/G/Y/R/B/O |
NT_010422 | AC125793 | 83986360 | 3 | chr16 | NT_010422 | AC098804 | 84031276 | 3 | 3707 | 0 | 0 | 3707 |
S/G/Y/R/B/O |
NT_010422 | AC098804 | 84031276 | 3 | chr16 | NT_010422 | AC087189 | 84092383 | 3 | 13418 | 0 | 0 | 13418 |
S/G/Y/R/B/O |
NT_010422 | AC087189 | 84092383 | 3 | chr16 | NT_010422 | AC009142 | 84263783 | 3 | 43284 | 0 | 0 | 43284 |
S/G/Y/R/B/O |
NT_010422 | AC009142 | 84263783 | 3 | chr16 | NT_010422 | AC092340 | 84416347 | 3 | 58220 | 0 | 0 | 58220 |
S/G/Y/R/B/O |
NT_010422 | AC092340 | 84416347 | 3 | chr16 | NT_010422 | AC106814 | 84504644 | 3 | 31386 | 0 | 0 | 31386 |
S/G/Y/R/B/O |
NT_010422 | AC106814 | 84504644 | 3 | chr16 | NT_010422 | AC009063 | 84643327 | 3 | 55566 | 0 | 0 | 55566 |
S/G/Y/R/B/O |
NT_010422 | AC009063 | 84643327 | 3 | chr16 | NT_010422 | AC009119 | 84781998 | 3 | 12886 | 0 | 0 | 12886 |
S/G/Y/R/B/O |
NT_010422 | AC009063 | 84643327 | 3 |   |   | AC009036 | 84416347 | | 75773 | 0 | 0 | 75773 |
S/G/Y/R/B/O |
NT_010422 | AC009063 | 84643327 | 3 |   |   | AC012320 | 84781998 | | 134242 | 0 | 0 | 134242 |
S/G/Y/R/B/O |
NT_010422 | AC009119 | 84781998 | 3 | chr16 | NT_010422 | AC040169 | 84950318 | 2 | 8221 | 0 | 0 | 8221 |
S/G/Y/R/B/O |
NT_010422 | AC009119 | 84781998 | 3 |   |   | AC009036 | 84504644 | | 130321 | 0 | 0 | 130321 |
S/G/Y/R/B/O |
NT_010422 | AC009119 | 84781998 | 3 |   |   | AC012320 | 84643327 | | 68314 | 0 | 0 | 68314 |
S/G/Y/R/B/O |
NT_010422 | AC040169 | 84950318 | 2 | chr16 | NT_010422 | AC009123 | 85140405 | 3 | 15968 | 0 | 0 | 15968 |
S/G/Y/R/B/O |
NT_010422 | AC009123 | 85140405 | 3 | chr16 | NT_010422 | AC010551 | 85337451 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010422 | AC010551 | 85337451 | 3 | chr16 | NT_010422 | AC022165 | 85356210 | 3 | 31413 | 0 | 0 | 31413 |
S/G/Y/R/B/O |
NT_010422 | AC022165 | 85356210 | 3 | chr16 | NT_010422 | AC092145 | 85569674 | 3 | 0 | 0 | 33645 | 33645 |
S/G/Y/R/B/O |
NT_010422 | AC022165 | 85356210 | 3 |   |   | AC010732 | 85337451 | | 94667 | 0 | 37293 | 131960 |
S/G/Y/R/B/O |
NT_010422 | AC022165 | 85356210 | 3 |   |   | AC019348 | 85337451 | | 36704 | 1876 | 8246 | 46826 |
S/G/Y/R/B/O |
NT_010422 | AC022165 | 85356210 | 3 |   |   | AC092320 | 85569674 | | 33181 | 0 | 9678 | 42859 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 | chr16 | NT_010422 | AC009116 | 85628308 | 3 | 20404 | 0 | 0 | 20404 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 |   |   | AC010732 | 85628308 | | 67840 | 0 | 15058 | 82898 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 |   |   | AC010732 | 85628308 | | 67840 | 0 | 15058 | 82898 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 |   |   | AC019348 | 85628308 | | 55702 | 7657 | 12321 | 75680 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 |   |   | AC019348 | 85628308 | | 55702 | 7657 | 12321 | 75680 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 |   |   | AC092320 | 85356210 | | 94414 | 0 | 16909 | 111323 |
S/G/Y/R/B/O |
NT_010422 | AC092145 | 85569674 | 3 |   |   | AC092320 | 85356210 | | 94414 | 0 | 16909 | 111323 |
S/G/Y/R/B/O |
NT_010422 | AC009116 | 85628308 | 3 | chr16 | NT_010422 | AC025280 | 85800841 | 3 | 34490 | 0 | 0 | 34490 |
S/G/Y/R/B/O |
NT_010422 | AC025280 | 85800841 | 3 | chr16 | NT_010422 | AC092341 | 85940991 | 3 | 88252 | 0 | 0 | 88252 |
S/G/Y/R/B/O |
NT_010422 | AC092341 | 85940991 | 3 | chr16 | NT_010422 | AC026469 | 85958581 | 3 | 73347 | 0 | 0 | 73347 |
S/G/Y/R/B/O |
NT_010422 | AC092341 | 85940991 | 3 |   |   | AC092347 | 85958581 | | 17930 | 0 | 84815 | 102745 |
S/G/Y/R/B/O |
NT_010422 | AC026469 | 85958581 | 3 | chr16 | NT_010422 | AC092275 | 86158250 | 2 | 16446 | 0 | 0 | 16446 |
S/G/Y/R/B/O |
NT_010422 | AC092275 | 86158250 | 2 | chr16 | NT_010422 | AC092377 | 86283656 | 3 | 54061 | 0 | 0 | 54061 |
S/G/Y/R/B/O |
NT_010422 | AC092275 | 86158250 | 2 |   |   | AC135777 | 86283656 | | 16867 | 0 | 0 | 16867 |
S/G/Y/R/B/O |
NT_010422 | AC092377 | 86283656 | 3 | chr16 | NT_010422 | AC135778 | 86491039 | 1 | 29579 | 0 | 53623 | 83202 |
S/G/Y/R/B/O |
NT_010422 | AC092377 | 86283656 | 3 | chr16 | NT_010422 | AC133540 | 86543802 | 3 | 10819 | 0 | 0 | 10819 |
S/G/Y/R/B/O |
NT_010422 | AC092377 | 86283656 | 3 |   |   | AC133541 | 86543802 | | 36148 | 0 | 0 | 36148 |
S/G/Y/R/B/O |
NT_010422 | AC092377 | 86283656 | 3 |   |   | AC135777 | 86543802 | | 41062 | 0 | 91873 | 132935 |
S/G/Y/R/B/O |
NT_010422 | AC092377 | 86283656 | 3 |   |   | AC135784 | 86491039 | | 67186 | 2030 | 55568 | 124784 |
S/G/Y/R/B/O |
NT_010422 | AC092377 | 86283656 | 3 |   |   | AC135787 | 86491039 | | 51243 | 0 | 78324 | 129567 |
S/G/Y/R/B/O |
NT_010422 | AC135778 | 86491039 | 1 | chr16 | NT_010422 | AC133540 | 86543802 | 3 | 20206 | 0 | 0 | 20206 |
S/G/Y/R/B/O |
NT_010422 | AC135778 | 86491039 | 1 |   |   | AC133541 | 86543802 | | 10175 | 0 | 22317 | 32492 |
S/G/Y/R/B/O |
NT_010422 | AC135778 | 86491039 | 1 |   |   | AC135777 | 86543802 | | 51192 | 0 | 30568 | 81760 |
S/G/Y/R/B/O |
NT_010422 | AC135778 | 86491039 | 1 |   |   | AC135784 | 86543802 | | 75068 | 2023 | 14627 | 91718 |
S/G/Y/R/B/O |
NT_010422 | AC135778 | 86491039 | 1 |   |   | AC135787 | 86543802 | | 23339 | 0 | 74829 | 98168 |
S/G/Y/R/B/O |
NT_010422 | AC133540 | 86543802 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010422 | AC133540 | 86543802 | 3 | chr16 | NT_010422 | AC092377 | 86283656 | 3 | 10819 | 0 | 0 | 10819 |
S/G/Y/R/B/O |
NT_010422 | AC133540 | 86543802 | 3 |   |   | AC135777 | 64858940 | | 12467 | 0 | 0 | 12467 |
S/G/Y/R/B/O |
NT_010422 | AC133540 | 86543802 | 3 |   |   | AC135784 | 86491039 | | 29120 | 0 | 0 | 29120 |
S/G/Y/R/B/O |
NT_010422 | AC133540 | 86543802 | 3 |   |   | AC135787 | 86491039 | | 29204 | 0 | 0 | 29204 |
| |
|
|
|