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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010542 | AC009113 | 90182039 | 3 | chr16 | NT_010542 | AC105409 | 90370346 | 2 | 58676 | 0 | 0 | 58676 |
S/G/Y/R/B/O |
NT_010542 | AC009113 | 90182039 | 3 |   |   | AC023256 | 12954620 | | 15412 | 0 | 8077 | 23489 |
S/G/Y/R/B/O |
NT_010542 | AC009113 | 90182039 | 3 |   |   | AC103890 | 12954620 | | 58676 | 0 | 0 | 58676 |
S/G/Y/R/B/O |
NT_010542 | AC105409 | 90370346 | 2 | chr16 | NT_010542 | AC092120 | 90429953 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010542 | AC105409 | 90370346 | 2 |   |   | AC009098 | 90370346 | | 23575 | 1467 | 52383 | 77425 |
S/G/Y/R/B/O |
NT_010542 | AC105409 | 90370346 | 2 |   |   | AC023256 | 90182039 | | 78673 | 2645 | 1569 | 82887 |
S/G/Y/R/B/O |
NT_010542 | AC092120 | 90429953 | 3 | chr16 | NT_010542 | AC092123 | 90545521 | 3 | 82895 | 0 | 0 | 82895 |
S/G/Y/R/B/O |
NT_010542 | AC092120 | 90429953 | 3 |   |   | AC009098 | 90182039 | | 25997 | 0 | 19523 | 45520 |
S/G/Y/R/B/O |
NT_010542 | AC092120 | 90429953 | 3 |   |   | AC023256 | 90182039 | | 28817 | 2265 | 3848 | 34930 |
S/G/Y/R/B/O |
NT_010542 | AC092123 | 90545521 | 3 | chr16 | NT_010542 | AC010538 | 90639433 | 2 | 10030 | 0 | 0 | 10030 |
S/G/Y/R/B/O |
NT_010542 | AC092123 | 90545521 | 3 |   |   | AC009098 | 90545521 | | 10135 | 0 | 7695 | 17830 |
S/G/Y/R/B/O |
NT_010542 | AC092123 | 90545521 | 3 |   |   | AC023256 | 90639433 | | 13901 | 2265 | 0 | 16166 |
S/G/Y/R/B/O |
NT_010542 | AC092123 | 90545521 | 3 |   |   | AC068559 | 90639433 | | 20199 | 0 | 25892 | 46091 |
S/G/Y/R/B/O |
NT_010542 | AC010538 | 90639433 | 2 | chr16 | NT_010542 | AC005360 | 90789728 | 3 | 7112 | 0 | 0 | 7112 |
S/G/Y/R/B/O |
NT_010542 | AC010538 | 90639433 | 2 |   |   | AC012300 | 90789728 | | 36318 | 2822 | 43894 | 83034 |
S/G/Y/R/B/O |
NT_010542 | AC010538 | 90639433 | 2 |   |   | AC068559 | 90789728 | | 68651 | 4371 | 47093 | 120115 |
S/G/Y/R/B/O |
NT_010542 | AC005360 | 90789728 | 3 | chr16 | NT_010542 | AC005567 | 90832908 | 3 | 9652 | 0 | 0 | 9652 |
S/G/Y/R/B/O |
NT_010542 | AC005567 | 90832908 | 3 | chr16 | NT_010542 | AC092385 | 90864329 | 3 | 4817 | 0 | 0 | 4817 |
S/G/Y/R/B/O |
NT_010542 | AC092385 | 90864329 | 3 | chr16 | NT_010542 | AC092143 | 90956725 | 3 | 28583 | 0 | 0 | 28583 |
S/G/Y/R/B/O |
NT_010542 | AC092385 | 90864329 | 3 |   |   | AC005565 | 90864329 | | 39424 | 0 | 0 | 39424 |
S/G/Y/R/B/O |
NT_010542 | AC092143 | 90956725 | 3 | chr16 | NT_010542 | AC133919 | 91111170 | 1 | 81184 | 0 | 0 | 81184 |
S/G/Y/R/B/O |
NT_010542 | AC092143 | 90956725 | 3 |   |   | AC006838 | 90956725 | | 38014 | 0 | 0 | 38014 |
S/G/Y/R/B/O |
NT_010542 | AC092143 | 90956725 | 3 |   |   | AC007181 | 90956725 | | 34917 | 0 | 0 | 34917 |
S/G/Y/R/B/O |
NT_010542 | AC092143 | 90956725 | 3 |   |   | AC008145 | 90956725 | | 37885 | 0 | 0 | 37885 |
S/G/Y/R/B/O |
NT_010542 | AC092143 | 90956725 | 3 |   |   | AC087250 | 90956725 | | 39292 | 0 | 0 | 39292 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 | chr7 | NT_029998 | AC097646 | 33144 | 3 | 14326 | 0 | 6260 | 20586 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 25417 | 0 | 10219 | 35636 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 | chr1 | NT_034471 | AL627309 | 366972 | 3 | 13627 | 2491 | 18225 | 34343 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 | chr1 | NT_034471 | AL669831 | 187305 | 3 | 28872 | 0 | 8569 | 37441 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 | chr1 | NT_034471 | AL732372 | 1 | 3 | 18282 | 2513 | 1170 | 21965 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 | chr1 | NT_034471 | AL732372 | 1 | 3 | 18282 | 2513 | 1170 | 21965 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   | AC006838 | 23084 | | 37394 | 0 | 0 | 37394 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   | AC007181 | 23084 | | 34941 | 0 | 0 | 34941 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   | AC087250 | 241897624 | | 10495 | 0 | 0 | 10495 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   | AC099546 | 167413 | | 10922 | 0 | 14553 | 25475 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   | AC133542 | 1 | | 27239 | 0 | 0 | 27239 |
S/G/Y/R/B/O |
NT_010542 | AC133919 | 91111170 | 1 |   |   | AL359496 | 45001 | | 18103 | 0 | 7536 | 25639 |
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