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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_010635 | AC092369 | 71458771 | 2 | chr16 | NT_010635 | AC109135 | 71696017 | 3 | 0 | 2584 | 5101 | 7685 |
S/G/Y/R/B/O |
NT_010635 | AC092369 | 71458771 | 2 | chr16 | NT_037896 | AC027281 | 71227558 | 3 | 74987 | 0 | 319 | 75306 |
S/G/Y/R/B/O |
NT_010635 | AC092369 | 71458771 | 2 |   |   | AL360154 | 71696017 | | 100776 | 11813 | 16015 | 128604 |
S/G/Y/R/B/O |
NT_010635 | AC092369 | 71458771 | 2 |   |   | AL590706 | 71696017 | | 71637 | 0 | 2528 | 74165 |
S/G/Y/R/B/O |
NT_010635 | AC109135 | 71696017 | 3 | chr16 | NT_010635 | AC130459 | 71871120 | 3 | 116333 | 0 | 0 | 116333 |
S/G/Y/R/B/O |
NT_010635 | AC109135 | 71696017 | 3 | chr16 | NT_037896 | AC027281 | 71227558 | 3 | 48763 | 0 | 0 | 48763 |
S/G/Y/R/B/O |
NT_010635 | AC109135 | 71696017 | 3 |   |   | AC004626 | 71696017 | | 116304 | 0 | 0 | 116304 |
S/G/Y/R/B/O |
NT_010635 | AC109135 | 71696017 | 3 |   |   | AC136634 | 71871120 | | 81746 | 1492 | 0 | 83238 |
S/G/Y/R/B/O |
NT_010635 | AC109135 | 71696017 | 3 |   |   | AL360154 | 71871120 | | 37438 | 0 | 2352 | 39790 |
S/G/Y/R/B/O |
NT_010635 | AC109135 | 71696017 | 3 |   |   | AL590706 | 71871120 | | 64031 | 0 | 0 | 64031 |
S/G/Y/R/B/O |
NT_010635 | AC130459 | 71871120 | 3 | chr16 | NT_010635 | AC099495 | 71906762 | 3 | 19120 | 0 | 0 | 19120 |
S/G/Y/R/B/O |
NT_010635 | AC130459 | 71871120 | 3 |   |   | AC004626 | 71871120 | | 157433 | 0 | 0 | 157433 |
S/G/Y/R/B/O |
NT_010635 | AC130459 | 71871120 | 3 |   |   | AC136634 | 71696017 | | 122680 | 0 | 1489 | 124169 |
S/G/Y/R/B/O |
NT_010635 | AC130459 | 71871120 | 3 |   |   | AL590706 | 71696017 | | 11969 | 0 | 0 | 11969 |
S/G/Y/R/B/O |
NT_010635 | AC099495 | 71906762 | 3 | chr16 | NT_010635 | AC106736 | 72053517 | 3 | 48743 | 0 | 0 | 48743 |
S/G/Y/R/B/O |
NT_010635 | AC099495 | 71906762 | 3 |   |   | AC003964 | 71696017 | | 117313 | 0 | 0 | 117313 |
S/G/Y/R/B/O |
NT_010635 | AC099495 | 71906762 | 3 |   |   | AC004626 | 71696017 | | 19120 | 0 | 0 | 19120 |
S/G/Y/R/B/O |
NT_010635 | AC099495 | 71906762 | 3 |   |   | AC009136 | 71696017 | | 105824 | 0 | 0 | 105824 |
S/G/Y/R/B/O |
NT_010635 | AC106736 | 72053517 | 3 | chr16 | NT_010635 | AC010547 | 72156979 | 3 | 5893 | 0 | 0 | 5893 |
S/G/Y/R/B/O |
NT_010635 | AC106736 | 72053517 | 3 |   |   | AC003964 | 71871120 | | 33172 | 0 | 0 | 33172 |
S/G/Y/R/B/O |
NT_010635 | AC106736 | 72053517 | 3 |   |   | AC009136 | 71871120 | | 119880 | 0 | 0 | 119880 |
S/G/Y/R/B/O |
NT_010635 | AC010547 | 72156979 | 3 | chr16 | NT_010635 | AC009097 | 72334314 | 3 | 38048 | 0 | 0 | 38048 |
S/G/Y/R/B/O |
NT_010635 | AC009097 | 72334314 | 3 | chr16 | NT_010635 | AC010653 | 72495695 | 3 | 60660 | 0 | 0 | 60660 |
S/G/Y/R/B/O |
NT_010635 | AC009097 | 72334314 | 3 |   |   | AL590137 | 72495695 | | 26327 | 16479 | 7178 | 49984 |
S/G/Y/R/B/O |
NT_010635 | AC010653 | 72495695 | 3 | chr16 | NT_010635 | AC009127 | 72596260 | 3 | 0 | 0 | 22894 | 22894 |
S/G/Y/R/B/O |
NT_010635 | AC010653 | 72495695 | 3 |   |   | AL590137 | 72596260 | | 21501 | 15435 | 19969 | 56905 |
S/G/Y/R/B/O |
NT_010635 | AC009127 | 72596260 | 3 | chr16 | NT_010635 | AC009087 | 72769482 | 3 | 69943 | 0 | 0 | 69943 |
S/G/Y/R/B/O |
NT_010635 | AC009087 | 72769482 | 3 | chr16 | NT_010635 | AC004682 | 72874472 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010635 | AC004682 | 72874472 | 3 | chr16 | NT_010635 | AC009075 | 73003837 | 3 | 54478 | 0 | 0 | 54478 |
S/G/Y/R/B/O |
NT_010635 | AC004682 | 72874472 | 3 |   |   | AC009160 | 73003837 | | 51064 | 2751 | 1546 | 55361 |
S/G/Y/R/B/O |
NT_010635 | AC009075 | 73003837 | 3 | chr16 | NT_010635 | AC004158 | 73139323 | 3 | 12110 | 0 | 0 | 12110 |
S/G/Y/R/B/O |
NT_010635 | AC009075 | 73003837 | 3 |   |   | AC012324 | 72874472 | | 91690 | 0 | 0 | 91690 |
S/G/Y/R/B/O |
NT_010635 | AC004158 | 73139323 | 3 | chr16 | NT_010635 | AC092289 | 73307757 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010635 | AC092289 | 73307757 | 3 | chr16 | NT_010635 | AC010748 | 73416059 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_010635 | AC092289 | 73307757 | 3 |   |   | AC010651 | 73003837 | | 47126 | 0 | 0 | 47126 |
S/G/Y/R/B/O |
NT_010635 | AC010748 | 73416059 | 3 | chr16 | NT_010635 | AC004943 | 73482454 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_010635 | AC004943 | 73482454 | 3 | chr16 | NT_010635 | AC132068 | 73623567 | 3 | 6495 | 0 | 0 | 6495 |
S/G/Y/R/B/O |
NT_010635 | AC132068 | 73623567 | 3 | chr16 | NT_010635 | AC002044 | 73633490 | 3 | 66595 | 0 | 0 | 66595 |
S/G/Y/R/B/O |
NT_010635 | AC002044 | 73633490 | 3 | chr16 | NT_010635 | AC116667 | 73851564 | 3 | 42112 | 0 | 0 | 42112 |
S/G/Y/R/B/O |
NT_010635 | AC002044 | 73633490 | 3 |   |   | AC008757 | 73482454 | | 33980 | 0 | 0 | 33980 |
S/G/Y/R/B/O |
NT_010635 | AC116667 | 73851564 | 3 | chr16 | NT_010635 | AC135780 | 73964010 | 3 | 111578 | 0 | 0 | 111578 |
S/G/Y/R/B/O |
NT_010635 | AC116667 | 73851564 | 3 |   |   | AC008757 | 73633490 | | 56021 | 0 | 0 | 56021 |
S/G/Y/R/B/O |
NT_010635 | AC135780 | 73964010 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_010635 | AC135780 | 73964010 | 3 |   |   | AC008757 | 73964010 | | 21280 | 0 | 0 | 21280 |
S/G/Y/R/B/O |
NT_010635 | AC135780 | 73964010 | 3 |   |   | AC008757 | 73964010 | | 21280 | 0 | 0 | 21280 |
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