|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_037890 | AC092137 | 19852720 | 1 | chr16 | NT_037890 | AC126763 | 19868901 | 3 | 24715 | 1554 | 12431 | 38700 |
S/G/Y/R/B/O |
NT_037890 | AC092137 | 19852720 | 1 | chr16 | NT_037890 | AC136026 | 20076149 | 2 | 48385 | 4619 | 12975 | 65979 |
S/G/Y/R/B/O |
NT_037890 | AC092137 | 19852720 | 1 |   |   | AC040158 | 14630373 | | 27928 | 2387 | 30524 | 60839 |
S/G/Y/R/B/O |
NT_037890 | AC092137 | 19852720 | 1 |   |   | AC136442 | 14593828 | | 91509 | 6174 | 40109 | 137792 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_037890 | AC136026 | 20076149 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_010393 | AC002045 | 17654135 | 3 | 62503 | 0 | 0 | 62503 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_010393 | AC002045 | 17654135 | 3 | 62503 | 0 | 0 | 62503 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_010393 | AC008785 | 15844271 | 3 | 139420 | 0 | 0 | 139420 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_010393 | AC008785 | 15844271 | 3 | 139420 | 0 | 0 | 139420 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_010393 | AC027275 | 17623780 | 3 | 90795 | 0 | 0 | 90795 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 | chr16 | NT_010393 | AC027275 | 17623780 | 3 | 90795 | 0 | 0 | 90795 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC005136 | 17654135 | | 22715 | 0 | 266 | 22981 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC005136 | 17654135 | | 22715 | 0 | 266 | 22981 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC040158 | 17623780 | | 13237 | 0 | 0 | 13237 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC040158 | 17623780 | | 13237 | 0 | 0 | 13237 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC135593 | 18072584 | | 76772 | 0 | 0 | 76772 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC135593 | 18072584 | | 76772 | 0 | 0 | 76772 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC136431 | 14593828 | | 13063 | 0 | 0 | 13063 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC136431 | 14593828 | | 13063 | 0 | 0 | 13063 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC136442 | 14593828 | | 78626 | 0 | 0 | 78626 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC136442 | 14593828 | | 78626 | 0 | 0 | 78626 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC136443 | 14593828 | | 22821 | 0 | 0 | 22821 |
S/G/Y/R/B/O |
NT_037890 | AC126763 | 19868901 | 3 |   |   | AC136443 | 14593828 | | 22821 | 0 | 0 | 22821 |
S/G/Y/R/B/O |
NT_037890 | AC136026 | 20076149 | 2 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_037890 | AC136026 | 20076149 | 2 | chr16 | NT_037890 | AC092137 | 19852720 | 1 | 48385 | 4619 | 12975 | 65979 |
S/G/Y/R/B/O |
NT_037890 | AC136026 | 20076149 | 2 | chr16 | NT_010393 | AC136427 | 14593828 | 2 | 48649 | 0 | 0 | 48649 |
S/G/Y/R/B/O |
NT_037890 | AC136026 | 20076149 | 2 |   |   | AC136442 | 14593828 | | 18275 | 0 | 59911 | 78186 |
| |
|
|
|