|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_019609 | AC092127 | 86599497 | 2 | chr16 | NT_019609 | AC123908 | 86649882 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_019609 | AC123908 | 86649882 | 3 | chr16 | NT_019609 | AC009068 | 86695010 | 3 | 139654 | 0 | 0 | 139654 |
S/G/Y/R/B/O |
NT_019609 | AC123908 | 86649882 | 3 | chr16 | NT_019609 | AC018695 | 86814793 | 3 | 78076 | 0 | 0 | 78076 |
S/G/Y/R/B/O |
NT_019609 | AC009068 | 86695010 | 3 | chr16 | NT_019609 | AC018695 | 86814793 | 3 | 98200 | 0 | 0 | 98200 |
S/G/Y/R/B/O |
NT_019609 | AC018695 | 86814793 | 3 | chr16 | NT_019609 | AC092723 | 86967856 | 3 | 18059 | 0 | 0 | 18059 |
S/G/Y/R/B/O |
NT_019609 | AC018695 | 86814793 | 3 | chr16 | NT_019609 | AC123908 | 86649882 | 3 | 78076 | 0 | 0 | 78076 |
S/G/Y/R/B/O |
NT_019609 | AC018695 | 86814793 | 3 |   |   | AC025286 | 86695010 | | 79310 | 0 | 0 | 79310 |
S/G/Y/R/B/O |
NT_019609 | AC092723 | 86967856 | 3 | chr16 | NT_019609 | AC135012 | 87138062 | 2 | 46866 | 0 | 0 | 46866 |
S/G/Y/R/B/O |
NT_019609 | AC092723 | 86967856 | 3 |   |   | AC025286 | 86814793 | | 65783 | 0 | 0 | 65783 |
S/G/Y/R/B/O |
NT_019609 | AC135012 | 87138062 | 2 | chr16 | NT_019609 | AC040170 | 87224485 | 3 | 63471 | 0 | 0 | 63471 |
S/G/Y/R/B/O |
NT_019609 | AC135012 | 87138062 | 2 |   |   | AC013513 | 87138062 | | 52835 | 2180 | 7983 | 62998 |
S/G/Y/R/B/O |
NT_019609 | AC135012 | 87138062 | 2 |   |   | AC025977 | 87138062 | | 67030 | 5412 | 34111 | 106553 |
S/G/Y/R/B/O |
NT_019609 | AC040170 | 87224485 | 3 | chr16 | NT_019609 | AC092327 | 87397497 | 3 | 79181 | 0 | 0 | 79181 |
S/G/Y/R/B/O |
NT_019609 | AC040170 | 87224485 | 3 |   |   | AC013513 | 110849658 | | 108136 | 5014 | 30337 | 143487 |
S/G/Y/R/B/O |
NT_019609 | AC040170 | 87224485 | 3 |   |   | AC025977 | 110849658 | | 43518 | 1579 | 59229 | 104326 |
S/G/Y/R/B/O |
NT_019609 | AC092327 | 87397497 | 3 | chr16 | NT_019609 | AC125792 | 87508073 | 3 | 0 | 0 | 20027 | 20027 |
S/G/Y/R/B/O |
NT_019609 | AC092327 | 87397497 | 3 |   |   | AC013513 | 87138062 | | 40038 | 4917 | 23417 | 68372 |
S/G/Y/R/B/O |
NT_019609 | AC092327 | 87397497 | 3 |   |   | AC025977 | 87138062 | | 11638 | 0 | 1741 | 13379 |
S/G/Y/R/B/O |
NT_019609 | AC125792 | 87508073 | 3 | chr16 | NT_019609 | AC009108 | 87541739 | 3 | 22346 | 0 | 0 | 22346 |
S/G/Y/R/B/O |
NT_019609 | AC009108 | 87541739 | 3 | chr16 | NT_019609 | AC009154 | 87686404 | 3 | 23991 | 0 | 0 | 23991 |
S/G/Y/R/B/O |
NT_019609 | AC009108 | 87541739 | 3 |   |   | AC016219 | 87686404 | | 45029 | 0 | 0 | 45029 |
S/G/Y/R/B/O |
NT_019609 | AC009108 | 87541739 | 3 |   |   | AC016219 | 87686404 | | 45029 | 0 | 0 | 45029 |
S/G/Y/R/B/O |
NT_019609 | AC009108 | 87541739 | 3 |   |   | AC024591 | 87686404 | | 33708 | 0 | 0 | 33708 |
S/G/Y/R/B/O |
NT_019609 | AC009108 | 87541739 | 3 |   |   | AC024591 | 87686404 | | 33708 | 0 | 0 | 33708 |
S/G/Y/R/B/O |
NT_019609 | AC009154 | 87686404 | 3 | chr16 | NT_019609 | AC130467 | 87868318 | 3 | 98101 | 0 | 0 | 98101 |
S/G/Y/R/B/O |
NT_019609 | AC009154 | 87686404 | 3 |   |   | AC016219 | 87541739 | | 76612 | 9288 | 5233 | 91133 |
S/G/Y/R/B/O |
NT_019609 | AC130467 | 87868318 | 3 | chr16 | NT_019609 | AC093519 | 87887503 | 3 | 12779 | 0 | 0 | 12779 |
S/G/Y/R/B/O |
NT_019609 | AC130467 | 87868318 | 3 |   |   | AC016219 | 87686404 | | 56158 | 4208 | 1202 | 61568 |
S/G/Y/R/B/O |
NT_019609 | AC130467 | 87868318 | 3 |   |   | AC016219 | 87686404 | | 56158 | 4208 | 1202 | 61568 |
S/G/Y/R/B/O |
NT_019609 | AC093519 | 87887503 | 3 | chr16 | NT_019609 | AC106745 | 88010017 | 3 | 29728 | 0 | 0 | 29728 |
S/G/Y/R/B/O |
NT_019609 | AC106745 | 88010017 | 3 | chr16 | NT_019609 | AC136285 | 88174257 | 1 | 80848 | 0 | 0 | 80848 |
S/G/Y/R/B/O |
NT_019609 | AC106745 | 88010017 | 3 |   |   | AC009050 | 87868318 | | 49595 | 7318 | 32324 | 89237 |
S/G/Y/R/B/O |
NT_019609 | AC106745 | 88010017 | 3 |   |   | AC009051 | 87868318 | | 100326 | 0 | 0 | 100326 |
S/G/Y/R/B/O |
NT_019609 | AC106745 | 88010017 | 3 |   |   | AC092726 | 87868318 | | 91859 | 0 | 0 | 91859 |
S/G/Y/R/B/O |
NT_019609 | AC136285 | 88174257 | 1 | chr16 | NT_019609 | AC010531 | 88304848 | 3 | 21734 | 0 | 0 | 21734 |
S/G/Y/R/B/O |
NT_019609 | AC136285 | 88174257 | 1 |   |   | AC009050 | 88174257 | | 85556 | 6449 | 47441 | 139446 |
S/G/Y/R/B/O |
NT_019609 | AC136285 | 88174257 | 1 |   |   | AC009051 | 88174257 | | 138196 | 0 | 0 | 138196 |
S/G/Y/R/B/O |
NT_019609 | AC136285 | 88174257 | 1 |   |   | AC084815 | 88304848 | | 72674 | 15494 | 31882 | 120050 |
S/G/Y/R/B/O |
NT_019609 | AC136285 | 88174257 | 1 |   |   | AC092726 | 88304848 | | 144538 | 0 | 0 | 144538 |
S/G/Y/R/B/O |
NT_019609 | AC136285 | 88174257 | 1 |   |   | AC135786 | 88010017 | | 36067 | 1609 | 0 | 37676 |
S/G/Y/R/B/O |
NT_019609 | AC010531 | 88304848 | 3 | chr16 | NT_019609 | AC105429 | 88479902 | 3 | 0 | 0 | 101062 | 101062 |
S/G/Y/R/B/O |
NT_019609 | AC010531 | 88304848 | 3 |   |   | AC084815 | 88010017 | | 23947 | 0 | 8841 | 32788 |
S/G/Y/R/B/O |
NT_019609 | AC010531 | 88304848 | 3 |   |   | AC103885 | 88010017 | | 49066 | 0 | 0 | 49066 |
S/G/Y/R/B/O |
NT_019609 | AC105429 | 88479902 | 3 | chr16 | NT_019609 | AC092720 | 88539187 | 3 | 5152 | 0 | 0 | 5152 |
S/G/Y/R/B/O |
NT_019609 | AC105429 | 88479902 | 3 |   |   | AC103885 | 88539187 | | 74958 | 0 | 0 | 74958 |
S/G/Y/R/B/O |
NT_019609 | AC092720 | 88539187 | 3 | chr16 | NT_019609 | AC010536 | 88679576 | 3 | 73860 | 0 | 0 | 73860 |
S/G/Y/R/B/O |
NT_019609 | AC092720 | 88539187 | 3 |   |   | AC093622 | 88679576 | | 41332 | 6255 | 38243 | 85830 |
S/G/Y/R/B/O |
NT_019609 | AC010536 | 88679576 | 3 | chr16 | NT_019609 | AC126696 | 88837509 | 3 | 7727 | 0 | 0 | 7727 |
S/G/Y/R/B/O |
NT_019609 | AC010536 | 88679576 | 3 |   |   | AC009752 | 88479902 | | 29738 | 0 | 0 | 29738 |
S/G/Y/R/B/O |
NT_019609 | AC010536 | 88679576 | 3 |   |   | AC093622 | 88539187 | | 62961 | 5336 | 63175 | 131472 |
S/G/Y/R/B/O |
NT_019609 | AC010536 | 88679576 | 3 |   |   | AC103889 | 88539187 | | 131329 | 0 | 0 | 131329 |
S/G/Y/R/B/O |
NT_019609 | AC126696 | 88837509 | 3 | chr16 | NT_019609 | AC133539 | 88938486 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_019609 | AC133539 | 88938486 | 3 | chr16 | NT_019609 | AC127455 | 88973730 | 2 | 44287 | 0 | 0 | 44287 |
S/G/Y/R/B/O |
NT_019609 | AC133539 | 88938486 | 3 |   |   | AC134308 | 88973730 | | 67538 | 0 | 0 | 67538 |
S/G/Y/R/B/O |
NT_019609 | AC127455 | 88973730 | 2 | chr16 | NT_019609 | AC134312 | 89116548 | 2 | 73359 | 0 | 0 | 73359 |
S/G/Y/R/B/O |
NT_019609 | AC127455 | 88973730 | 2 |   |   | AC134308 | 88938486 | | 141577 | 0 | 25718 | 167295 |
S/G/Y/R/B/O |
NT_019609 | AC134312 | 89116548 | 2 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_019609 | AC134312 | 89116548 | 2 |   |   | AC134308 | 88973730 | | 59046 | 0 | 0 | 59046 |
S/G/Y/R/B/O |
NT_019609 | AC134312 | 89116548 | 2 |   |   | AC134308 | 88973730 | | 59046 | 0 | 0 | 59046 |
| |
|
|
|