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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 | chr16 | NT_035382 | AC133536 | 33005418 | 1 | 68119 | 1571 | 16138 | 85828 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 | chr16 | NT_035382 | AC007882 | 33076718 | 3 | 14678 | 2953 | 0 | 17631 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 | chr16 | NT_024779 | AC009057 | 34449863 | 3 | 119689 | 1934 | 0 | 121623 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 | chr16 | NT_035382 | AC010539 | 33021678 | 3 | 49066 | 2937 | 0 | 52003 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 | chr16 | NT_024779 | AC133561 | 34583440 | 2 | 83499 | 1934 | 21082 | 106515 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 | chr16 | NT_037892 | AC136425 | 33507196 | 2 | 15749 | 2811 | 0 | 18560 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC002041 | 32829517 | | 83056 | 2959 | 0 | 86015 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC004529 | 32829517 | | 10451 | 1931 | 58517 | 70899 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC007908 | 33076718 | | 20671 | 2185 | 1848 | 24704 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC133564 | 34583440 | | 12462 | 4992 | 3022 | 20476 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC136439 | 33507196 | | 39828 | 4907 | 3987 | 48722 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC136445 | 33507196 | | 106634 | 1935 | 0 | 108569 |
S/G/Y/R/B/O |
NT_035382 | AC136440 | 32829517 | 2 |   |   | AC136616 | 33507196 | | 86124 | 1947 | 43275 | 131346 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_035382 | AC010539 | 33021678 | 3 | 73820 | 0 | 54441 | 128261 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_024812 | AC006352 | 32563158 | 3 | 37887 | 0 | 0 | 37887 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_035382 | AC007882 | 33076718 | 3 | 130753 | 0 | 1411 | 132164 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_024779 | AC009057 | 34449863 | 3 | 18691 | 0 | 47157 | 65848 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_024812 | AC133485 | 32668460 | 3 | 115766 | 0 | 0 | 115766 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_024779 | AC133561 | 34583440 | 2 | 60447 | 0 | 14413 | 74860 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 | chr16 | NT_037892 | AC136425 | 33507196 | 2 | 129350 | 0 | 0 | 129350 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC002041 | 33507196 | | 181057 | 0 | 19436 | 200493 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC007908 | 33076718 | | 94570 | 6221 | 29562 | 130353 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC133564 | 34583440 | | 129343 | 2125 | 0 | 131468 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC136439 | 33507196 | | 113092 | 2842 | 14929 | 130863 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC136445 | 32829517 | | 18134 | 0 | 34457 | 52591 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC136608 | 32829517 | | 113644 | 0 | 476 | 114120 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC136613 | 32829517 | | 90776 | 0 | 10181 | 100957 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC136616 | 32829517 | | 21419 | 0 | 56909 | 78328 |
S/G/Y/R/B/O |
NT_035382 | AC133536 | 33005418 | 1 |   |   | AC136620 | 32829517 | | 17667 | 0 | 0 | 17667 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 | chr16 | NT_035382 | AC007882 | 33076718 | 3 | 118101 | 0 | 0 | 118101 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 | chr16 | NT_024779 | AC133561 | 34583440 | 2 | 42135 | 0 | 0 | 42135 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 | chr16 | NT_037892 | AC136425 | 33507196 | 2 | 87987 | 0 | 0 | 87987 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 | chr16 | NT_035382 | AC136440 | 32829517 | 2 | 49066 | 2937 | 0 | 52003 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC002041 | 32829517 | | 149009 | 0 | 0 | 149009 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC007908 | 33076718 | | 79821 | 8357 | 17041 | 105219 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC133564 | 34583440 | | 83675 | 2121 | 3130 | 88926 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC136439 | 33507196 | | 104400 | 4709 | 2155 | 111264 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC136445 | 32829517 | | 32831 | 0 | 0 | 32831 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC136608 | 32829517 | | 51232 | 0 | 0 | 51232 |
S/G/Y/R/B/O |
NT_035382 | AC010539 | 33021678 | 3 |   |   | AC136613 | 32829517 | | 14950 | 0 | 0 | 14950 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 | chr16 | NT_035382 | U91320 | 33281697 | 3 | 44422 | 0 | 0 | 44422 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 | chr16 | NT_035382 | AC133536 | 33005418 | 1 | 130753 | 0 | 1411 | 132164 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 | chr16 | NT_037892 | AC136425 | 33507196 | 2 | 170395 | 0 | 0 | 170395 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 | chr16 | NT_035382 | AC136440 | 32829517 | 2 | 14678 | 2953 | 0 | 17631 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC002041 | 32829517 | | 165723 | 0 | 0 | 165723 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC007908 | 32829517 | | 128315 | 5175 | 70347 | 203837 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC133564 | 34583440 | | 157411 | 3851 | 0 | 161262 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC133569 | 34583440 | | 37435 | 0 | 14761 | 52196 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC136439 | 33507196 | | 83778 | 2844 | 0 | 86622 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC136608 | 32829517 | | 114884 | 0 | 0 | 114884 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC136612 | 32829517 | | 47375 | 0 | 880 | 48255 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC136616 | 32829517 | | 11178 | 0 | 0 | 11178 |
S/G/Y/R/B/O |
NT_035382 | AC007882 | 33076718 | 3 |   |   | AC136620 | 32829517 | | 11957 | 0 | 47928 | 59885 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 | chr16 | NT_035382 | AC027354 | 33314490 | 3 | 0 | 0 | 17596 | 17596 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 | chr16 | NT_037892 | AC114938 | 33679884 | 3 | 40522 | 0 | 0 | 40522 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 | chr16 | NT_037892 | AC114938 | 33679884 | 3 | 40522 | 0 | 0 | 40522 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 | chr16 | NT_037893 | AC133551 | 34834934 | 1 | 12032 | 0 | 0 | 12032 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 | chr16 | NT_037892 | AC136425 | 33507196 | 2 | 37274 | 0 | 0 | 37274 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 |   |   | AC007908 | 33076718 | | 41242 | 0 | 2805 | 44047 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 |   |   | AC133564 | 34834934 | | 45691 | 0 | 0 | 45691 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 |   |   | AC133569 | 34834934 | | 53150 | 0 | 12836 | 65986 |
S/G/Y/R/B/O |
NT_035382 | U91320 | 33281697 | 3 |   |   | AC136612 | 33507196 | | 67950 | 0 | 1138 | 69088 |
S/G/Y/R/B/O |
NT_035382 | AC027354 | 33314490 | 3 |   |   |   |   |   |   |   |   |   |
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