Chromosome 16 - Clone Overlaps

Chromosome 16 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037887	NT_010552	NT_037888	NT_037889	NT_010393	NT_037890	NT_037891	NT_010441
NT_035386	NT_010604	NT_024802	NT_024812	NT_035382	NT_037892	NT_024779	NT_037893
NT_024773	NT_035363	NT_037894	NT_010505	NT_010498	NT_034001	NT_037895	NT_035364
NT_010546	NT_010478	NT_037896	NT_010635	NT_037897	NT_024797	NT_010422	NT_019609
NT_010404	NT_010542

NT_024797

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_024797	AC009033	74280456	3	chr16	NT_024797	AC009104	74439082	3	57683	0	0	57683
S/G/Y/R/B/O	NT_024797	AC009033	74280456	3			AC009125	74439082		80457	15951	28043	124451
S/G/Y/R/B/O	NT_024797	AC009033	74280456	3			AC135950	74439082		83631	0	0	83631
S/G/Y/R/B/O	NT_024797	AC009104	74439082	3	chr16	NT_024797	AC092114	74538861	3	58275	0	0	58275
S/G/Y/R/B/O	NT_024797	AC009104	74439082	3			AC009125	74280456		29748	7287	14333	51368
S/G/Y/R/B/O	NT_024797	AC092114	74538861	3	chr16	NT_024797	AC092344	74572990	3	27711	0	0	27711
S/G/Y/R/B/O	NT_024797	AC092114	74538861	3			AC022636	74439082		26124	0	1151	27275
S/G/Y/R/B/O	NT_024797	AC092344	74572990	3	chr16	NT_024797	AC087565	74697914	3	22065	0	0	22065
S/G/Y/R/B/O	NT_024797	AC092344	74572990	3			AC022636	74572990		111739	13371	16159	141269
S/G/Y/R/B/O	NT_024797	AC087565	74697914	3	chr16	NT_024797	AC092128	74868823	3	67254	0	0	67254
S/G/Y/R/B/O	NT_024797	AC087565	74697914	3			AC022636	74538861		12522	3210	5559	21291
S/G/Y/R/B/O	NT_024797	AC087565	74697914	3			AC024978	74538861		140751	9618	1445	151814
S/G/Y/R/B/O	NT_024797	AC087565	74697914	3			AC046201	74538861		75559	11894	13905	101358
S/G/Y/R/B/O	NT_024797	AC092128	74868823	3	chr16	NT_024797	AC004605	75004291	3	62561	0	0	62561
S/G/Y/R/B/O	NT_024797	AC092128	74868823	3			AC024978	75004291		49951	5087	1445	56483
S/G/Y/R/B/O	NT_024797	AC092128	74868823	3			AC046201	75004291		46618	5997	11922	64537
S/G/Y/R/B/O	NT_024797	AC004605	75004291	3	chr16	NT_024797	AC009120	75175013	3	75891	0	0	75891
S/G/Y/R/B/O	NT_024797	AC004605	75004291	3			AC080184	75175013		77596	3760	18633	99989
S/G/Y/R/B/O	NT_024797	AC009120	75175013	3	chr16	NT_024797	AC009053	75320491	3	25214	0	0	25214
S/G/Y/R/B/O	NT_024797	AC009120	75175013	3			AC080184	75320491		24183	1607	8634	34424
S/G/Y/R/B/O	NT_024797	AC009053	75320491	3	chr16	NT_024797	AC009153	75458685	3	88500	0	0	88500
S/G/Y/R/B/O	NT_024797	AC009053	75320491	3			AC133545	75458685		23953	0	0	23953
S/G/Y/R/B/O	NT_024797	AC009153	75458685	3	chr16	NT_024797	AC109599	75547664	3	19376	0	0	19376
S/G/Y/R/B/O	NT_024797	AC009153	75458685	3			AC133545	75547664		23953	0	0	23953
S/G/Y/R/B/O	NT_024797	AC109599	75547664	3	chr16	NT_024797	AC004685	75694780	3	14932	0	0	14932
S/G/Y/R/B/O	NT_024797	AC109599	75547664	3	chr16	NT_037895	AC130461	64858940	1	14279	0	926	15205
S/G/Y/R/B/O	NT_024797	AC004685	75694780	3	chr16	NT_024797	AC009132	75792065	3	0	0	0	0
S/G/Y/R/B/O	NT_024797	AC009132	75792065	3	chr16	NT_024797	AC092383	75947769	3	50177	0	0	50177
S/G/Y/R/B/O	NT_024797	AC092383	75947769	3	chr16	NT_024797	AC099508	76001873	3	75339	0	0	75339
S/G/Y/R/B/O	NT_024797	AC099508	76001873	3	chr16	NT_024797	AC009078	76164163	3	69204	0	0	69204
S/G/Y/R/B/O	NT_024797	AC009078	76164163	3	chr16	NT_024797	AC009054	76271884	3	0	0	0	0
S/G/Y/R/B/O	NT_024797	AC009054	76271884	3	chr16	NT_024797	AC009163	76421472	3	0	0	0	0
S/G/Y/R/B/O	NT_024797	AC009054	76271884	3			AC009105	76001873		76516	0	0	76516
S/G/Y/R/B/O	NT_024797	AC009163	76421472	3	chr16	NT_024797	AC025287	76537394	3	20036	0	0	20036
S/G/Y/R/B/O	NT_024797	AC025287	76537394	3	chr16	NT_024797	AC009122	76712190	3	59643	0	0	59643
S/G/Y/R/B/O	NT_024797	AC025287	76537394	3			AC011934	76421472		117570	2690	16148	136408
S/G/Y/R/B/O	NT_024797	AC009122	76712190	3	chr16	NT_024797	AC105430	76823316	3	0	0	0	0
S/G/Y/R/B/O	NT_024797	AC009122	76712190	3			AC011934	76421472		29331	0	0	29331
S/G/Y/R/B/O	NT_024797	AC105430	76823316	3	chr16	NT_024797	AC092379	76952095	3	48668	0	0	48668
S/G/Y/R/B/O	NT_024797	AC092379	76952095	3	chr16	NT_024797	AC099511	77085749	3	0	0	62777	62777
S/G/Y/R/B/O	NT_024797	AC099511	77085749	3	chr16	NT_024797	AC009046	77196210	3	17574	0	0	17574
S/G/Y/R/B/O	NT_024797	AC099511	77085749	3			AC009071	77196210		42593	0	70266	112859
S/G/Y/R/B/O	NT_024797	AC099511	77085749	3			AC009157	77196210		30056	1645	0	31701
S/G/Y/R/B/O	NT_024797	AC099511	77085749	3			AC106737	76952095		12859	0	0	12859
S/G/Y/R/B/O	NT_024797	AC009046	77196210	3	chr16	NT_024797	AC010528	77332185	3	115885	0	0	115885
S/G/Y/R/B/O	NT_024797	AC009046	77196210	3			AC009071	76952095		23117	0	0	23117
S/G/Y/R/B/O	NT_024797	AC009046	77196210	3			AC084005	77332185		106233	2746	1806	110785
S/G/Y/R/B/O	NT_024797	AC009046	77196210	3			AC106737	77085749		48036	0	100471	148507
S/G/Y/R/B/O	NT_024797	AC010528	77332185	3	chr16	NT_024797	AC106741	77384395	3	6322	0	0	6322
S/G/Y/R/B/O	NT_024797	AC010528	77332185	3			AC084005	77196210		151551	2746	8400	162697
S/G/Y/R/B/O	NT_024797	AC010528	77332185	3			AC106737	77196210		49768	0	67649	117417
S/G/Y/R/B/O	NT_024797	AC010528	77332185	3			AC108133	77384395		12147	0	0	12147
S/G/Y/R/B/O	NT_024797	AC106741	77384395	3	chr16	NT_024797	AC108125	77554476	3	29840	0	0	29840
S/G/Y/R/B/O	NT_024797	AC106741	77384395	3			AC084005	77332185		29420	2798	591	32809
S/G/Y/R/B/O	NT_024797	AC106741	77384395	3			AC108133	77554476		106339	0	28366	134705
S/G/Y/R/B/O	NT_024797	AC108125	77554476	3	chr16	NT_024797	AC104151	77678387	3	40552	0	0	40552
S/G/Y/R/B/O	NT_024797	AC104151	77678387	3	chr16	NT_024797	AC130470	77783394	3	10055	0	0	10055
S/G/Y/R/B/O	NT_024797	AC130470	77783394	3	chr16	NT_024797	AC106729	77784709	3	5129	0	0	5129
S/G/Y/R/B/O	NT_024797	AC106729	77784709	3	chr16	NT_024797	AC106734	77882913	3	35386	0	0	35386
S/G/Y/R/B/O	NT_024797	AC106729	77784709	3			AC025846	77784709		36865	0	1430	38295
S/G/Y/R/B/O	NT_024797	AC106734	77882913	3	chr16	NT_024797	AC108132	77942277	3	14898	0	0	14898
S/G/Y/R/B/O	NT_024797	AC106734	77882913	3			AC025846	77783394		73231	11240	20707	105178
S/G/Y/R/B/O	NT_024797	AC108132	77942277	3	chr16	NT_024797	AC106733	78115475	3	50031	0	0	50031
S/G/Y/R/B/O	NT_024797	AC108132	77942277	3			AC023573	77942277		137286	1898	4064	143248
S/G/Y/R/B/O	NT_024797	AC108132	77942277	3			AC025846	77942277		65533	2714	3400	71647
S/G/Y/R/B/O	NT_024797	AC106733	78115475	3	chr16	NT_024797	AC009139	78163730	3	0	0	23680	23680
S/G/Y/R/B/O	NT_024797	AC106733	78115475	3			AC023573	78163730		72824	4686	6250	83760
S/G/Y/R/B/O	NT_024797	AC009139	78163730	3	chr16	NT_024797	AC010548	78220741	3	96821	0	0	96821
S/G/Y/R/B/O	NT_024797	AC009139	78163730	3			AC026498	78220741		11424	0	1146	12570
S/G/Y/R/B/O	NT_024797	AC010548	78220741	3	chr16	NT_024797	AC025284	78427216	3	11681	0	0	11681
S/G/Y/R/B/O	NT_024797	AC010548	78220741	3			AC026498	78427216		78770	17100	9513	105383
S/G/Y/R/B/O	NT_024797	AC025284	78427216	3	chr16	NT_024797	AC092724	78580136	3	23906	0	0	23906
S/G/Y/R/B/O	NT_024797	AC025284	78427216	3			AC021907	78220741		91820	2614	0	94434
S/G/Y/R/B/O	NT_024797	AC025284	78427216	3			AC023407	78220741		85697	3832	6650	96179
S/G/Y/R/B/O	NT_024797	AC025284	78427216	3			AC026498	78220741		34334	0	1387	35721
S/G/Y/R/B/O	NT_024797	AC092724	78580136	3	chr16	NT_024797	AC092134	78690953	3	41697	0	0	41697
S/G/Y/R/B/O	NT_024797	AC092724	78580136	3			AC021907	78580136		65526	2034	4470	72030
S/G/Y/R/B/O	NT_024797	AC092724	78580136	3			AC023407	78580136		51401	4180	27687	83268
S/G/Y/R/B/O	NT_024797	AC092134	78690953	3	chr16	NT_024797	AC010650	78850877	3	13728	0	0	13728
S/G/Y/R/B/O	NT_024797	AC092134	78690953	3			AC022105	78850877		20106	0	5834	25940
S/G/Y/R/B/O	NT_024797	AC010650	78850877	3	chr16	NT_024797	AC079414	79009483	3	19223	0	0	19223
S/G/Y/R/B/O	NT_024797	AC010650	78850877	3			AC022105	78580136		74397	2826	23576	100799
S/G/Y/R/B/O	NT_024797	AC079414	79009483	3	chr16	NT_024797	AC009044	79157259	3	85304	0	0	85304
S/G/Y/R/B/O	NT_024797	AC009044	79157259	3	chr16	NT_024797	AC106743	79239149	3	24762	0	0	24762
S/G/Y/R/B/O	NT_024797	AC106743	79239149	3	chr16	NT_024797	AC109134	79330633	3	3932	0	0	3932
S/G/Y/R/B/O	NT_024797	AC109134	79330633	3	chr16	NT_024797	AC046158	79473787	3	25569	0	0	25569
S/G/Y/R/B/O	NT_024797	AC046158	79473787	3	chr16	NT_024797	AC009141	79598476	2	2803	0	0	2803
S/G/Y/R/B/O	NT_024797	AC009141	79598476	2	chr16	NT_024797	AF179633	79781179	3	10179	0	3617	13796
S/G/Y/R/B/O	NT_024797	AC009141	79598476	2			AC136603	79473787		67674	0	3533	71207
S/G/Y/R/B/O	NT_024797	AF179633	79781179	3	chr16	NT_024797	AC027279	79877191	3	0	0	20203	20203
S/G/Y/R/B/O	NT_024797	AC027279	79877191	3	chr16	NT_024797	AC009145	80051482	3	0	0	47876	47876
S/G/Y/R/B/O	NT_024797	AC027279	79877191	3			AC136603	80051482		13809	0	0	13809
S/G/Y/R/B/O	NT_024797	AC009145	80051482	3	chr16	NT_024797	AC092376	80185576	3	2515	0	0	2515
S/G/Y/R/B/O	NT_024797	AC009145	80051482	3			AC009129	79781179		67037	4103	15610	86750
S/G/Y/R/B/O	NT_024797	AC092376	80185576	3	chr16	NT_024797	AC084064	80351139	2	9412	0	0	9412
S/G/Y/R/B/O	NT_024797	AC092376	80185576	3			AC009129	80185576		32394	7115	13036	52545
S/G/Y/R/B/O	NT_024797	AC084064	80351139	2	chr16	NT_024797	AC009159	80528506	3	4241	0	0	4241
S/G/Y/R/B/O	NT_024797	AC084064	80351139	2			AC009059	80351139		74044	0	6181	80225
S/G/Y/R/B/O	NT_024797	AC009159	80528506	3	chr16	NT_024797	AC087188	80694427	3	0	961	0	961
S/G/Y/R/B/O	NT_024797	AC009159	80528506	3			AC009059	80185576		93280	0	0	93280
S/G/Y/R/B/O	NT_024797	AC087188	80694427	3	chr16	NT_024797	AC113931	80811242	3	69948	0	0	69948
S/G/Y/R/B/O	NT_024797	AC113931	80811242	3	chr16	NT_024797	AC092130	80911708	3	18406	0	0	18406
S/G/Y/R/B/O	NT_024797	AC092130	80911708	3	chr16	NT_024797	AC022166	81063816	3	3068	0	0	3068
S/G/Y/R/B/O	NT_024797	AC022166	81063816	3	chr16	NT_024797	AC108483	81224746	3	50711	0	0	50711
S/G/Y/R/B/O	NT_024797	AC108483	81224746	3	chr16	NT_024797	AC105411	81338009	3	46178	0	0	46178
S/G/Y/R/B/O	NT_024797	AC108483	81224746	3			AC023250	81063816		40094	11740	0	51834
S/G/Y/R/B/O	NT_024797	AC108483	81224746	3			AC026986	81063816		38377	0	0	38377
S/G/Y/R/B/O	NT_024797	AC108483	81224746	3			AC068269	81063816		90640	8077	1120	99837
S/G/Y/R/B/O	NT_024797	AC105411	81338009	3	chr16	NT_024797	AC108097	81464516	3	32952	0	0	32952
S/G/Y/R/B/O	NT_024797	AC105411	81338009	3			AC023250	81338009		104829	23296	16761	144886
S/G/Y/R/B/O	NT_024797	AC105411	81338009	3			AC026986	81338009		154767	5253	1082	161102
S/G/Y/R/B/O	NT_024797	AC105411	81338009	3			AC068269	81338009		60881	3352	0	64233
S/G/Y/R/B/O	NT_024797	AC108097	81464516	3	chr16	NT_024797	AC092332	81612887	3	50985	0	0	50985
S/G/Y/R/B/O	NT_024797	AC108097	81464516	3			AC023250	81224746		13260	1747	1429	16436
S/G/Y/R/B/O	NT_024797	AC108097	81464516	3			AC026986	81224746		81095	0	0	81095
S/G/Y/R/B/O	NT_024797	AC092332	81612887	3	chr16	NT_024797	AC099313	81717435	3	41315	0	0	41315
S/G/Y/R/B/O	NT_024797	AC099313	81717435	3	chr16	NT_024797	AC009070	81788296	3	44948	0	0	44948
S/G/Y/R/B/O	NT_024797	AC099313	81717435	3			AC013398	81788296		24969	649	34023	59641
S/G/Y/R/B/O	NT_024797	AC009070	81788296	3	chr16	NT_024797	AC009079	81946453	3	0	0	78043	78043
S/G/Y/R/B/O	NT_024797	AC009070	81788296	3			AC013398	81946453		89831	0	10467	100298
S/G/Y/R/B/O	NT_024797	AC009079	81946453	3	chr16	NT_024797	AC092718	82068101	3	93814	0	0	93814
S/G/Y/R/B/O	NT_024797	AC092718	82068101	3	chr16	NT_024797	AC131888	82177213	3	59031	0	0	59031
S/G/Y/R/B/O	NT_024797	AC131888	82177213	3	chr16	NT_024797	AC009148	82278963	3	2155	0	0	2155
S/G/Y/R/B/O	NT_024797	AC009148	82278963	3	chr16	NT_024797	AC092139	82436480	3	90530	0	0	90530
S/G/Y/R/B/O	NT_024797	AC092139	82436480	3	chr16	NT_024797	AC092135	82537409	3	74486	0	0	74486
S/G/Y/R/B/O	NT_024797	AC092139	82436480	3			AC007411	82177213		21957	17113	7029	46099
S/G/Y/R/B/O	NT_024797	AC092135	82537409	3	chr16	NT_024797	AC099480	82647629	3	89778	0	0	89778
S/G/Y/R/B/O	NT_024797	AC092135	82537409	3			AC007411	82537409		30236	15006	4865	50107
S/G/Y/R/B/O	NT_024797	AC092135	82537409	3			AC099483	82647629		35855	1839	31199	68893
S/G/Y/R/B/O	NT_024797	AC099480	82647629	3	chr16	NT_024797	AC099524	82703827	3	7752	0	0	7752
S/G/Y/R/B/O	NT_024797	AC099480	82647629	3			AC009100	82647629		30106	0	0	30106
S/G/Y/R/B/O	NT_024797	AC099480	82647629	3			AC099483	82537409		45261	1839	16596	63696
S/G/Y/R/B/O	NT_024797	AC099524	82703827	3	chr16	NT_024797	AC098966	82883283	3	110027	0	0	110027
S/G/Y/R/B/O	NT_024797	AC098966	82883283	3	chr16	NT_024797	AC092142	82938180	3	22421	0	0	22421
S/G/Y/R/B/O	NT_024797	AC092142	82938180	3	chr16	NT_024797	AC009140	83092982	3	27928	0	0	27928
S/G/Y/R/B/O	NT_024797	AC092142	82938180	3			AC084796	83092982		27927	6851	22014	56792
S/G/Y/R/B/O	NT_024797	AC009140	83092982	3
S/G/Y/R/B/O	NT_024797	AC009140	83092982	3			AC084796	82883283		52545	0	0	52545