|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_025920 | AC008993 | 1 | 3 | chr19 | NT_025920 | AC008977 | 38562 | 3 | 5313 | 0 | 0 | 5313 |
S/G/Y/R/B/O |
NT_025920 | AC008993 | 1 | 3 | chr15 | NT_035325 | AC129907 | 96313085 | 3 | 24675 | 0 | 0 | 24675 |
S/G/Y/R/B/O |
NT_025920 | AC008993 | 1 | 3 | chr1 | NT_034471 | AL627309 | 366972 | 3 | 38459 | 0 | 0 | 38459 |
S/G/Y/R/B/O |
NT_025920 | AC008993 | 1 | 3 |   |   | AC005603 | 77654445 | | 14476 | 0 | 0 | 14476 |
S/G/Y/R/B/O |
NT_025920 | AC008993 | 1 | 3 |   |   | AC005604 | 77654445 | | 14027 | 0 | 0 | 14027 |
S/G/Y/R/B/O |
NT_025920 | AC008977 | 38562 | 3 | chr19 | NT_025920 | AC016626 | 73429 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025920 | AC008977 | 38562 | 3 |   |   | AC005604 | 1 | | 32231 | 0 | 0 | 32231 |
S/G/Y/R/B/O |
NT_025920 | AC016626 | 73429 | 3 | chr19 | NT_025920 | AC092192 | 101199 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025920 | AC016626 | 73429 | 3 | chr11 | NT_037764 | AC069287 | 50001 | 3 | 31528 | 0 | 0 | 31528 |
S/G/Y/R/B/O |
NT_025920 | AC016626 | 73429 | 3 |   |   | AC004842 | 45001 | | 27655 | 0 | 0 | 27655 |
S/G/Y/R/B/O |
NT_025920 | AC092192 | 101199 | 3 | chr19 | NT_025920 | AC092299 | 118522 | 3 | 11728 | 0 | 0 | 11728 |
S/G/Y/R/B/O |
NT_025920 | AC092192 | 101199 | 3 | chr5 | NT_037668 | AL161615 | 181483764 | 1 | 12724 | 0 | 0 | 12724 |
S/G/Y/R/B/O |
NT_025920 | AC092192 | 101199 | 3 | chr1 | NT_034471 | AL669831 | 187305 | 3 | 10052 | 0 | 0 | 10052 |
S/G/Y/R/B/O |
NT_025920 | AC092192 | 101199 | 3 |   |   | AC010509 | 50001 | | 12869 | 2079 | 0 | 14948 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr19 | NT_025920 | AC010507 | 146318 | 3 | 18870 | 0 | 0 | 18870 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr11 | NT_037764 | AC069287 | 50001 | 3 | 37373 | 0 | 0 | 37373 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr1 | NT_034471 | AC114498 | 153750 | 1 | 11660 | 0 | 0 | 11660 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 16417 | 2379 | 6888 | 25684 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr8 | NT_037693 | AC131281 | 1 | 2 | 18332 | 0 | 0 | 18332 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr8 | NT_037693 | AC131281 | 1 | 2 | 18332 | 0 | 0 | 18332 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr5 | NT_037668 | AL161615 | 181483764 | 1 | 10237 | 4039 | 5481 | 19757 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr1 | NT_034471 | AL669831 | 187305 | 3 | 35457 | 0 | 0 | 35457 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 37165 | 0 | 0 | 37165 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 37165 | 0 | 0 | 37165 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 |   |   | AC010509 | 146318 | | 14648 | 2079 | 1182 | 17909 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 |   |   | AC073135 | 50001 | | 21838 | 0 | 0 | 21838 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 |   |   | AC090118 | 241897624 | | 18866 | 0 | 0 | 18866 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 |   |   | AC127532 | 524206 | | 10000 | 0 | 0 | 10000 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 |   |   | AC127532 | 524206 | | 10000 | 0 | 0 | 10000 |
S/G/Y/R/B/O |
NT_025920 | AC092299 | 118522 | 3 |   |   | AL359496 | 45001 | | 24569 | 0 | 4669 | 29238 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr19 | NT_025920 | AC098474 | 167413 | 3 | 0 | 1442 | 0 | 1442 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr11 | NT_037764 | AC069287 | 50001 | 3 | 38168 | 0 | 0 | 38168 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr11 | NT_037764 | AC069287 | 50001 | 3 | 38168 | 0 | 0 | 38168 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr7 | NT_029998 | AC097645 | 22221 | 3 | 33465 | 0 | 0 | 33465 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr7 | NT_029998 | AC097645 | 22221 | 3 | 33465 | 0 | 0 | 33465 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr7 | NT_029998 | AC097646 | 33144 | 3 | 23854 | 0 | 0 | 23854 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr7 | NT_029998 | AC097646 | 33144 | 3 | 23854 | 0 | 0 | 23854 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr7 | NT_029998 | AC097647 | 1 | 3 | 27352 | 0 | 0 | 27352 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr7 | NT_029998 | AC097647 | 1 | 3 | 27352 | 0 | 0 | 27352 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 14816 | 0 | 28040 | 42856 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AC115287 | 524206 | 1 | 14816 | 0 | 28040 | 42856 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr17 | NT_024972 | AC129894 | 1 | 1 | 30032 | 0 | 0 | 30032 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr17 | NT_024972 | AC129894 | 1 | 1 | 30032 | 0 | 0 | 30032 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL627309 | 366972 | 3 | 35345 | 0 | 0 | 35345 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL627309 | 366972 | 3 | 35345 | 0 | 0 | 35345 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL669831 | 187305 | 3 | 37864 | 0 | 0 | 37864 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL669831 | 187305 | 3 | 37864 | 0 | 0 | 37864 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 19039 | 0 | 0 | 19039 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 19039 | 0 | 0 | 19039 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 19039 | 0 | 0 | 19039 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 | chr1 | NT_034471 | AL732372 | 1 | 3 | 19039 | 0 | 0 | 19039 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC073135 | 50001 | | 39213 | 0 | 0 | 39213 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC073135 | 50001 | | 39213 | 0 | 0 | 39213 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC090118 | 50001 | | 39988 | 0 | 0 | 39988 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC090118 | 50001 | | 39988 | 0 | 0 | 39988 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC099546 | 167413 | | 18056 | 0 | 13318 | 31374 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC099546 | 167413 | | 18056 | 0 | 13318 | 31374 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC112517 | 240006283 | | 35844 | 0 | 0 | 35844 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AC112517 | 240006283 | | 35844 | 0 | 0 | 35844 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AF198096 | 91111170 | | 23195 | 0 | 0 | 23195 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AF198096 | 91111170 | | 23195 | 0 | 0 | 23195 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AL359496 | 45001 | | 37592 | 0 | 0 | 37592 |
S/G/Y/R/B/O |
NT_025920 | AC010507 | 146318 | 3 |   |   | AL359496 | 45001 | | 37592 | 0 | 0 | 37592 |
S/G/Y/R/B/O |
NT_025920 | AC098474 | 167413 | 3 | chr19 | NT_025920 | AC016588 | 173193 | 3 | 0 | 1122 | 0 | 1122 |
S/G/Y/R/B/O |
NT_025920 | AC016588 | 173193 | 3 | chr19 | NT_025920 | AC010641 | 316647 | 3 | 12499 | 0 | 0 | 12499 |
S/G/Y/R/B/O |
NT_025920 | AC016588 | 173193 | 3 | chr19 | NT_025920 | AC135053 | 364642 | 1 | 16207 | 0 | 0 | 16207 |
S/G/Y/R/B/O |
NT_025920 | AC010641 | 316647 | 3 | chr19 | NT_025920 | AC008988 | 338942 | 3 | 10021 | 0 | 0 | 10021 |
S/G/Y/R/B/O |
NT_025920 | AC010641 | 316647 | 3 | chr19 | NT_025920 | AC135053 | 364642 | 1 | 19655 | 0 | 2447 | 22102 |
S/G/Y/R/B/O |
NT_025920 | AC008988 | 338942 | 3 | chr19 | NT_025920 | AC135053 | 364642 | 1 | 5277 | 0 | 0 | 5277 |
S/G/Y/R/B/O |
NT_025920 | AC008988 | 338942 | 3 |   |   | AC125794 | 316647 | | 17118 | 1952 | 15160 | 34230 |
S/G/Y/R/B/O |
NT_025920 | AC008988 | 338942 | 3 |   |   | AC126753 | 316647 | | 28582 | 0 | 0 | 28582 |
S/G/Y/R/B/O |
NT_025920 | AC135053 | 364642 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_025920 | AC135053 | 364642 | 1 | chr19 | NT_025920 | AC010641 | 316647 | 3 | 19655 | 0 | 2447 | 22102 |
S/G/Y/R/B/O |
NT_025920 | AC135053 | 364642 | 1 | chr19 | NT_025920 | AC016588 | 173193 | 3 | 16207 | 0 | 0 | 16207 |
S/G/Y/R/B/O |
NT_025920 | AC135053 | 364642 | 1 |   |   | AC126753 | 173193 | | 15420 | 0 | 3501 | 18921 |
| |
|
|
|