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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_035325 | AC107975 | 92399329 | 3 | chr15 | NT_035325 | AC022523 | 92483563 | 3 | 0 | 0 | 41997 | 41997 |
S/G/Y/R/B/O |
NT_035325 | AC022523 | 92483563 | 3 | chr15 | NT_035325 | AC015722 | 92595883 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC015722 | 92595883 | 3 | chr15 | NT_035325 | AC103968 | 92748747 | 3 | 12423 | 0 | 0 | 12423 |
S/G/Y/R/B/O |
NT_035325 | AC015722 | 92595883 | 3 |   |   | AC024271 | 92399329 | | 118409 | 0 | 0 | 118409 |
S/G/Y/R/B/O |
NT_035325 | AC015722 | 92595883 | 3 |   |   | AC099688 | 92399329 | | 122604 | 0 | 0 | 122604 |
S/G/Y/R/B/O |
NT_035325 | AC103968 | 92748747 | 3 | chr15 | NT_035325 | AC118658 | 92880892 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC118658 | 92880892 | 3 | chr15 | NT_035325 | AC118660 | 92924316 | 3 | 125051 | 0 | 0 | 125051 |
S/G/Y/R/B/O |
NT_035325 | AC118658 | 92880892 | 3 |   |   | AC009561 | 92595883 | | 134218 | 2318 | 7261 | 143797 |
S/G/Y/R/B/O |
NT_035325 | AC118660 | 92924316 | 3 | chr15 | NT_035325 | AC055807 | 93070727 | 3 | 21440 | 0 | 0 | 21440 |
S/G/Y/R/B/O |
NT_035325 | AC118660 | 92924316 | 3 |   |   | AC009561 | 92924316 | | 125353 | 4369 | 3588 | 133310 |
S/G/Y/R/B/O |
NT_035325 | AC055807 | 93070727 | 3 | chr15 | NT_035325 | AC069029 | 93248928 | 3 | 70401 | 0 | 0 | 70401 |
S/G/Y/R/B/O |
NT_035325 | AC055807 | 93070727 | 3 |   |   | AC080108 | 93248928 | | 21399 | 13329 | 8466 | 43194 |
S/G/Y/R/B/O |
NT_035325 | AC069029 | 93248928 | 3 | chr15 | NT_035325 | AC036108 | 93369545 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC069029 | 93248928 | 3 |   |   | AC016810 | 92924316 | | 33852 | 0 | 0 | 33852 |
S/G/Y/R/B/O |
NT_035325 | AC069029 | 93248928 | 3 |   |   | AC027085 | 92924316 | | 28989 | 0 | 1265 | 30254 |
S/G/Y/R/B/O |
NT_035325 | AC069029 | 93248928 | 3 |   |   | AC080108 | 93070727 | | 83764 | 33410 | 23459 | 140633 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 | chr15 | NT_035325 | AC022819 | 93523603 | 3 | 11680 | 0 | 0 | 11680 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 |   |   | AC016810 | 93070727 | | 90451 | 0 | 0 | 90451 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 |   |   | AC016810 | 93070727 | | 90451 | 0 | 0 | 90451 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 |   |   | AC018999 | 93070727 | | 56722 | 6284 | 3698 | 66704 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 |   |   | AC018999 | 93070727 | | 56722 | 6284 | 3698 | 66704 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 |   |   | AC027085 | 93523603 | | 81154 | 2611 | 449 | 84214 |
S/G/Y/R/B/O |
NT_035325 | AC036108 | 93369545 | 1 |   |   | AC027085 | 93523603 | | 81154 | 2611 | 449 | 84214 |
S/G/Y/R/B/O |
NT_035325 | AC022819 | 93523603 | 3 | chr15 | NT_035325 | AC037479 | 93717406 | 3 | 120067 | 0 | 0 | 120067 |
S/G/Y/R/B/O |
NT_035325 | AC022819 | 93523603 | 3 |   |   | AC018999 | 93523603 | | 45226 | 8603 | 18204 | 72033 |
S/G/Y/R/B/O |
NT_035325 | AC037479 | 93717406 | 3 | chr15 | NT_035325 | AC015660 | 93775100 | 3 | 38213 | 0 | 0 | 38213 |
S/G/Y/R/B/O |
NT_035325 | AC015660 | 93775100 | 3 | chr15 | NT_035325 | AC103967 | 93904584 | 3 | 0 | 0 | 128919 | 128919 |
S/G/Y/R/B/O |
NT_035325 | AC103967 | 93904584 | 3 | chr15 | NT_035325 | AC013526 | 93976667 | 3 | 71881 | 0 | 0 | 71881 |
S/G/Y/R/B/O |
NT_035325 | AC103967 | 93904584 | 3 | chr15 | NT_035325 | AC022692 | 94061506 | 2 | 36713 | 0 | 0 | 36713 |
S/G/Y/R/B/O |
NT_035325 | AC103967 | 93904584 | 3 |   |   | AC011766 | 93904584 | | 36682 | 0 | 0 | 36682 |
S/G/Y/R/B/O |
NT_035325 | AC103967 | 93904584 | 3 |   |   | AC011769 | 93904584 | | 43518 | 3780 | 3868 | 51166 |
S/G/Y/R/B/O |
NT_035325 | AC013526 | 93976667 | 3 | chr15 | NT_035325 | AC022692 | 94061506 | 2 | 121406 | 0 | 0 | 121406 |
S/G/Y/R/B/O |
NT_035325 | AC013526 | 93976667 | 3 |   |   | AC011766 | 94061506 | | 121252 | 0 | 0 | 121252 |
S/G/Y/R/B/O |
NT_035325 | AC013526 | 93976667 | 3 |   |   | AC011769 | 94061506 | | 61206 | 25973 | 11100 | 98279 |
S/G/Y/R/B/O |
NT_035325 | AC022692 | 94061506 | 2 | chr15 | NT_035325 | AC090825 | 94105219 | 3 | 8987 | 0 | 0 | 8987 |
S/G/Y/R/B/O |
NT_035325 | AC022692 | 94061506 | 2 | chr15 | NT_035325 | AC103967 | 93904584 | 3 | 36713 | 0 | 0 | 36713 |
S/G/Y/R/B/O |
NT_035325 | AC022692 | 94061506 | 2 |   |   | AC011766 | 93904584 | | 115937 | 0 | 0 | 115937 |
S/G/Y/R/B/O |
NT_035325 | AC022692 | 94061506 | 2 |   |   | AC011769 | 93904584 | | 39531 | 24082 | 9011 | 72624 |
S/G/Y/R/B/O |
NT_035325 | AC022692 | 94061506 | 2 |   |   | AC019182 | 93976667 | | 11382 | 0 | 0 | 11382 |
S/G/Y/R/B/O |
NT_035325 | AC090825 | 94105219 | 3 | chr15 | NT_035325 | AC084855 | 94275726 | 3 | 33086 | 0 | 0 | 33086 |
S/G/Y/R/B/O |
NT_035325 | AC090825 | 94105219 | 3 |   |   | AC012053 | 93904584 | | 23123 | 0 | 4132 | 27255 |
S/G/Y/R/B/O |
NT_035325 | AC090825 | 94105219 | 3 |   |   | AC013519 | 93904584 | | 41905 | 1609 | 48275 | 91789 |
S/G/Y/R/B/O |
NT_035325 | AC090825 | 94105219 | 3 |   |   | AC019182 | 93904584 | | 60936 | 0 | 8067 | 69003 |
S/G/Y/R/B/O |
NT_035325 | AC084855 | 94275726 | 3 | chr15 | NT_035325 | AC022710 | 94410470 | 3 | 13018 | 0 | 0 | 13018 |
S/G/Y/R/B/O |
NT_035325 | AC084855 | 94275726 | 3 |   |   | AC012053 | 94275726 | | 99059 | 11567 | 29689 | 140315 |
S/G/Y/R/B/O |
NT_035325 | AC084855 | 94275726 | 3 |   |   | AC013519 | 94275726 | | 73963 | 1609 | 21886 | 97458 |
S/G/Y/R/B/O |
NT_035325 | AC022710 | 94410470 | 3 | chr15 | NT_035325 | AC113187 | 94596987 | 3 | 102387 | 0 | 0 | 102387 |
S/G/Y/R/B/O |
NT_035325 | AC113187 | 94596987 | 3 | chr15 | NT_035325 | AC015723 | 94700407 | 3 | 27117 | 0 | 0 | 27117 |
S/G/Y/R/B/O |
NT_035325 | AC015723 | 94700407 | 3 | chr15 | NT_035325 | AC027020 | 94836632 | 3 | 0 | 0 | 51074 | 51074 |
S/G/Y/R/B/O |
NT_035325 | AC015723 | 94700407 | 3 |   |   | AC016079 | 94410470 | | 16797 | 0 | 9418 | 26215 |
S/G/Y/R/B/O |
NT_035325 | AC027020 | 94836632 | 3 | chr15 | NT_035325 | AC090695 | 94939380 | 2 | 20009 | 0 | 873 | 20882 |
S/G/Y/R/B/O |
NT_035325 | AC027020 | 94836632 | 3 |   |   | AC016079 | 94700407 | | 62256 | 0 | 0 | 62256 |
S/G/Y/R/B/O |
NT_035325 | AC027020 | 94836632 | 3 |   |   | AC025229 | 94700407 | | 21913 | 0 | 473 | 22386 |
S/G/Y/R/B/O |
NT_035325 | AC090695 | 94939380 | 2 | chr15 | NT_035325 | AC087762 | 95039723 | 2 | 30078 | 0 | 36870 | 66948 |
S/G/Y/R/B/O |
NT_035325 | AC090695 | 94939380 | 2 |   |   | AC015560 | 94939380 | | 29738 | 0 | 22917 | 52655 |
S/G/Y/R/B/O |
NT_035325 | AC090695 | 94939380 | 2 |   |   | AC025229 | 94939380 | | 111951 | 8698 | 15862 | 136511 |
S/G/Y/R/B/O |
NT_035325 | AC087762 | 95039723 | 2 | chr15 | NT_035325 | AC015712 | 95171345 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC087762 | 95039723 | 2 |   |   | AC015560 | 95039723 | | 80338 | 0 | 0 | 80338 |
S/G/Y/R/B/O |
NT_035325 | AC087762 | 95039723 | 2 |   |   | AC015560 | 95039723 | | 80338 | 0 | 0 | 80338 |
S/G/Y/R/B/O |
NT_035325 | AC087762 | 95039723 | 2 |   |   | AC025229 | 95039723 | | 39958 | 2689 | 4397 | 47044 |
S/G/Y/R/B/O |
NT_035325 | AC087762 | 95039723 | 2 |   |   | AC025229 | 95039723 | | 39958 | 2689 | 4397 | 47044 |
S/G/Y/R/B/O |
NT_035325 | AC015712 | 95171345 | 3 | chr15 | NT_035325 | AC090907 | 95321001 | 1 | 23733 | 0 | 0 | 23733 |
S/G/Y/R/B/O |
NT_035325 | AC015712 | 95171345 | 3 |   |   | AC015560 | 94939380 | | 26225 | 0 | 0 | 26225 |
S/G/Y/R/B/O |
NT_035325 | AC015712 | 95171345 | 3 |   |   | AC020578 | 94939380 | | 24447 | 0 | 0 | 24447 |
S/G/Y/R/B/O |
NT_035325 | AC090907 | 95321001 | 1 | chr15 | NT_035325 | AC019254 | 95430206 | 2 | 11192 | 0 | 22680 | 33872 |
S/G/Y/R/B/O |
NT_035325 | AC019254 | 95430206 | 2 | chr15 | NT_035325 | AC023024 | 95574558 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC019254 | 95430206 | 2 |   |   | AC020578 | 95430206 | | 46292 | 0 | 11626 | 57918 |
S/G/Y/R/B/O |
NT_035325 | AC023024 | 95574558 | 3 | chr15 | NT_035325 | AC087528 | 95758229 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC087528 | 95758229 | 1 | chr15 | NT_035325 | AC090164 | 95874902 | 2 | 16388 | 0 | 0 | 16388 |
S/G/Y/R/B/O |
NT_035325 | AC087528 | 95758229 | 1 |   |   | AC016672 | 95321001 | | 15179 | 0 | 19262 | 34441 |
S/G/Y/R/B/O |
NT_035325 | AC087528 | 95758229 | 1 |   |   | AC016672 | 95321001 | | 15179 | 0 | 19262 | 34441 |
S/G/Y/R/B/O |
NT_035325 | AC090164 | 95874902 | 2 | chr15 | NT_035325 | AC027559 | 96007782 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC090164 | 95874902 | 2 |   |   | AC016672 | 8602527 | | 164411 | 0 | 19776 | 184187 |
S/G/Y/R/B/O |
NT_035325 | AC090164 | 95874902 | 2 |   |   | AC016672 | 8602527 | | 164411 | 0 | 19776 | 184187 |
S/G/Y/R/B/O |
NT_035325 | AC027559 | 96007782 | 2 | chr15 | NT_035325 | AC107977 | 96149263 | 2 | 0 | 0 | 117586 | 117586 |
S/G/Y/R/B/O |
NT_035325 | AC027559 | 96007782 | 2 |   |   | AC025234 | 95758229 | | 91755 | 105323 | 222942 | 420020 |
S/G/Y/R/B/O |
NT_035325 | AC027559 | 96007782 | 2 |   |   | AC055861 | 95758229 | | 15360 | 0 | 93565 | 108925 |
S/G/Y/R/B/O |
NT_035325 | AC027559 | 96007782 | 2 |   |   | AC087635 | 95758229 | | 97384 | 23706 | 176803 | 297893 |
S/G/Y/R/B/O |
NT_035325 | AC107977 | 96149263 | 2 | chr15 | NT_035325 | AC129907 | 96313085 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC107977 | 96149263 | 2 |   |   | AC025234 | 96149263 | | 40107 | 24681 | 99072 | 163860 |
S/G/Y/R/B/O |
NT_035325 | AC107977 | 96149263 | 2 |   |   | AC055861 | 96007782 | | 64379 | 6633 | 201425 | 272437 |
S/G/Y/R/B/O |
NT_035325 | AC107977 | 96149263 | 2 |   |   | AC087635 | 96007782 | | 38594 | 21747 | 137763 | 198104 |
S/G/Y/R/B/O |
NT_035325 | AC107977 | 96149263 | 2 |   |   | AC107941 | 96007782 | | 46878 | 1108 | 228433 | 276419 |
S/G/Y/R/B/O |
NT_035325 | AC129907 | 96313085 | 3 | chr15 | NT_035325 | AC126390 | 96409218 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035325 | AC129907 | 96313085 | 3 | chr19 | NT_025920 | AC008993 | 1 | 3 | 24675 | 0 | 0 | 24675 |
S/G/Y/R/B/O |
NT_035325 | AC129907 | 96313085 | 3 |   |   | AC005604 | 181483764 | | 41753 | 0 | 0 | 41753 |
S/G/Y/R/B/O |
NT_035325 | AC129907 | 96313085 | 3 |   |   | AC055861 | 1 | | 10758 | 0 | 30216 | 40974 |
S/G/Y/R/B/O |
NT_035325 | AC129907 | 96313085 | 3 |   |   | AC130701 | 1 | | 18831 | 0 | 0 | 18831 |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 | chr17 | NT_010799 | AC005412 | 29386969 | 3 | 38192 | 0 | 27084 | 65276 |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 | chr17 | NT_010799 | AC005412 | 29386969 | 3 | 38192 | 0 | 27084 | 65276 |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 | chr17 | NT_010799 | AC024619 | 29193216 | 2 | 108707 | 0 | 0 | 108707 |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 | chr17 | NT_010799 | AC024619 | 29193216 | 2 | 108707 | 0 | 0 | 108707 |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 |   |   | AC027810 | 29193216 | | 98565 | 5857 | 48929 | 153351 |
S/G/Y/R/B/O |
NT_035325 | AC126390 | 96409218 | 1 |   |   | AC027810 | 29193216 | | 98565 | 5857 | 48929 | 153351 |
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